Wall clock time and date at job start Tue Mar 31 2020 14:35:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35973 * 117.00008 * 2 1 4 4 C 1.38722 * 119.98430 * 179.97438 * 3 2 1 5 5 C 1.38088 * 120.01722 * 180.25621 * 4 3 2 6 6 C 1.38858 * 119.97947 * 359.49719 * 5 4 3 7 7 N 1.40112 * 120.01229 * 180.25322 * 6 5 4 8 8 C 1.34780 * 119.99769 * 212.06152 * 7 6 5 9 9 O 1.21598 * 119.99793 * 4.52110 * 8 7 6 10 10 N 1.34768 * 119.99806 * 184.51970 * 8 7 6 11 11 C 1.37164 * 120.00261 * 359.97438 * 10 8 7 12 12 H 1.08003 * 120.00039 * 319.94974 * 11 10 8 13 13 C 1.38884 * 120.00102 * 139.94982 * 11 10 8 14 14 N 1.31472 * 119.99875 * 161.06893 * 13 11 10 15 15 Si 1.86797 * 119.99847 * 341.07300 * 13 11 10 16 16 H 1.48501 * 109.47275 * 95.29262 * 15 13 11 17 17 H 1.48500 * 109.46917 * 215.29240 * 15 13 11 18 18 H 1.48503 * 109.47141 * 335.28884 * 15 13 11 19 19 C 1.46501 * 119.99903 * 180.02562 * 10 8 7 20 20 C 1.50698 * 109.47275 * 87.44957 * 19 10 8 21 21 C 1.38235 * 119.99675 * 272.56675 * 20 19 10 22 22 C 1.38244 * 119.99815 * 179.76554 * 21 20 19 23 23 C 1.38234 * 119.99615 * 0.50970 * 22 21 20 24 24 C 1.38232 * 120.00193 * 359.74684 * 23 22 21 25 25 C 1.38232 * 120.00159 * 359.97438 * 24 23 22 26 26 C 1.38846 * 119.97270 * 0.52821 * 6 5 4 27 27 C 1.38091 * 119.98313 * 359.72342 * 26 6 5 28 28 H 1.08998 * 109.47109 * 299.99527 * 1 2 3 29 29 H 1.09000 * 109.47439 * 59.99597 * 1 2 3 30 30 H 1.08996 * 109.47062 * 179.97438 * 1 2 3 31 31 H 1.08002 * 119.99055 * 359.97438 * 4 3 2 32 32 H 1.07996 * 120.01172 * 179.75057 * 5 4 3 33 33 H 0.96994 * 120.00136 * 32.05740 * 7 6 5 34 34 H 0.97001 * 119.99861 * 179.97438 * 14 13 11 35 35 H 1.09003 * 109.47488 * 207.45238 * 19 10 8 36 36 H 1.09006 * 109.46907 * 327.44431 * 19 10 8 37 37 H 1.08000 * 120.00341 * 359.97438 * 21 20 19 38 38 H 1.07998 * 120.00139 * 180.22672 * 22 21 20 39 39 H 1.08001 * 119.99391 * 179.72498 * 23 22 21 40 40 H 1.08000 * 119.99599 * 179.97438 * 24 23 22 41 41 H 1.07999 * 120.00099 * 179.97438 * 25 24 23 42 42 H 1.07995 * 120.00977 * 179.70230 * 26 6 5 43 43 H 1.08000 * 119.99459 * 179.97438 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 3.4316 1.2837 0.0005 5 6 4.0593 2.5137 0.0059 6 6 3.3033 3.6785 0.0002 7 7 3.9394 4.9269 0.0002 8 6 3.3613 5.9777 0.6151 9 8 2.3292 5.8243 1.2395 10 7 3.9272 7.1984 0.5380 11 6 5.0917 7.3713 -0.1659 12 1 5.8720 6.6266 -0.1101 13 6 5.2675 8.5039 -0.9502 14 7 6.4759 8.8664 -1.3199 15 14 3.7868 9.5121 -1.4798 16 1 3.5909 10.6391 -0.5327 17 1 4.0156 10.0477 -2.8458 18 1 2.5768 8.6512 -1.4819 19 6 3.2992 8.3405 1.2068 20 6 3.7884 8.4205 2.6299 21 6 3.1401 7.7123 3.6244 22 6 3.5918 7.7819 4.9291 23 6 4.6853 8.5679 5.2409 24 6 5.3303 9.2803 4.2473 25 6 4.8822 9.2062 2.9417 26 6 1.9167 3.6055 0.0002 27 6 1.2905 2.3748 0.0001 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 4.0195 0.3777 0.0014 32 1 5.1377 2.5699 0.0104 33 1 4.7958 5.0348 -0.4422 34 1 6.5986 9.6572 -1.8680 35 1 3.5606 9.2586 0.6806 36 1 2.2164 8.2144 1.2013 37 1 2.2828 7.1020 3.3817 38 1 3.0876 7.2257 5.7056 39 1 5.0355 8.6257 6.2609 40 1 6.1844 9.8947 4.4910 41 1 5.3859 9.7631 2.1654 42 1 1.3282 4.5110 0.0006 43 1 0.2120 2.3178 0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000139577804.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:23 Heat of formation + Delta-G solvation = 8.374826 kcal Electronic energy + Delta-G solvation = -27228.970639 eV Core-core repulsion = 23433.384984 eV Total energy + Delta-G solvation = -3795.585655 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.22330 -39.44484 -38.51775 -37.13454 -35.11944 -33.67953 -32.23766 -30.97773 -30.75289 -30.36149 -28.69859 -26.98348 -25.80926 -24.77178 -22.67401 -21.99813 -21.73534 -20.88555 -19.61304 -17.98057 -17.87456 -17.46428 -16.48457 -15.89974 -15.78419 -15.60765 -15.23421 -14.71442 -14.48483 -14.39532 -14.15847 -14.00291 -13.51847 -13.16316 -12.95453 -12.80565 -12.70731 -12.59824 -12.38824 -12.29680 -12.05548 -11.80091 -11.63399 -11.21256 -11.08883 -10.81946 -10.66801 -10.51288 -10.27501 -10.03127 -9.52487 -9.33392 -8.97170 -8.67963 -8.39835 -8.25078 -7.95843 -7.16943 -6.57347 -4.23211 1.61911 1.76078 1.81703 1.92870 2.98096 3.15769 3.22306 3.40164 3.61686 3.85634 4.04587 4.27522 4.33010 4.84407 4.98473 5.07982 5.13896 5.18136 5.25485 5.35516 5.35898 5.41592 5.47506 5.60736 5.67701 5.70243 5.82999 5.90446 6.03665 6.14771 6.26036 6.28351 6.31405 6.50307 6.59289 6.68347 6.77293 6.85436 6.96647 6.97143 7.22457 7.25421 7.39142 7.52536 7.66785 7.78124 8.07271 8.18575 8.90986 9.37191 9.66704 10.52942 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.011980 B = 0.003964 C = 0.003326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2336.637354 B = 7062.120585 C = 8415.841969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.324 6.324 3 C 0.087 3.913 4 C -0.129 4.129 5 C -0.123 4.123 6 C 0.159 3.841 7 N -0.677 5.677 8 C 0.686 3.314 9 O -0.619 6.619 10 N -0.477 5.477 11 C -0.349 4.349 12 H 0.098 0.902 13 C 0.072 3.928 14 N -0.859 5.859 15 Si 0.874 3.126 16 H -0.272 1.272 17 H -0.287 1.287 18 H -0.260 1.260 19 C 0.156 3.844 20 C -0.086 4.086 21 C -0.098 4.098 22 C -0.133 4.133 23 C -0.129 4.129 24 C -0.130 4.130 25 C -0.092 4.092 26 C -0.089 4.089 27 C -0.185 4.185 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.094 0.906 31 H 0.128 0.872 32 H 0.130 0.870 33 H 0.415 0.585 34 H 0.276 0.724 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.128 0.872 38 H 0.114 0.886 39 H 0.113 0.887 40 H 0.115 0.885 41 H 0.123 0.877 42 H 0.142 0.858 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.606 -7.439 4.222 10.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.238 6.238 3 C 0.042 3.958 4 C -0.148 4.148 5 C -0.144 4.144 6 C 0.062 3.938 7 N -0.325 5.325 8 C 0.390 3.610 9 O -0.502 6.502 10 N -0.201 5.201 11 C -0.476 4.476 12 H 0.116 0.884 13 C -0.136 4.136 14 N -0.493 5.493 15 Si 0.702 3.298 16 H -0.199 1.199 17 H -0.214 1.214 18 H -0.184 1.184 19 C 0.032 3.968 20 C -0.088 4.088 21 C -0.116 4.116 22 C -0.151 4.151 23 C -0.147 4.147 24 C -0.148 4.148 25 C -0.111 4.111 26 C -0.110 4.110 27 C -0.204 4.204 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.112 0.888 31 H 0.146 0.854 32 H 0.148 0.852 33 H 0.253 0.747 34 H 0.086 0.914 35 H 0.093 0.907 36 H 0.096 0.904 37 H 0.146 0.854 38 H 0.132 0.868 39 H 0.131 0.869 40 H 0.133 0.867 41 H 0.141 0.859 42 H 0.160 0.840 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -7.065 -7.463 4.513 11.224 hybrid contribution -0.182 0.902 -0.530 1.062 sum -7.248 -6.561 3.983 10.557 Atomic orbital electron populations 1.22958 0.79093 1.03251 1.01254 1.86019 1.20801 1.27303 1.89657 1.18892 0.92275 0.83867 1.00810 1.20057 0.91146 0.97693 1.05947 1.20675 0.99729 0.90405 1.03606 1.17574 0.91713 0.84666 0.99878 1.42690 1.25418 1.06575 1.57785 1.15857 0.82911 0.81408 0.80838 1.90741 1.25400 1.84510 1.49569 1.42820 1.24691 1.04532 1.48026 1.18891 0.93071 1.10351 1.25311 0.88419 1.25311 0.96266 0.96932 0.95084 1.69764 1.20677 1.24614 1.34292 0.86964 0.84222 0.80522 0.78136 1.19919 1.21376 1.18425 1.20504 0.97514 0.90086 0.88666 1.20330 0.96034 0.96622 0.95795 1.21251 1.00154 0.97952 0.92271 1.21054 0.97598 0.99944 0.96509 1.21021 0.96744 0.98222 0.98730 1.21055 1.00037 1.00483 0.93261 1.21146 0.95489 0.98301 0.96170 1.21112 0.93488 0.97971 0.98401 1.21073 0.99602 0.91899 1.07868 0.92885 0.92931 0.88785 0.85431 0.85237 0.74652 0.91390 0.90747 0.90445 0.85409 0.86834 0.86938 0.86651 0.85887 0.84003 0.85835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.81 101.05 0.99 1.27 16 2 O -0.32 -4.33 10.50 -19.65 -0.21 -4.53 16 3 C 0.09 1.29 6.69 -39.22 -0.26 1.03 16 4 C -0.13 -1.87 9.98 -39.46 -0.39 -2.27 16 5 C -0.12 -1.90 9.96 -39.41 -0.39 -2.29 16 6 C 0.16 2.88 6.32 -83.62 -0.53 2.36 16 7 N -0.68 -13.53 5.24 -14.19 -0.07 -13.60 16 8 C 0.69 15.46 7.98 -86.92 -0.69 14.76 16 9 O -0.62 -14.44 12.42 5.28 0.07 -14.38 16 10 N -0.48 -10.97 2.13 -121.47 -0.26 -11.23 16 11 C -0.35 -8.56 8.97 -14.93 -0.13 -8.69 16 12 H 0.10 2.50 7.14 -52.48 -0.37 2.13 16 13 C 0.07 1.80 5.33 -17.47 -0.09 1.70 16 14 N -0.86 -22.48 13.96 55.49 0.77 -21.70 16 15 Si 0.87 19.58 24.93 -169.99 -4.24 15.34 16 16 H -0.27 -5.85 6.72 56.52 0.38 -5.47 16 17 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 18 H -0.26 -5.94 7.11 56.52 0.40 -5.54 16 19 C 0.16 3.36 4.19 -5.19 -0.02 3.34 16 20 C -0.09 -1.74 5.45 -104.63 -0.57 -2.31 16 21 C -0.10 -1.84 9.53 -39.58 -0.38 -2.22 16 22 C -0.13 -2.18 10.05 -39.58 -0.40 -2.58 16 23 C -0.13 -1.99 10.05 -39.59 -0.40 -2.39 16 24 C -0.13 -2.16 10.05 -39.59 -0.40 -2.55 16 25 C -0.09 -1.77 9.69 -39.59 -0.38 -2.15 16 26 C -0.09 -1.59 8.66 -39.41 -0.34 -1.93 16 27 C -0.19 -2.82 9.03 -39.46 -0.36 -3.18 16 28 H 0.05 0.47 7.66 -51.93 -0.40 0.07 16 29 H 0.05 0.45 7.66 -51.93 -0.40 0.06 16 30 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.13 1.57 8.06 -52.49 -0.42 1.14 16 32 H 0.13 1.75 8.06 -52.49 -0.42 1.33 16 33 H 0.41 7.98 6.92 -40.82 -0.28 7.70 16 34 H 0.28 6.79 8.31 -40.82 -0.34 6.46 16 35 H 0.07 1.63 3.40 -51.93 -0.18 1.45 16 36 H 0.08 1.63 7.46 -51.93 -0.39 1.24 16 37 H 0.13 2.49 7.15 -52.49 -0.38 2.11 16 38 H 0.11 1.58 8.06 -52.49 -0.42 1.15 16 39 H 0.11 1.41 8.06 -52.49 -0.42 0.98 16 40 H 0.12 1.62 8.06 -52.49 -0.42 1.20 16 41 H 0.12 2.43 8.06 -52.49 -0.42 2.00 16 42 H 0.14 2.77 6.27 -52.49 -0.33 2.44 16 43 H 0.12 1.58 6.29 -52.49 -0.33 1.25 16 LS Contribution 356.57 15.07 5.37 5.37 Total: -1.00 -28.49 356.57 -8.48 -36.97 By element: Atomic # 1 Polarization: 21.05 SS G_CDS: -5.17 Total: 15.88 kcal Atomic # 6 Polarization: -3.36 SS G_CDS: -4.75 Total: -8.11 kcal Atomic # 7 Polarization: -46.98 SS G_CDS: 0.44 Total: -46.54 kcal Atomic # 8 Polarization: -18.77 SS G_CDS: -0.14 Total: -18.91 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -4.24 Total: 15.34 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -28.49 -8.48 -36.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000139577804.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.341 kcal (2) G-P(sol) polarization free energy of solvation -28.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.966 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds