Wall clock time and date at job start Tue Mar 31 2020 14:33:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35709 * 116.99491 * 2 1 4 4 C 1.38638 * 120.15192 * 0.03291 * 3 2 1 5 5 C 1.38107 * 120.09373 * 179.97438 * 4 3 2 6 6 C 1.38519 * 120.39103 * 359.97438 * 5 4 3 7 7 C 1.50700 * 119.85138 * 179.97438 * 6 5 4 8 8 N 1.46899 * 109.46517 * 84.39842 * 7 6 5 9 9 C 1.46904 * 111.00075 * 75.82866 * 8 7 6 10 10 C 1.50699 * 109.47215 * 189.99561 * 9 8 7 11 11 H 1.08009 * 119.99566 * 359.97438 * 10 9 8 12 12 C 1.37871 * 120.00334 * 179.97438 * 10 9 8 13 13 N 1.31517 * 119.99899 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 120.00375 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.46985 * 0.02562 * 14 12 10 16 16 H 1.48496 * 109.47276 * 119.99886 * 14 12 10 17 17 H 1.48500 * 109.47237 * 240.00262 * 14 12 10 18 18 C 1.46909 * 110.99618 * 199.77538 * 8 7 6 19 19 C 1.50701 * 109.46819 * 75.60478 * 18 8 7 20 20 C 1.34508 * 125.79194 * 84.71057 * 19 18 8 21 21 C 1.41386 * 106.84324 * 179.89107 * 20 19 18 22 22 C 1.34513 * 106.83734 * 0.37302 * 21 20 19 23 23 O 1.34305 * 125.78521 * 265.02374 * 19 18 8 24 24 C 1.37823 * 120.29165 * 0.02562 * 6 5 4 25 25 C 1.39705 * 119.90631 * 359.97438 * 24 6 5 26 26 C 1.43200 * 120.19626 * 180.27428 * 25 24 6 27 27 N 3.53311 * 165.92690 * 179.36884 * 2 1 3 28 28 H 1.09005 * 109.46964 * 299.99105 * 1 2 3 29 29 H 1.08991 * 109.47956 * 59.99214 * 1 2 3 30 30 H 1.09007 * 109.47008 * 179.97438 * 1 2 3 31 31 H 1.07999 * 119.95268 * 359.97438 * 4 3 2 32 32 H 1.07996 * 119.80587 * 179.97438 * 5 4 3 33 33 H 1.09003 * 109.47074 * 204.39829 * 7 6 5 34 34 H 1.08998 * 109.47195 * 324.40272 * 7 6 5 35 35 H 1.08997 * 109.46820 * 309.99716 * 9 8 7 36 36 H 1.08998 * 109.47218 * 69.99326 * 9 8 7 37 37 H 0.97000 * 120.00325 * 180.02562 * 13 12 10 38 38 H 1.09001 * 109.47226 * 195.59590 * 18 8 7 39 39 H 1.08994 * 109.47519 * 315.60591 * 18 8 7 40 40 H 1.07997 * 126.58273 * 0.02715 * 20 19 18 41 41 H 1.07996 * 126.58249 * 180.16708 * 21 20 19 42 42 H 1.08007 * 125.78870 * 179.75037 * 22 21 20 43 43 H 1.08001 * 120.04499 * 180.02562 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2092 0.0000 4 6 1.2929 2.3739 0.0007 5 6 1.9210 3.6038 0.0012 6 6 3.3039 3.6845 0.0016 7 6 3.9766 5.0330 0.0016 8 7 4.0738 5.5316 1.3800 9 6 5.1416 4.8411 2.1155 10 6 5.0541 5.1948 3.5778 11 1 4.2825 5.8657 3.9259 12 6 5.9587 4.6619 4.4714 13 7 6.8985 3.8453 4.0475 14 14 5.8507 5.1008 6.2838 15 1 4.7140 6.0314 6.5008 16 1 5.6376 3.8658 7.0804 17 1 7.1141 5.7536 6.7113 18 6 4.2763 6.9865 1.4004 19 6 2.9763 7.6791 1.0819 20 6 2.0037 7.9710 1.9640 21 6 0.9750 8.6171 1.2406 22 6 1.3769 8.6739 -0.0418 23 8 2.5898 8.1042 -0.1321 24 6 4.0672 2.5369 0.0009 25 6 3.4446 1.2863 0.0004 26 6 4.2316 0.0899 0.0056 27 7 4.8561 -0.8591 0.0095 28 1 -0.3633 0.5137 0.8901 29 1 -0.3635 0.5139 -0.8898 30 1 -0.3633 -1.0277 -0.0005 31 1 0.2143 2.3192 0.0008 32 1 1.3306 4.5081 0.0013 33 1 4.9764 4.9403 -0.4226 34 1 3.3913 5.7311 -0.5968 35 1 5.0280 3.7639 1.9948 36 1 6.1108 5.1503 1.7244 37 1 7.5348 3.4700 4.6761 38 1 4.6177 7.2920 2.3895 39 1 5.0251 7.2597 0.6570 40 1 2.0086 7.7555 3.0222 41 1 0.0436 8.9902 1.6403 42 1 0.8187 9.1043 -0.8602 43 1 5.1451 2.6045 0.0017 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000135119068.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:08 Heat of formation + Delta-G solvation = 24.827912 kcal Electronic energy + Delta-G solvation = -26987.009755 eV Core-core repulsion = 23192.137560 eV Total energy + Delta-G solvation = -3794.872195 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.28193 -41.36567 -39.28373 -37.99983 -37.27170 -34.68989 -33.75312 -32.68040 -32.25730 -31.05364 -29.17135 -28.22633 -26.74558 -25.49015 -24.95712 -22.93312 -22.50791 -22.10447 -21.05750 -19.72462 -18.58047 -18.42651 -18.08673 -17.46680 -16.98434 -16.77778 -16.55096 -16.05638 -15.87870 -15.44759 -15.36522 -15.02998 -14.91365 -14.84060 -14.28027 -14.18628 -13.85711 -13.71969 -13.56499 -13.46355 -13.24579 -13.13396 -12.97579 -12.81112 -12.72568 -12.56815 -12.37973 -12.28160 -11.99421 -11.95267 -11.73723 -11.21099 -10.65145 -10.57739 -9.99461 -9.30475 -9.12358 -8.99503 -8.15868 -6.23597 -0.17792 0.35102 0.99050 1.41776 1.44169 1.55503 1.60099 1.87897 1.93938 2.22393 2.25873 2.43311 2.75985 2.91785 3.19056 3.56359 3.82763 3.88574 3.99192 4.06220 4.25003 4.32968 4.34826 4.36423 4.44521 4.47557 4.57958 4.59664 4.76526 4.79426 4.80580 4.89463 5.09591 5.10793 5.20303 5.23954 5.26898 5.33379 5.41543 5.59852 5.67193 5.70999 5.80560 6.09670 6.25814 6.31151 6.41913 6.47114 6.62273 6.92587 7.45675 8.94720 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.007345 B = 0.005073 C = 0.003444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3811.069000 B = 5517.923113 C = 8127.624987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.335 6.335 3 C 0.174 3.826 4 C -0.198 4.198 5 C -0.015 4.015 6 C -0.110 4.110 7 C 0.095 3.905 8 N -0.526 5.526 9 C 0.206 3.794 10 C -0.514 4.514 11 H 0.066 0.934 12 C 0.006 3.994 13 N -0.933 5.933 14 Si 0.957 3.043 15 H -0.259 1.259 16 H -0.286 1.286 17 H -0.282 1.282 18 C 0.140 3.860 19 C -0.009 4.009 20 C -0.207 4.207 21 C -0.223 4.223 22 C -0.041 4.041 23 O -0.191 6.191 24 C -0.026 4.026 25 C -0.090 4.090 26 C 0.284 3.716 27 N -0.470 5.470 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.116 0.884 31 H 0.174 0.826 32 H 0.150 0.850 33 H 0.035 0.965 34 H 0.094 0.906 35 H 0.021 0.979 36 H -0.033 1.033 37 H 0.261 0.739 38 H 0.097 0.903 39 H 0.043 0.957 40 H 0.136 0.864 41 H 0.166 0.834 42 H 0.240 0.760 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.133 5.501 -11.296 22.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.248 6.248 3 C 0.125 3.875 4 C -0.217 4.217 5 C -0.034 4.034 6 C -0.111 4.111 7 C -0.032 4.032 8 N -0.250 5.250 9 C 0.081 3.919 10 C -0.552 4.552 11 H 0.084 0.916 12 C -0.192 4.192 13 N -0.574 5.574 14 Si 0.783 3.217 15 H -0.183 1.183 16 H -0.213 1.213 17 H -0.208 1.208 18 C 0.013 3.987 19 C -0.059 4.059 20 C -0.227 4.227 21 C -0.242 4.242 22 C -0.108 4.108 23 O -0.088 6.088 24 C -0.048 4.048 25 C -0.094 4.094 26 C -0.029 4.029 27 N -0.147 5.147 28 H 0.090 0.910 29 H 0.099 0.901 30 H 0.134 0.866 31 H 0.192 0.808 32 H 0.168 0.832 33 H 0.053 0.947 34 H 0.112 0.888 35 H 0.039 0.961 36 H -0.016 1.016 37 H 0.069 0.931 38 H 0.115 0.885 39 H 0.061 0.939 40 H 0.154 0.846 41 H 0.184 0.816 42 H 0.256 0.744 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -17.212 3.598 -11.253 20.876 hybrid contribution 0.996 0.397 1.053 1.503 sum -16.216 3.995 -10.200 19.569 Atomic orbital electron populations 1.23508 0.75213 1.05910 1.03366 1.86055 1.24633 1.26500 1.87641 1.18934 0.89602 0.85838 0.93152 1.21415 1.01736 0.90131 1.08386 1.21213 0.93062 0.98270 0.90885 1.19580 0.94454 0.93815 1.03220 1.21031 0.98704 0.93242 0.90252 1.61999 1.47805 1.02548 1.12655 1.19460 0.86051 0.93856 0.92559 1.21485 1.13207 1.27524 0.93009 0.91561 1.25771 0.95096 0.95141 1.03243 1.70080 1.18181 1.32942 1.36186 0.85510 0.78215 0.77982 0.80016 1.18301 1.21265 1.20767 1.20337 0.89081 0.87374 1.01913 1.22283 0.98661 1.02380 0.82553 1.21701 0.95071 1.05002 1.00946 1.22071 1.01913 1.06137 0.94044 1.24737 0.84588 1.01402 1.00072 1.84002 1.32742 1.59845 1.32211 1.20914 0.99992 0.89867 0.93979 1.15341 0.89235 0.87451 1.17417 1.25750 0.92445 0.92648 0.92105 1.81133 1.10081 1.11864 1.11671 0.90957 0.90067 0.86578 0.80834 0.83235 0.94662 0.88804 0.96137 1.01559 0.93054 0.88502 0.93881 0.84596 0.81627 0.74414 0.85977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.18 9.81 113.37 1.11 1.29 16 2 O -0.34 -8.26 9.93 -90.30 -0.90 -9.16 16 3 C 0.17 4.62 6.69 22.84 0.15 4.77 16 4 C -0.20 -4.17 9.03 22.33 0.20 -3.96 16 5 C -0.02 -0.37 9.70 22.31 0.22 -0.15 16 6 C -0.11 -3.31 5.03 -19.90 -0.10 -3.41 16 7 C 0.10 3.03 4.94 85.56 0.42 3.46 16 8 N -0.53 -20.28 4.34 -909.93 -3.94 -24.22 16 9 C 0.21 10.12 4.54 85.56 0.39 10.51 16 10 C -0.51 -27.38 8.23 25.60 0.21 -27.17 16 11 H 0.07 3.44 7.31 -2.91 -0.02 3.42 16 12 C 0.01 0.31 5.46 84.65 0.46 0.77 16 13 N -0.93 -55.34 13.29 21.45 0.28 -55.06 16 14 Si 0.96 43.56 29.54 68.60 2.03 45.59 16 15 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 16 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 17 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 18 C 0.14 4.99 5.33 85.56 0.46 5.44 16 19 C -0.01 -0.26 6.16 24.83 0.15 -0.11 16 20 C -0.21 -6.00 10.81 22.19 0.24 -5.76 16 21 C -0.22 -4.85 10.91 22.19 0.24 -4.60 16 22 C -0.04 -0.79 12.09 66.97 0.81 0.02 16 23 O -0.19 -5.04 10.17 -2.56 -0.03 -5.06 16 24 C -0.03 -0.87 8.10 22.53 0.18 -0.69 16 25 C -0.09 -2.91 5.75 -21.21 -0.12 -3.03 16 26 C 0.28 10.47 14.87 88.33 1.31 11.78 16 27 N -0.47 -18.93 18.54 19.00 0.35 -18.57 16 28 H 0.07 0.80 7.66 -2.38 -0.02 0.78 16 29 H 0.08 0.71 7.66 -2.39 -0.02 0.69 16 30 H 0.12 1.13 8.14 -2.38 -0.02 1.11 16 31 H 0.17 2.24 6.30 -2.91 -0.02 2.22 16 32 H 0.15 3.04 8.06 -2.91 -0.02 3.01 16 33 H 0.04 1.16 7.90 -2.39 -0.02 1.14 16 34 H 0.09 2.61 6.87 -2.39 -0.02 2.60 16 35 H 0.02 1.09 6.33 -2.39 -0.02 1.08 16 36 H -0.03 -1.78 8.12 -2.39 -0.02 -1.80 16 37 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 38 H 0.10 3.81 6.58 -2.39 -0.02 3.80 16 39 H 0.04 1.46 8.00 -2.39 -0.02 1.44 16 40 H 0.14 4.14 8.06 -2.91 -0.02 4.12 16 41 H 0.17 2.68 8.06 -2.91 -0.02 2.66 16 42 H 0.24 2.19 8.06 -2.91 -0.02 2.17 16 43 H 0.12 4.31 7.98 -2.91 -0.02 4.28 16 Total: -1.00 -70.50 373.96 5.17 -65.32 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: 1.03 Total: 12.01 kcal Atomic # 6 Polarization: -17.18 SS G_CDS: 6.34 Total: -10.84 kcal Atomic # 7 Polarization: -94.55 SS G_CDS: -3.31 Total: -97.85 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: -0.92 Total: -14.22 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Total: -70.50 5.17 -65.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135119068.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.152 kcal (2) G-P(sol) polarization free energy of solvation -70.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds