Wall clock time and date at job start Tue Mar 31 2020 14:37:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35427 * 117.00170 * 2 1 4 4 N 1.32234 * 119.79896 * 359.97438 * 3 2 1 5 5 C 1.31877 * 121.79871 * 179.97438 * 4 3 2 6 6 C 1.38359 * 121.18600 * 0.02562 * 5 4 3 7 7 C 1.38334 * 119.45967 * 359.69247 * 6 5 4 8 8 C 1.39993 * 118.34581 * 0.56589 * 7 6 5 9 9 C 1.47526 * 120.59862 * 179.70730 * 8 7 6 10 10 O 1.21587 * 120.00160 * 179.72630 * 9 8 7 11 11 N 1.34779 * 119.99682 * 359.73005 * 9 8 7 12 12 C 1.46500 * 119.99793 * 179.97438 * 11 9 8 13 13 H 1.09002 * 109.47092 * 34.99824 * 12 11 9 14 14 C 1.52997 * 109.47007 * 154.99772 * 12 11 9 15 15 C 1.50698 * 109.47721 * 294.99977 * 14 12 11 16 16 H 1.08008 * 119.99163 * 0.02562 * 15 14 12 17 17 C 1.37869 * 120.00614 * 180.02562 * 15 14 12 18 18 N 1.31515 * 119.99741 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00175 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47121 * 60.00002 * 19 17 15 21 21 H 1.48503 * 109.47160 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47085 * 299.99898 * 19 17 15 23 23 C 1.50701 * 109.47209 * 274.99865 * 12 11 9 24 24 C 1.38238 * 119.99612 * 319.72689 * 23 12 11 25 25 C 1.38236 * 119.99607 * 179.81010 * 24 23 12 26 26 C 1.38235 * 120.00116 * 0.39532 * 25 24 23 27 27 C 1.38233 * 119.99985 * 359.86014 * 26 25 24 28 28 C 1.38223 * 120.00108 * 140.00075 * 23 12 11 29 29 H 1.09006 * 109.46786 * 299.99843 * 1 2 3 30 30 H 1.09002 * 109.46934 * 59.99428 * 1 2 3 31 31 H 1.08993 * 109.47304 * 180.02562 * 1 2 3 32 32 H 1.08005 * 119.41049 * 179.97438 * 5 4 3 33 33 H 1.07999 * 120.26946 * 179.97438 * 6 5 4 34 34 H 1.07997 * 120.83005 * 180.28250 * 7 6 5 35 35 H 0.97004 * 119.99983 * 359.97438 * 11 9 8 36 36 H 1.09000 * 109.47325 * 54.99943 * 14 12 11 37 37 H 1.09008 * 109.47017 * 174.99852 * 14 12 11 38 38 H 0.97006 * 119.99397 * 180.02562 * 18 17 15 39 39 H 1.08001 * 120.00192 * 359.97438 * 24 23 12 40 40 H 1.08000 * 120.00146 * 180.23159 * 25 24 23 41 41 H 1.08002 * 120.00422 * 179.83385 * 26 25 24 42 42 H 1.08000 * 120.00342 * 179.97438 * 27 26 25 43 43 H 1.07998 * 120.00341 * 359.97438 * 28 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0439 1.2066 0.0000 4 7 1.3198 2.3131 -0.0005 5 6 1.8772 3.5083 0.0000 6 6 3.2528 3.6574 0.0005 7 6 4.0589 2.5332 0.0070 8 6 3.4450 1.2751 0.0007 9 6 4.2570 0.0434 0.0007 10 8 3.7124 -1.0438 0.0002 11 7 5.6024 0.1232 0.0013 12 6 6.4087 -1.0999 0.0019 13 1 5.9061 -1.8667 -0.5877 14 6 7.7812 -0.8063 -0.6072 15 6 7.6180 -0.4371 -2.0591 16 1 6.6336 -0.4138 -2.5029 17 6 8.7251 -0.1291 -2.8208 18 7 9.9236 -0.1569 -2.2802 19 14 8.5227 0.3279 -4.6208 20 1 7.6640 1.5343 -4.7317 21 1 9.8549 0.6130 -5.2119 22 1 7.8884 -0.7999 -5.3494 23 6 6.5812 -1.5873 1.4174 24 6 6.8076 -0.6820 2.4373 25 6 6.9619 -1.1287 3.7364 26 6 6.8979 -2.4813 4.0144 27 6 6.6767 -3.3870 2.9937 28 6 6.5186 -2.9399 1.6952 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.2487 4.3867 -0.0009 33 1 3.6935 4.6433 0.0005 34 1 5.1350 2.6239 0.0121 35 1 6.0368 0.9905 0.0014 36 1 8.2466 0.0214 -0.0720 37 1 8.4117 -1.6918 -0.5261 38 1 10.7026 0.0602 -2.8161 39 1 6.8614 0.3745 2.2195 40 1 7.1351 -0.4212 4.5337 41 1 7.0211 -2.8306 5.0289 42 1 6.6271 -4.4437 3.2108 43 1 6.3456 -3.6475 0.8978 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153303521.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:23 Heat of formation + Delta-G solvation = -12.655843 kcal Electronic energy + Delta-G solvation = -27292.639532 eV Core-core repulsion = 23496.141919 eV Total energy + Delta-G solvation = -3796.497613 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.83466 -39.37108 -38.17348 -37.83544 -35.13544 -33.08097 -32.52833 -31.08532 -30.61474 -30.36825 -28.76267 -27.24672 -25.25849 -24.21607 -22.90235 -22.28115 -21.93629 -20.71934 -19.71830 -18.47752 -17.38570 -17.06859 -16.62320 -16.14138 -16.03442 -15.36425 -15.09397 -14.85617 -14.53319 -14.39642 -14.12471 -14.11525 -13.61579 -13.34761 -13.00915 -12.97856 -12.65745 -12.57153 -12.45129 -12.09771 -11.76032 -11.55388 -11.23795 -11.12905 -10.92486 -10.71700 -10.63130 -10.44766 -10.00434 -9.98071 -9.77066 -9.36805 -9.24891 -8.61047 -8.51578 -8.45428 -8.34408 -8.16086 -6.09586 -4.13032 0.71066 1.19515 1.80347 1.82854 3.08130 3.19673 3.28105 3.33317 3.36743 3.64384 3.95872 4.19446 4.28556 4.39671 4.70546 4.83543 5.00170 5.14438 5.26674 5.27034 5.28308 5.28726 5.29588 5.38325 5.47423 5.57255 5.58220 5.79412 5.92838 5.96111 5.99873 6.18473 6.26775 6.37833 6.45817 6.59351 6.86654 6.87581 6.91815 7.12767 7.22957 7.42798 7.48804 7.62251 7.68924 7.87229 8.13255 8.25818 8.78508 8.92845 9.52089 11.00812 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.007655 B = 0.005200 C = 0.003604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3656.627080 B = 5383.536429 C = 7767.112440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.268 6.268 3 C 0.367 3.633 4 N -0.549 5.549 5 C 0.157 3.843 6 C -0.220 4.220 7 C -0.008 4.008 8 C -0.199 4.199 9 C 0.559 3.441 10 O -0.524 6.524 11 N -0.697 5.697 12 C 0.186 3.814 13 H 0.088 0.912 14 C 0.024 3.976 15 C -0.521 4.521 16 H 0.058 0.942 17 C 0.062 3.938 18 N -0.892 5.892 19 Si 0.891 3.109 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.276 1.276 23 C -0.071 4.071 24 C -0.108 4.108 25 C -0.125 4.125 26 C -0.135 4.135 27 C -0.123 4.123 28 C -0.107 4.107 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.096 0.904 32 H 0.161 0.839 33 H 0.143 0.857 34 H 0.148 0.852 35 H 0.397 0.603 36 H 0.024 0.976 37 H 0.035 0.965 38 H 0.262 0.738 39 H 0.115 0.885 40 H 0.114 0.886 41 H 0.113 0.887 42 H 0.116 0.884 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.536 5.533 9.232 16.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.172 6.172 3 C 0.187 3.813 4 N -0.274 5.274 5 C 0.001 3.999 6 C -0.241 4.241 7 C -0.034 4.034 8 C -0.205 4.205 9 C 0.344 3.656 10 O -0.401 6.401 11 N -0.347 5.347 12 C 0.082 3.918 13 H 0.106 0.894 14 C -0.013 4.013 15 C -0.559 4.559 16 H 0.076 0.924 17 C -0.140 4.140 18 N -0.530 5.530 19 Si 0.719 3.281 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.202 1.202 23 C -0.072 4.072 24 C -0.126 4.126 25 C -0.143 4.143 26 C -0.153 4.153 27 C -0.141 4.141 28 C -0.126 4.126 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.115 0.885 32 H 0.179 0.821 33 H 0.160 0.840 34 H 0.166 0.834 35 H 0.233 0.767 36 H 0.043 0.957 37 H 0.053 0.947 38 H 0.072 0.928 39 H 0.133 0.867 40 H 0.132 0.868 41 H 0.131 0.869 42 H 0.134 0.866 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -13.527 4.371 9.173 16.919 hybrid contribution 0.921 1.024 -1.038 1.725 sum -12.606 5.396 8.135 15.944 Atomic orbital electron populations 1.22919 0.77960 1.03108 1.02014 1.86568 1.21939 1.23015 1.85705 1.19872 0.88240 0.84996 0.88174 1.67436 1.40444 0.98705 1.20768 1.22581 0.93061 0.93658 0.90643 1.21918 0.94699 0.99926 1.07540 1.21765 1.01069 0.90530 0.90028 1.20227 0.91633 0.95530 1.13094 1.17726 0.82476 0.87967 0.77430 1.90789 1.71729 1.28261 1.49347 1.45853 1.04875 1.10322 1.73661 1.20256 0.94973 0.86220 0.90356 0.89361 1.19390 0.88286 0.98146 0.95477 1.21106 0.93175 1.46821 0.94821 0.92420 1.24970 0.95241 0.95462 0.98349 1.69951 0.97994 1.48656 1.36447 0.86672 0.77128 0.79062 0.85250 1.20275 1.21297 1.20194 1.20544 0.96574 0.93541 0.96536 1.20893 0.99840 0.99420 0.92440 1.21032 1.01209 0.95618 0.96478 1.20989 1.02143 0.93520 0.98664 1.21040 1.00802 0.99145 0.93078 1.21018 0.99661 0.95343 0.96545 0.92483 0.92416 0.88528 0.82138 0.83965 0.83420 0.76740 0.95738 0.94661 0.92815 0.86659 0.86779 0.86872 0.86615 0.86143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.42 10.38 101.05 1.05 1.47 16 2 O -0.27 -4.51 8.58 -39.74 -0.34 -4.85 16 3 C 0.37 5.88 7.51 -16.61 -0.12 5.76 16 4 N -0.55 -7.44 9.21 -12.98 -0.12 -7.55 16 5 C 0.16 1.64 11.17 -17.49 -0.20 1.44 16 6 C -0.22 -2.21 10.09 -39.50 -0.40 -2.61 16 7 C -0.01 -0.10 9.64 -38.89 -0.37 -0.47 16 8 C -0.20 -3.20 5.90 -104.69 -0.62 -3.82 16 9 C 0.56 10.67 7.73 -12.47 -0.10 10.58 16 10 O -0.52 -11.71 14.85 -16.48 -0.24 -11.95 16 11 N -0.70 -12.84 4.00 -55.98 -0.22 -13.06 16 12 C 0.19 3.82 2.11 -69.08 -0.15 3.67 16 13 H 0.09 1.99 7.44 -51.93 -0.39 1.61 16 14 C 0.02 0.58 4.49 -27.89 -0.13 0.45 16 15 C -0.52 -13.70 8.84 -34.44 -0.30 -14.00 16 16 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 17 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 18 N -0.89 -25.32 13.29 55.43 0.74 -24.59 16 19 Si 0.89 20.97 29.54 -169.99 -5.02 15.95 16 20 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 21 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 C -0.07 -1.33 4.91 -104.63 -0.51 -1.84 16 24 C -0.11 -1.83 9.32 -39.58 -0.37 -2.20 16 25 C -0.13 -1.89 10.05 -39.58 -0.40 -2.28 16 26 C -0.13 -1.95 10.05 -39.58 -0.40 -2.35 16 27 C -0.12 -1.88 10.05 -39.58 -0.40 -2.28 16 28 C -0.11 -1.90 9.67 -39.59 -0.38 -2.28 16 29 H 0.06 0.62 8.11 -51.93 -0.42 0.19 16 30 H 0.06 0.64 8.10 -51.93 -0.42 0.22 16 31 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.16 1.07 8.06 -52.48 -0.42 0.64 16 33 H 0.14 0.98 8.06 -52.49 -0.42 0.55 16 34 H 0.15 1.58 6.51 -52.49 -0.34 1.24 16 35 H 0.40 6.54 6.70 -40.82 -0.27 6.27 16 36 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.04 0.92 8.14 -51.92 -0.42 0.49 16 38 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 39 H 0.12 1.81 7.73 -52.49 -0.41 1.41 16 40 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 41 H 0.11 1.32 8.06 -52.49 -0.42 0.89 16 42 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 43 H 0.12 2.04 8.04 -52.49 -0.42 1.62 16 LS Contribution 371.53 15.07 5.60 5.60 Total: -1.00 -33.21 371.53 -9.10 -42.31 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -5.59 Total: 7.32 kcal Atomic # 6 Polarization: -5.29 SS G_CDS: -3.89 Total: -9.18 kcal Atomic # 7 Polarization: -45.60 SS G_CDS: 0.39 Total: -45.20 kcal Atomic # 8 Polarization: -16.22 SS G_CDS: -0.59 Total: -16.80 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.21 -9.10 -42.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153303521.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.657 kcal (2) G-P(sol) polarization free energy of solvation -33.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds