Wall clock time and date at job start Tue Mar 31 2020 14:37:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35427 * 117.00170 * 2 1 4 4 N 1.32234 * 119.79896 * 359.97438 * 3 2 1 5 5 C 1.31877 * 121.79871 * 179.97438 * 4 3 2 6 6 C 1.38359 * 121.18600 * 0.02562 * 5 4 3 7 7 C 1.38334 * 119.45967 * 359.69247 * 6 5 4 8 8 C 1.39993 * 118.34581 * 0.56589 * 7 6 5 9 9 C 1.47526 * 120.59862 * 179.70730 * 8 7 6 10 10 O 1.21587 * 120.00160 * 179.72630 * 9 8 7 11 11 N 1.34779 * 119.99682 * 359.73005 * 9 8 7 12 12 C 1.46500 * 119.99793 * 179.97438 * 11 9 8 13 13 H 1.09002 * 109.47092 * 34.99824 * 12 11 9 14 14 C 1.52997 * 109.47007 * 154.99772 * 12 11 9 15 15 C 1.50698 * 109.47721 * 294.99977 * 14 12 11 16 16 H 1.08008 * 119.99163 * 0.02562 * 15 14 12 17 17 C 1.37869 * 120.00614 * 180.02562 * 15 14 12 18 18 N 1.31515 * 119.99741 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00175 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47121 * 60.00002 * 19 17 15 21 21 H 1.48503 * 109.47160 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47085 * 299.99898 * 19 17 15 23 23 C 1.50701 * 109.47209 * 274.99865 * 12 11 9 24 24 C 1.38238 * 119.99612 * 319.72689 * 23 12 11 25 25 C 1.38236 * 119.99607 * 179.81010 * 24 23 12 26 26 C 1.38235 * 120.00116 * 0.39532 * 25 24 23 27 27 C 1.38233 * 119.99985 * 359.86014 * 26 25 24 28 28 C 1.38223 * 120.00108 * 140.00075 * 23 12 11 29 29 H 1.09006 * 109.46786 * 299.99843 * 1 2 3 30 30 H 1.09002 * 109.46934 * 59.99428 * 1 2 3 31 31 H 1.08993 * 109.47304 * 180.02562 * 1 2 3 32 32 H 1.08005 * 119.41049 * 179.97438 * 5 4 3 33 33 H 1.07999 * 120.26946 * 179.97438 * 6 5 4 34 34 H 1.07997 * 120.83005 * 180.28250 * 7 6 5 35 35 H 0.97004 * 119.99983 * 359.97438 * 11 9 8 36 36 H 1.09000 * 109.47325 * 54.99943 * 14 12 11 37 37 H 1.09008 * 109.47017 * 174.99852 * 14 12 11 38 38 H 0.97006 * 119.99397 * 180.02562 * 18 17 15 39 39 H 1.08001 * 120.00192 * 359.97438 * 24 23 12 40 40 H 1.08000 * 120.00146 * 180.23159 * 25 24 23 41 41 H 1.08002 * 120.00422 * 179.83385 * 26 25 24 42 42 H 1.08000 * 120.00342 * 179.97438 * 27 26 25 43 43 H 1.07998 * 120.00341 * 359.97438 * 28 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0439 1.2066 0.0000 4 7 1.3198 2.3131 -0.0005 5 6 1.8772 3.5083 0.0000 6 6 3.2528 3.6574 0.0005 7 6 4.0589 2.5332 0.0070 8 6 3.4450 1.2751 0.0007 9 6 4.2570 0.0434 0.0007 10 8 3.7124 -1.0438 0.0002 11 7 5.6024 0.1232 0.0013 12 6 6.4087 -1.0999 0.0019 13 1 5.9061 -1.8667 -0.5877 14 6 7.7812 -0.8063 -0.6072 15 6 7.6180 -0.4371 -2.0591 16 1 6.6336 -0.4138 -2.5029 17 6 8.7251 -0.1291 -2.8208 18 7 9.9236 -0.1569 -2.2802 19 14 8.5227 0.3279 -4.6208 20 1 7.6640 1.5343 -4.7317 21 1 9.8549 0.6130 -5.2119 22 1 7.8884 -0.7999 -5.3494 23 6 6.5812 -1.5873 1.4174 24 6 6.8076 -0.6820 2.4373 25 6 6.9619 -1.1287 3.7364 26 6 6.8979 -2.4813 4.0144 27 6 6.6767 -3.3870 2.9937 28 6 6.5186 -2.9399 1.6952 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.2487 4.3867 -0.0009 33 1 3.6935 4.6433 0.0005 34 1 5.1350 2.6239 0.0121 35 1 6.0368 0.9905 0.0014 36 1 8.2466 0.0214 -0.0720 37 1 8.4117 -1.6918 -0.5261 38 1 10.7026 0.0602 -2.8161 39 1 6.8614 0.3745 2.2195 40 1 7.1351 -0.4212 4.5337 41 1 7.0211 -2.8306 5.0289 42 1 6.6271 -4.4437 3.2108 43 1 6.3456 -3.6475 0.8978 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153303521.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:22 Heat of formation + Delta-G solvation = -33.267395 kcal Electronic energy + Delta-G solvation = -27293.533316 eV Core-core repulsion = 23496.141919 eV Total energy + Delta-G solvation = -3797.391397 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.93868 -40.73606 -39.51140 -38.88972 -36.76906 -34.78918 -33.95079 -32.30394 -31.76092 -31.58719 -30.51419 -28.22315 -26.90206 -25.46226 -23.98402 -23.74372 -23.35895 -22.08195 -21.20055 -19.55742 -18.80485 -18.37310 -18.12796 -17.59084 -17.11779 -16.81714 -16.50628 -16.21252 -15.94419 -15.67262 -15.47111 -15.13870 -14.93437 -14.54037 -14.34990 -14.19602 -14.08882 -13.96070 -13.67441 -13.53298 -13.43281 -12.91693 -12.71169 -12.65001 -12.45121 -12.20369 -12.15729 -11.87893 -11.59803 -11.34574 -11.15291 -11.02076 -10.66226 -10.54078 -10.01989 -9.75609 -9.55008 -9.49733 -8.19979 -6.30119 -0.32036 0.23407 0.51168 0.56025 1.39437 1.41522 1.49360 1.94125 2.08847 2.25082 2.39914 2.82851 2.97263 3.13831 3.29472 3.76753 3.80798 3.97415 4.01213 4.03957 4.20689 4.26647 4.31881 4.38843 4.39249 4.41580 4.54768 4.65222 4.69003 4.76452 4.78593 4.90242 5.10366 5.12361 5.19889 5.26733 5.42185 5.42625 5.60191 5.60961 5.63930 5.77785 5.90551 6.16201 6.20626 6.22521 6.62956 6.76581 6.81689 7.32967 7.38778 8.90400 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.007655 B = 0.005200 C = 0.003604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3656.627080 B = 5383.536429 C = 7767.112440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.304 6.304 3 C 0.349 3.651 4 N -0.556 5.556 5 C 0.164 3.836 6 C -0.204 4.204 7 C -0.009 4.009 8 C -0.233 4.233 9 C 0.557 3.443 10 O -0.568 6.568 11 N -0.691 5.691 12 C 0.202 3.798 13 H 0.056 0.944 14 C 0.040 3.960 15 C -0.531 4.531 16 H 0.050 0.950 17 C 0.015 3.985 18 N -0.923 5.923 19 Si 0.953 3.047 20 H -0.265 1.265 21 H -0.281 1.281 22 H -0.279 1.279 23 C -0.098 4.098 24 C -0.121 4.121 25 C -0.125 4.125 26 C -0.129 4.129 27 C -0.124 4.124 28 C -0.134 4.134 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.110 0.890 32 H 0.207 0.793 33 H 0.185 0.815 34 H 0.161 0.839 35 H 0.406 0.594 36 H 0.016 0.984 37 H 0.005 0.995 38 H 0.264 0.736 39 H 0.122 0.878 40 H 0.147 0.853 41 H 0.152 0.848 42 H 0.144 0.856 43 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.309 8.101 10.413 18.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.209 6.209 3 C 0.169 3.831 4 N -0.281 5.281 5 C 0.008 3.992 6 C -0.223 4.223 7 C -0.035 4.035 8 C -0.239 4.239 9 C 0.344 3.656 10 O -0.449 6.449 11 N -0.341 5.341 12 C 0.097 3.903 13 H 0.074 0.926 14 C 0.002 3.998 15 C -0.569 4.569 16 H 0.068 0.932 17 C -0.184 4.184 18 N -0.563 5.563 19 Si 0.778 3.222 20 H -0.190 1.190 21 H -0.206 1.206 22 H -0.204 1.204 23 C -0.099 4.099 24 C -0.140 4.140 25 C -0.142 4.142 26 C -0.147 4.147 27 C -0.142 4.142 28 C -0.152 4.152 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.129 0.871 32 H 0.224 0.776 33 H 0.203 0.797 34 H 0.178 0.822 35 H 0.243 0.757 36 H 0.034 0.966 37 H 0.023 0.977 38 H 0.073 0.927 39 H 0.140 0.860 40 H 0.165 0.835 41 H 0.169 0.831 42 H 0.161 0.839 43 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -14.302 6.964 10.358 18.983 hybrid contribution 1.113 0.289 -1.341 1.766 sum -13.189 7.253 9.018 17.546 Atomic orbital electron populations 1.23111 0.76076 1.04326 1.02650 1.86513 1.24118 1.24321 1.85997 1.20029 0.88372 0.85536 0.89125 1.67537 1.40367 0.99049 1.21163 1.23471 0.94136 0.93789 0.87835 1.22382 0.94338 1.00732 1.04897 1.22026 1.02089 0.89975 0.89393 1.20084 0.91673 0.95296 1.16831 1.18237 0.82377 0.88768 0.76186 1.90744 1.72395 1.30244 1.51483 1.45694 1.04896 1.09917 1.73595 1.19739 0.92814 0.86315 0.91464 0.92621 1.19122 0.89718 0.96196 0.94732 1.21336 0.92880 1.46592 0.96068 0.93174 1.25718 0.94882 0.95361 1.02426 1.70059 0.98671 1.49551 1.38020 0.85691 0.77363 0.78950 0.80175 1.18971 1.20640 1.20430 1.20445 0.99116 0.94585 0.95787 1.21073 1.00236 0.99507 0.93138 1.21444 0.99764 0.96806 0.96223 1.21472 1.00024 0.93086 1.00132 1.21385 0.99705 1.01002 0.92062 1.21173 1.01090 0.94995 0.97960 0.91599 0.91862 0.87145 0.77617 0.79746 0.82201 0.75714 0.96594 0.97708 0.92657 0.86037 0.83488 0.83055 0.83863 0.87057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.79 10.38 113.37 1.18 1.97 16 2 O -0.30 -10.66 8.58 -66.41 -0.57 -11.23 16 3 C 0.35 11.27 7.51 85.13 0.64 11.91 16 4 N -0.56 -14.15 9.21 -308.00 -2.84 -16.99 16 5 C 0.16 2.81 11.17 84.71 0.95 3.76 16 6 C -0.20 -3.30 10.09 22.32 0.23 -3.08 16 7 C -0.01 -0.21 9.64 22.72 0.22 0.01 16 8 C -0.23 -7.62 5.90 -19.91 -0.12 -7.74 16 9 C 0.56 22.50 7.73 86.69 0.67 23.17 16 10 O -0.57 -27.31 14.85 16.83 0.25 -27.06 16 11 N -0.69 -26.87 4.00 -449.28 -1.80 -28.66 16 12 C 0.20 8.91 2.11 44.24 0.09 9.00 16 13 H 0.06 2.78 7.44 -2.39 -0.02 2.76 16 14 C 0.04 2.01 4.49 29.85 0.13 2.14 16 15 C -0.53 -28.99 8.84 25.60 0.23 -28.76 16 16 H 0.05 2.76 7.74 -2.91 -0.02 2.74 16 17 C 0.02 0.83 5.46 84.65 0.46 1.30 16 18 N -0.92 -53.49 13.29 21.44 0.28 -53.20 16 19 Si 0.95 43.37 29.54 68.60 2.03 45.40 16 20 H -0.26 -11.47 7.11 99.48 0.71 -10.77 16 21 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 22 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 23 C -0.10 -3.89 4.91 -19.87 -0.10 -3.99 16 24 C -0.12 -4.16 9.32 22.27 0.21 -3.95 16 25 C -0.12 -3.51 10.05 22.27 0.22 -3.29 16 26 C -0.13 -3.42 10.05 22.27 0.22 -3.20 16 27 C -0.12 -3.69 10.05 22.27 0.22 -3.47 16 28 C -0.13 -4.97 9.67 22.27 0.22 -4.75 16 29 H 0.07 1.41 8.11 -2.38 -0.02 1.39 16 30 H 0.06 1.40 8.10 -2.39 -0.02 1.38 16 31 H 0.11 2.21 8.14 -2.39 -0.02 2.20 16 32 H 0.21 1.59 8.06 -2.91 -0.02 1.56 16 33 H 0.19 1.46 8.06 -2.91 -0.02 1.44 16 34 H 0.16 3.21 6.51 -2.91 -0.02 3.19 16 35 H 0.41 13.90 6.70 -92.71 -0.62 13.28 16 36 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.00 0.26 8.14 -2.38 -0.02 0.24 16 38 H 0.26 14.52 8.31 -92.70 -0.77 13.75 16 39 H 0.12 3.86 7.73 -2.91 -0.02 3.83 16 40 H 0.15 3.13 8.06 -2.91 -0.02 3.10 16 41 H 0.15 2.86 8.06 -2.91 -0.02 2.83 16 42 H 0.14 3.38 8.06 -2.91 -0.02 3.36 16 43 H 0.11 4.16 8.04 -2.91 -0.02 4.13 16 Total: -1.00 -76.72 371.53 3.44 -73.28 By element: Atomic # 1 Polarization: 27.04 SS G_CDS: 0.41 Total: 27.45 kcal Atomic # 6 Polarization: -14.64 SS G_CDS: 5.67 Total: -8.97 kcal Atomic # 7 Polarization: -94.51 SS G_CDS: -4.35 Total: -98.86 kcal Atomic # 8 Polarization: -37.98 SS G_CDS: -0.32 Total: -38.29 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Total: -76.72 3.44 -73.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153303521.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.009 kcal (2) G-P(sol) polarization free energy of solvation -76.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds