Wall clock time and date at job start Tue Mar 31 2020 14:37:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35429 * 116.99621 * 2 1 4 4 N 1.32243 * 119.79783 * 0.29332 * 3 2 1 5 5 C 1.31882 * 121.79509 * 180.33653 * 4 3 2 6 6 C 1.38356 * 121.18762 * 359.65268 * 5 4 3 7 7 C 1.38334 * 119.45771 * 0.02562 * 6 5 4 8 8 C 1.39982 * 118.35142 * 359.97438 * 7 6 5 9 9 C 1.47524 * 120.60257 * 180.02562 * 8 7 6 10 10 O 1.21586 * 120.00709 * 179.97438 * 9 8 7 11 11 N 1.34777 * 119.99653 * 359.97438 * 9 8 7 12 12 C 1.46494 * 120.00188 * 180.02562 * 11 9 8 13 13 H 1.09000 * 109.47081 * 325.00162 * 12 11 9 14 14 C 1.53001 * 109.47302 * 205.00083 * 12 11 9 15 15 C 1.50701 * 109.47232 * 64.99671 * 14 12 11 16 16 H 1.08001 * 119.99717 * 0.02562 * 15 14 12 17 17 C 1.37876 * 119.99813 * 179.97438 * 15 14 12 18 18 N 1.31510 * 120.00272 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 119.99744 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47030 * 89.99892 * 19 17 15 21 21 H 1.48498 * 109.46912 * 210.00482 * 19 17 15 22 22 H 1.48500 * 109.47109 * 329.99942 * 19 17 15 23 23 C 1.50703 * 109.47581 * 84.99858 * 12 11 9 24 24 C 1.38235 * 120.00292 * 220.00303 * 23 12 11 25 25 C 1.38230 * 119.99899 * 179.97438 * 24 23 12 26 26 C 1.38235 * 120.00326 * 359.95697 * 25 24 23 27 27 C 1.38234 * 119.99814 * 359.97438 * 26 25 24 28 28 C 1.38234 * 119.99503 * 39.97596 * 23 12 11 29 29 H 1.08993 * 109.47123 * 299.99755 * 1 2 3 30 30 H 1.08996 * 109.47178 * 60.00444 * 1 2 3 31 31 H 1.09005 * 109.46758 * 180.02562 * 1 2 3 32 32 H 1.07999 * 119.40832 * 179.67995 * 5 4 3 33 33 H 1.08004 * 120.27363 * 180.02562 * 6 5 4 34 34 H 1.08005 * 120.82279 * 179.97438 * 7 6 5 35 35 H 0.97005 * 119.99889 * 359.97438 * 11 9 8 36 36 H 1.09007 * 109.47213 * 184.99910 * 14 12 11 37 37 H 1.08998 * 109.47120 * 304.99384 * 14 12 11 38 38 H 0.97001 * 120.00530 * 179.97438 * 18 17 15 39 39 H 1.08001 * 119.99730 * 359.97438 * 24 23 12 40 40 H 1.08000 * 120.00376 * 179.97438 * 25 24 23 41 41 H 1.08000 * 120.00616 * 179.72578 * 26 25 24 42 42 H 1.08001 * 120.00299 * 179.97438 * 27 26 25 43 43 H 1.07997 * 120.00455 * 0.02562 * 28 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0438 1.2067 0.0000 4 7 1.3196 2.3132 0.0059 5 6 1.8769 3.5085 -0.0005 6 6 3.2524 3.6577 -0.0065 7 6 4.0586 2.5335 -0.0063 8 6 3.4449 1.2754 0.0005 9 6 4.2570 0.0438 0.0015 10 8 3.7126 -1.0434 0.0079 11 7 5.6024 0.1237 -0.0047 12 6 6.4088 -1.0993 -0.0042 13 1 5.9087 -1.8641 0.5899 14 6 7.7837 -0.8034 0.5984 15 6 7.6260 -0.4292 2.0497 16 1 6.6435 -0.4053 2.4975 17 6 8.7362 -0.1185 2.8060 18 7 9.9326 -0.1481 2.2608 19 14 8.5409 0.3447 4.6051 20 1 8.6202 -0.8790 5.4427 21 1 9.6240 1.2827 4.9952 22 1 7.2231 0.9986 4.8077 23 6 6.5758 -1.5916 -1.4187 24 6 6.5122 -2.9452 -1.6916 25 6 6.6649 -3.3966 -2.9892 26 6 6.8802 -2.4944 -4.0141 27 6 6.9424 -1.1406 -3.7414 28 6 6.7920 -0.6893 -2.4435 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.2483 4.3867 -0.0006 33 1 3.6931 4.6437 -0.0112 34 1 5.1348 2.6244 -0.0114 35 1 6.0367 0.9911 -0.0102 36 1 8.4140 -1.6891 0.5179 37 1 8.2469 0.0224 0.0585 38 1 10.7137 0.0708 2.7927 39 1 6.3433 -3.6501 -0.8909 40 1 6.6157 -4.4542 -3.2024 41 1 7.0039 -2.8473 -5.0273 42 1 7.1110 -0.4357 -4.5421 43 1 6.8416 0.3683 -2.2304 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153303657.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:26 Heat of formation + Delta-G solvation = -12.690995 kcal Electronic energy + Delta-G solvation = -27294.173007 eV Core-core repulsion = 23497.673870 eV Total energy + Delta-G solvation = -3796.499137 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.83385 -39.37163 -38.17305 -37.83486 -35.13570 -33.08090 -32.52930 -31.08467 -30.61490 -30.36771 -28.76468 -27.24679 -25.25927 -24.21639 -22.90211 -22.28016 -21.93823 -20.71930 -19.71842 -18.47708 -17.38600 -17.06835 -16.62516 -16.14467 -16.03334 -15.36430 -15.09380 -14.85591 -14.53087 -14.39640 -14.12468 -14.11449 -13.61449 -13.34765 -13.00866 -12.97841 -12.66024 -12.57075 -12.45521 -12.09991 -11.76027 -11.55682 -11.23805 -11.12053 -10.93435 -10.72949 -10.61094 -10.45226 -10.00238 -9.98201 -9.77329 -9.35942 -9.24542 -8.60993 -8.51689 -8.45777 -8.34429 -8.16062 -6.09820 -4.13193 0.71144 1.19547 1.80324 1.82842 3.08167 3.19716 3.26939 3.34021 3.37413 3.64420 3.95919 4.19470 4.28544 4.39592 4.70594 4.83579 5.00228 5.14447 5.26625 5.26955 5.28307 5.28776 5.29546 5.38306 5.47445 5.57239 5.58246 5.79451 5.92830 5.96063 5.99905 6.18467 6.26817 6.37783 6.45772 6.59308 6.86636 6.87557 6.91820 7.12744 7.22955 7.42771 7.48919 7.62192 7.68928 7.87150 8.13267 8.25704 8.78546 8.93008 9.52006 11.00620 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.007660 B = 0.005200 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3654.666557 B = 5383.162492 C = 7768.553218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.268 6.268 3 C 0.367 3.633 4 N -0.549 5.549 5 C 0.157 3.843 6 C -0.220 4.220 7 C -0.008 4.008 8 C -0.199 4.199 9 C 0.559 3.441 10 O -0.524 6.524 11 N -0.697 5.697 12 C 0.186 3.814 13 H 0.088 0.912 14 C 0.024 3.976 15 C -0.520 4.520 16 H 0.058 0.942 17 C 0.061 3.939 18 N -0.892 5.892 19 Si 0.890 3.110 20 H -0.280 1.280 21 H -0.287 1.287 22 H -0.274 1.274 23 C -0.071 4.071 24 C -0.107 4.107 25 C -0.123 4.123 26 C -0.135 4.135 27 C -0.125 4.125 28 C -0.108 4.108 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.096 0.904 32 H 0.161 0.839 33 H 0.143 0.857 34 H 0.148 0.852 35 H 0.397 0.603 36 H 0.035 0.965 37 H 0.024 0.976 38 H 0.262 0.738 39 H 0.121 0.879 40 H 0.116 0.884 41 H 0.113 0.887 42 H 0.114 0.886 43 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.591 5.501 -9.226 16.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.172 6.172 3 C 0.187 3.813 4 N -0.274 5.274 5 C 0.001 3.999 6 C -0.241 4.241 7 C -0.034 4.034 8 C -0.205 4.205 9 C 0.344 3.656 10 O -0.401 6.401 11 N -0.347 5.347 12 C 0.082 3.918 13 H 0.106 0.894 14 C -0.013 4.013 15 C -0.559 4.559 16 H 0.076 0.924 17 C -0.140 4.140 18 N -0.530 5.530 19 Si 0.718 3.282 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.199 1.199 23 C -0.072 4.072 24 C -0.126 4.126 25 C -0.141 4.141 26 C -0.153 4.153 27 C -0.143 4.143 28 C -0.126 4.126 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.115 0.885 32 H 0.179 0.821 33 H 0.160 0.840 34 H 0.166 0.834 35 H 0.233 0.767 36 H 0.053 0.947 37 H 0.043 0.957 38 H 0.071 0.929 39 H 0.139 0.861 40 H 0.134 0.866 41 H 0.131 0.869 42 H 0.132 0.868 43 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -13.587 4.344 -9.157 16.951 hybrid contribution 0.941 1.016 1.034 1.728 sum -12.646 5.359 -8.123 15.957 Atomic orbital electron populations 1.22919 0.77960 1.03109 1.02014 1.86569 1.21940 1.23011 1.85705 1.19876 0.88241 0.84997 0.88170 1.67443 1.40438 0.98705 1.20768 1.22581 0.93066 0.93657 0.90643 1.21917 0.94697 0.99924 1.07547 1.21763 1.01075 0.90528 0.90022 1.20224 0.91633 0.95533 1.13094 1.17724 0.82475 0.87967 0.77425 1.90788 1.71741 1.28252 1.49350 1.45850 1.04875 1.10319 1.73661 1.20254 0.94971 0.86200 0.90378 0.89362 1.19396 0.88251 0.98145 0.95543 1.21145 0.93215 1.46598 0.94894 0.92360 1.24973 0.95254 0.95479 0.98333 1.69954 0.97979 1.48746 1.36371 0.86617 0.77719 0.78454 0.85383 1.20605 1.21245 1.19890 1.20547 0.96573 0.93547 0.96527 1.21017 0.99660 0.95316 0.96573 1.21037 1.00819 0.99152 0.93054 1.20989 1.02152 0.93529 0.98648 1.21033 1.01205 0.95597 0.96500 1.20892 0.99876 0.99420 0.92413 0.92416 0.92481 0.88529 0.82140 0.83961 0.83414 0.76742 0.94662 0.95727 0.92869 0.86142 0.86616 0.86871 0.86779 0.86662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.42 10.38 101.05 1.05 1.47 16 2 O -0.27 -4.51 8.58 -39.75 -0.34 -4.85 16 3 C 0.37 5.89 7.51 -16.61 -0.12 5.76 16 4 N -0.55 -7.44 9.21 -12.98 -0.12 -7.56 16 5 C 0.16 1.64 11.17 -17.49 -0.20 1.44 16 6 C -0.22 -2.21 10.09 -39.50 -0.40 -2.61 16 7 C -0.01 -0.10 9.64 -38.89 -0.37 -0.47 16 8 C -0.20 -3.20 5.90 -104.69 -0.62 -3.82 16 9 C 0.56 10.68 7.73 -12.47 -0.10 10.59 16 10 O -0.52 -11.72 14.85 -16.48 -0.24 -11.96 16 11 N -0.70 -12.84 3.98 -55.98 -0.22 -13.07 16 12 C 0.19 3.82 2.12 -69.08 -0.15 3.67 16 13 H 0.09 1.99 7.44 -51.93 -0.39 1.60 16 14 C 0.02 0.57 4.49 -27.88 -0.13 0.44 16 15 C -0.52 -13.68 8.84 -34.44 -0.30 -13.98 16 16 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 17 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 18 N -0.89 -25.32 13.29 55.43 0.74 -24.59 16 19 Si 0.89 20.96 29.54 -169.99 -5.02 15.94 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 23 C -0.07 -1.33 4.91 -104.62 -0.51 -1.84 16 24 C -0.11 -1.89 9.67 -39.59 -0.38 -2.28 16 25 C -0.12 -1.88 10.05 -39.59 -0.40 -2.28 16 26 C -0.14 -1.95 10.05 -39.58 -0.40 -2.35 16 27 C -0.13 -1.88 10.05 -39.58 -0.40 -2.28 16 28 C -0.11 -1.83 9.32 -39.58 -0.37 -2.20 16 29 H 0.06 0.64 8.10 -51.93 -0.42 0.22 16 30 H 0.06 0.62 8.11 -51.93 -0.42 0.19 16 31 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.16 1.07 8.06 -52.49 -0.42 0.64 16 33 H 0.14 0.97 8.06 -52.48 -0.42 0.55 16 34 H 0.15 1.58 6.52 -52.48 -0.34 1.24 16 35 H 0.40 6.54 6.70 -40.82 -0.27 6.27 16 36 H 0.04 0.92 8.14 -51.92 -0.42 0.49 16 37 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 39 H 0.12 2.04 8.04 -52.49 -0.42 1.62 16 40 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 41 H 0.11 1.32 8.06 -52.49 -0.42 0.89 16 42 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 43 H 0.12 1.81 7.72 -52.49 -0.41 1.41 16 LS Contribution 371.52 15.07 5.60 5.60 Total: -1.00 -33.27 371.52 -9.10 -42.37 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -5.59 Total: 7.28 kcal Atomic # 6 Polarization: -5.27 SS G_CDS: -3.89 Total: -9.16 kcal Atomic # 7 Polarization: -45.60 SS G_CDS: 0.39 Total: -45.21 kcal Atomic # 8 Polarization: -16.23 SS G_CDS: -0.59 Total: -16.81 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.27 -9.10 -42.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153303657.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.677 kcal (2) G-P(sol) polarization free energy of solvation -33.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds