Wall clock time and date at job start Tue Mar 31 2020 14:35:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35973 * 117.00008 * 2 1 4 4 C 1.38722 * 119.98430 * 179.97438 * 3 2 1 5 5 C 1.38088 * 120.01722 * 180.25621 * 4 3 2 6 6 C 1.38858 * 119.97947 * 359.49719 * 5 4 3 7 7 N 1.40112 * 120.01229 * 180.25322 * 6 5 4 8 8 C 1.34780 * 119.99769 * 212.06152 * 7 6 5 9 9 O 1.21598 * 119.99793 * 4.52110 * 8 7 6 10 10 N 1.34768 * 119.99806 * 184.51970 * 8 7 6 11 11 C 1.37164 * 120.00261 * 359.97438 * 10 8 7 12 12 H 1.08003 * 120.00039 * 319.94974 * 11 10 8 13 13 C 1.38884 * 120.00102 * 139.94982 * 11 10 8 14 14 N 1.31472 * 119.99875 * 161.06893 * 13 11 10 15 15 Si 1.86797 * 119.99847 * 341.07300 * 13 11 10 16 16 H 1.48501 * 109.47275 * 95.29262 * 15 13 11 17 17 H 1.48500 * 109.46917 * 215.29240 * 15 13 11 18 18 H 1.48503 * 109.47141 * 335.28884 * 15 13 11 19 19 C 1.46501 * 119.99903 * 180.02562 * 10 8 7 20 20 C 1.50698 * 109.47275 * 87.44957 * 19 10 8 21 21 C 1.38235 * 119.99675 * 272.56675 * 20 19 10 22 22 C 1.38244 * 119.99815 * 179.76554 * 21 20 19 23 23 C 1.38234 * 119.99615 * 0.50970 * 22 21 20 24 24 C 1.38232 * 120.00193 * 359.74684 * 23 22 21 25 25 C 1.38232 * 120.00159 * 359.97438 * 24 23 22 26 26 C 1.38846 * 119.97270 * 0.52821 * 6 5 4 27 27 C 1.38091 * 119.98313 * 359.72342 * 26 6 5 28 28 H 1.08998 * 109.47109 * 299.99527 * 1 2 3 29 29 H 1.09000 * 109.47439 * 59.99597 * 1 2 3 30 30 H 1.08996 * 109.47062 * 179.97438 * 1 2 3 31 31 H 1.08002 * 119.99055 * 359.97438 * 4 3 2 32 32 H 1.07996 * 120.01172 * 179.75057 * 5 4 3 33 33 H 0.96994 * 120.00136 * 32.05740 * 7 6 5 34 34 H 0.97001 * 119.99861 * 179.97438 * 14 13 11 35 35 H 1.09003 * 109.47488 * 207.45238 * 19 10 8 36 36 H 1.09006 * 109.46907 * 327.44431 * 19 10 8 37 37 H 1.08000 * 120.00341 * 359.97438 * 21 20 19 38 38 H 1.07998 * 120.00139 * 180.22672 * 22 21 20 39 39 H 1.08001 * 119.99391 * 179.72498 * 23 22 21 40 40 H 1.08000 * 119.99599 * 179.97438 * 24 23 22 41 41 H 1.07999 * 120.00099 * 179.97438 * 25 24 23 42 42 H 1.07995 * 120.00977 * 179.70230 * 26 6 5 43 43 H 1.08000 * 119.99459 * 179.97438 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 3.4316 1.2837 0.0005 5 6 4.0593 2.5137 0.0059 6 6 3.3033 3.6785 0.0002 7 7 3.9394 4.9269 0.0002 8 6 3.3613 5.9777 0.6151 9 8 2.3292 5.8243 1.2395 10 7 3.9272 7.1984 0.5380 11 6 5.0917 7.3713 -0.1659 12 1 5.8720 6.6266 -0.1101 13 6 5.2675 8.5039 -0.9502 14 7 6.4759 8.8664 -1.3199 15 14 3.7868 9.5121 -1.4798 16 1 3.5909 10.6391 -0.5327 17 1 4.0156 10.0477 -2.8458 18 1 2.5768 8.6512 -1.4819 19 6 3.2992 8.3405 1.2068 20 6 3.7884 8.4205 2.6299 21 6 3.1401 7.7123 3.6244 22 6 3.5918 7.7819 4.9291 23 6 4.6853 8.5679 5.2409 24 6 5.3303 9.2803 4.2473 25 6 4.8822 9.2062 2.9417 26 6 1.9167 3.6055 0.0002 27 6 1.2905 2.3748 0.0001 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 4.0195 0.3777 0.0014 32 1 5.1377 2.5699 0.0104 33 1 4.7958 5.0348 -0.4422 34 1 6.5986 9.6572 -1.8680 35 1 3.5606 9.2586 0.6806 36 1 2.2164 8.2144 1.2013 37 1 2.2828 7.1020 3.3817 38 1 3.0876 7.2257 5.7056 39 1 5.0355 8.6257 6.2609 40 1 6.1844 9.8947 4.4910 41 1 5.3859 9.7631 2.1654 42 1 1.3282 4.5110 0.0006 43 1 0.2120 2.3178 0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000139577804.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:22 Heat of formation + Delta-G solvation = -6.428880 kcal Electronic energy + Delta-G solvation = -27229.612576 eV Core-core repulsion = 23433.384984 eV Total energy + Delta-G solvation = -3796.227592 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.70831 -40.76677 -39.88862 -38.43140 -36.83243 -35.19478 -34.10205 -32.45751 -32.00278 -31.72769 -29.91118 -28.01573 -27.44331 -26.50571 -23.96783 -23.37603 -23.01837 -22.27600 -21.31333 -19.60576 -19.22520 -18.87681 -18.01541 -17.45283 -17.03313 -16.88428 -16.55339 -16.21554 -15.96200 -15.82889 -15.78229 -15.33867 -14.75515 -14.63344 -14.46990 -14.31153 -14.17265 -14.06609 -13.66721 -13.59723 -13.50050 -13.28609 -12.91452 -12.74654 -12.40071 -12.26673 -12.03593 -11.98560 -11.81967 -11.71245 -11.27123 -10.85782 -10.65145 -9.94093 -9.79160 -9.76160 -9.65082 -8.53693 -8.50941 -6.18130 0.38686 0.42999 0.47186 0.54941 1.17357 1.30637 1.39740 2.01323 2.15888 2.24411 2.46142 2.80604 2.91839 3.05783 3.48340 3.88779 3.93758 3.96682 3.98083 4.19223 4.29153 4.30718 4.33312 4.42985 4.43721 4.48871 4.55179 4.64004 4.73397 4.76081 4.78698 5.00789 5.10664 5.13029 5.20834 5.35756 5.43040 5.46003 5.59499 5.61534 5.62877 5.79549 5.93172 6.01606 6.16685 6.21084 6.46930 6.51298 6.99661 7.57632 7.89276 8.61607 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.011980 B = 0.003964 C = 0.003326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2336.637354 B = 7062.120585 C = 8415.841969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.330 6.330 3 C 0.093 3.907 4 C -0.128 4.128 5 C -0.116 4.116 6 C 0.125 3.875 7 N -0.675 5.675 8 C 0.681 3.319 9 O -0.632 6.632 10 N -0.486 5.486 11 C -0.341 4.341 12 H 0.080 0.920 13 C 0.042 3.958 14 N -0.893 5.893 15 Si 0.919 3.081 16 H -0.259 1.259 17 H -0.284 1.284 18 H -0.271 1.271 19 C 0.155 3.845 20 C -0.108 4.108 21 C -0.113 4.113 22 C -0.130 4.130 23 C -0.118 4.118 24 C -0.128 4.128 25 C -0.113 4.113 26 C -0.106 4.106 27 C -0.184 4.184 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.123 0.877 31 H 0.155 0.845 32 H 0.148 0.852 33 H 0.415 0.585 34 H 0.279 0.721 35 H 0.068 0.932 36 H 0.073 0.927 37 H 0.113 0.887 38 H 0.143 0.857 39 H 0.154 0.846 40 H 0.143 0.857 41 H 0.107 0.893 42 H 0.117 0.883 43 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.005 -8.861 5.871 12.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.244 6.244 3 C 0.047 3.953 4 C -0.147 4.147 5 C -0.136 4.136 6 C 0.029 3.971 7 N -0.323 5.323 8 C 0.384 3.616 9 O -0.516 6.516 10 N -0.210 5.210 11 C -0.469 4.469 12 H 0.098 0.902 13 C -0.163 4.163 14 N -0.529 5.529 15 Si 0.745 3.255 16 H -0.185 1.185 17 H -0.211 1.211 18 H -0.196 1.196 19 C 0.032 3.968 20 C -0.109 4.109 21 C -0.131 4.131 22 C -0.147 4.147 23 C -0.136 4.136 24 C -0.146 4.146 25 C -0.132 4.132 26 C -0.127 4.127 27 C -0.204 4.204 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.141 0.859 31 H 0.173 0.827 32 H 0.165 0.835 33 H 0.253 0.747 34 H 0.089 0.911 35 H 0.086 0.914 36 H 0.091 0.909 37 H 0.131 0.869 38 H 0.160 0.840 39 H 0.172 0.828 40 H 0.161 0.839 41 H 0.126 0.874 42 H 0.135 0.865 43 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -7.483 -8.914 6.163 13.170 hybrid contribution -0.133 1.148 -0.961 1.504 sum -7.617 -7.766 5.202 12.057 Atomic orbital electron populations 1.23300 0.76918 1.05464 1.01899 1.86027 1.23036 1.26191 1.89184 1.19043 0.92640 0.84310 0.99260 1.20391 0.91476 0.98148 1.04695 1.20873 1.00574 0.89824 1.02373 1.17861 0.92175 0.84583 1.02438 1.42621 1.25326 1.06896 1.57453 1.16059 0.82916 0.81727 0.80901 1.90717 1.25940 1.84783 1.50157 1.42887 1.24410 1.05179 1.48555 1.18760 0.92977 1.09811 1.25320 0.90238 1.25706 0.97737 0.97775 0.95094 1.69815 1.21933 1.25590 1.35574 0.86255 0.81435 0.79756 0.78045 1.18515 1.21104 1.19553 1.20476 0.97152 0.89224 0.89912 1.20244 0.97244 0.98309 0.95123 1.21218 1.00181 0.98279 0.93465 1.21406 0.97744 0.99721 0.95878 1.21469 0.95477 0.96326 1.00342 1.21395 1.00568 1.00418 0.92187 1.21153 0.95712 0.98914 0.97399 1.21001 0.93454 0.98202 1.00043 1.21221 1.00826 0.91063 1.07250 0.92374 0.92122 0.85925 0.82743 0.83474 0.74652 0.91066 0.91412 0.90893 0.86857 0.83952 0.82837 0.83895 0.87441 0.86478 0.83681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.81 113.37 1.11 1.41 16 2 O -0.33 -7.92 10.50 -93.24 -0.98 -8.89 16 3 C 0.09 2.59 6.69 22.50 0.15 2.74 16 4 C -0.13 -3.44 9.98 22.35 0.22 -3.22 16 5 C -0.12 -3.47 9.96 22.38 0.22 -3.25 16 6 C 0.13 4.61 6.32 38.11 0.24 4.85 16 7 N -0.68 -27.99 5.24 -317.06 -1.66 -29.65 16 8 C 0.68 31.90 7.98 179.06 1.43 33.33 16 9 O -0.63 -30.71 12.42 -4.02 -0.05 -30.76 16 10 N -0.49 -23.22 2.13 -656.48 -1.40 -24.62 16 11 C -0.34 -17.35 8.97 84.01 0.75 -16.60 16 12 H 0.08 4.26 7.14 -2.91 -0.02 4.24 16 13 C 0.04 2.15 5.33 84.90 0.45 2.60 16 14 N -0.89 -47.86 13.96 21.66 0.30 -47.56 16 15 Si 0.92 41.33 24.93 68.60 1.71 43.04 16 16 H -0.26 -11.01 6.72 99.48 0.67 -10.34 16 17 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 18 H -0.27 -12.55 7.11 99.48 0.71 -11.85 16 19 C 0.16 6.96 4.19 85.63 0.36 7.32 16 20 C -0.11 -4.44 5.45 -19.87 -0.11 -4.55 16 21 C -0.11 -4.26 9.53 22.27 0.21 -4.05 16 22 C -0.13 -3.96 10.05 22.27 0.22 -3.74 16 23 C -0.12 -3.26 10.05 22.27 0.22 -3.03 16 24 C -0.13 -3.96 10.05 22.27 0.22 -3.74 16 25 C -0.11 -4.35 9.69 22.27 0.22 -4.14 16 26 C -0.11 -3.87 8.66 22.38 0.19 -3.68 16 27 C -0.18 -5.45 9.03 22.35 0.20 -5.25 16 28 H 0.06 0.88 7.66 -2.39 -0.02 0.86 16 29 H 0.06 0.88 7.66 -2.39 -0.02 0.86 16 30 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.15 3.30 8.06 -2.91 -0.02 3.27 16 32 H 0.15 3.80 8.06 -2.91 -0.02 3.78 16 33 H 0.42 16.68 6.92 -92.71 -0.64 16.04 16 34 H 0.28 14.05 8.31 -92.71 -0.77 13.28 16 35 H 0.07 3.06 3.40 -2.39 -0.01 3.05 16 36 H 0.07 3.23 7.46 -2.38 -0.02 3.22 16 37 H 0.11 4.55 7.15 -2.91 -0.02 4.53 16 38 H 0.14 3.48 8.06 -2.91 -0.02 3.46 16 39 H 0.15 3.01 8.06 -2.91 -0.02 2.99 16 40 H 0.14 3.58 8.06 -2.91 -0.02 3.56 16 41 H 0.11 4.38 8.06 -2.91 -0.02 4.36 16 42 H 0.12 4.82 6.27 -2.91 -0.02 4.80 16 43 H 0.15 3.51 6.29 -2.91 -0.02 3.49 16 Total: -1.00 -63.10 356.57 4.62 -58.47 By element: Atomic # 1 Polarization: 42.59 SS G_CDS: 0.37 Total: 42.96 kcal Atomic # 6 Polarization: -9.32 SS G_CDS: 6.33 Total: -3.00 kcal Atomic # 7 Polarization: -99.07 SS G_CDS: -2.76 Total: -101.83 kcal Atomic # 8 Polarization: -38.62 SS G_CDS: -1.03 Total: -39.65 kcal Atomic # 14 Polarization: 41.33 SS G_CDS: 1.71 Total: 43.04 kcal Total: -63.10 4.62 -58.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000139577804.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.043 kcal (2) G-P(sol) polarization free energy of solvation -63.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds