Wall clock time and date at job start Tue Mar 31 2020 14:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35429 * 116.99621 * 2 1 4 4 N 1.32243 * 119.79783 * 0.29332 * 3 2 1 5 5 C 1.31882 * 121.79509 * 180.33653 * 4 3 2 6 6 C 1.38356 * 121.18762 * 359.65268 * 5 4 3 7 7 C 1.38334 * 119.45771 * 0.02562 * 6 5 4 8 8 C 1.39982 * 118.35142 * 359.97438 * 7 6 5 9 9 C 1.47524 * 120.60257 * 180.02562 * 8 7 6 10 10 O 1.21586 * 120.00709 * 179.97438 * 9 8 7 11 11 N 1.34777 * 119.99653 * 359.97438 * 9 8 7 12 12 C 1.46494 * 120.00188 * 180.02562 * 11 9 8 13 13 H 1.09000 * 109.47081 * 325.00162 * 12 11 9 14 14 C 1.53001 * 109.47302 * 205.00083 * 12 11 9 15 15 C 1.50701 * 109.47232 * 64.99671 * 14 12 11 16 16 H 1.08001 * 119.99717 * 0.02562 * 15 14 12 17 17 C 1.37876 * 119.99813 * 179.97438 * 15 14 12 18 18 N 1.31510 * 120.00272 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 119.99744 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47030 * 89.99892 * 19 17 15 21 21 H 1.48498 * 109.46912 * 210.00482 * 19 17 15 22 22 H 1.48500 * 109.47109 * 329.99942 * 19 17 15 23 23 C 1.50703 * 109.47581 * 84.99858 * 12 11 9 24 24 C 1.38235 * 120.00292 * 220.00303 * 23 12 11 25 25 C 1.38230 * 119.99899 * 179.97438 * 24 23 12 26 26 C 1.38235 * 120.00326 * 359.95697 * 25 24 23 27 27 C 1.38234 * 119.99814 * 359.97438 * 26 25 24 28 28 C 1.38234 * 119.99503 * 39.97596 * 23 12 11 29 29 H 1.08993 * 109.47123 * 299.99755 * 1 2 3 30 30 H 1.08996 * 109.47178 * 60.00444 * 1 2 3 31 31 H 1.09005 * 109.46758 * 180.02562 * 1 2 3 32 32 H 1.07999 * 119.40832 * 179.67995 * 5 4 3 33 33 H 1.08004 * 120.27363 * 180.02562 * 6 5 4 34 34 H 1.08005 * 120.82279 * 179.97438 * 7 6 5 35 35 H 0.97005 * 119.99889 * 359.97438 * 11 9 8 36 36 H 1.09007 * 109.47213 * 184.99910 * 14 12 11 37 37 H 1.08998 * 109.47120 * 304.99384 * 14 12 11 38 38 H 0.97001 * 120.00530 * 179.97438 * 18 17 15 39 39 H 1.08001 * 119.99730 * 359.97438 * 24 23 12 40 40 H 1.08000 * 120.00376 * 179.97438 * 25 24 23 41 41 H 1.08000 * 120.00616 * 179.72578 * 26 25 24 42 42 H 1.08001 * 120.00299 * 179.97438 * 27 26 25 43 43 H 1.07997 * 120.00455 * 0.02562 * 28 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0438 1.2067 0.0000 4 7 1.3196 2.3132 0.0059 5 6 1.8769 3.5085 -0.0005 6 6 3.2524 3.6577 -0.0065 7 6 4.0586 2.5335 -0.0063 8 6 3.4449 1.2754 0.0005 9 6 4.2570 0.0438 0.0015 10 8 3.7126 -1.0434 0.0079 11 7 5.6024 0.1237 -0.0047 12 6 6.4088 -1.0993 -0.0042 13 1 5.9087 -1.8641 0.5899 14 6 7.7837 -0.8034 0.5984 15 6 7.6260 -0.4292 2.0497 16 1 6.6435 -0.4053 2.4975 17 6 8.7362 -0.1185 2.8060 18 7 9.9326 -0.1481 2.2608 19 14 8.5409 0.3447 4.6051 20 1 8.6202 -0.8790 5.4427 21 1 9.6240 1.2827 4.9952 22 1 7.2231 0.9986 4.8077 23 6 6.5758 -1.5916 -1.4187 24 6 6.5122 -2.9452 -1.6916 25 6 6.6649 -3.3966 -2.9892 26 6 6.8802 -2.4944 -4.0141 27 6 6.9424 -1.1406 -3.7414 28 6 6.7920 -0.6893 -2.4435 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.2483 4.3867 -0.0006 33 1 3.6931 4.6437 -0.0112 34 1 5.1348 2.6244 -0.0114 35 1 6.0367 0.9911 -0.0102 36 1 8.4140 -1.6891 0.5179 37 1 8.2469 0.0224 0.0585 38 1 10.7137 0.0708 2.7927 39 1 6.3433 -3.6501 -0.8909 40 1 6.6157 -4.4542 -3.2024 41 1 7.0039 -2.8473 -5.0273 42 1 7.1110 -0.4357 -4.5421 43 1 6.8416 0.3683 -2.2304 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153303657.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:25 Heat of formation + Delta-G solvation = -33.348459 kcal Electronic energy + Delta-G solvation = -27295.068782 eV Core-core repulsion = 23497.673870 eV Total energy + Delta-G solvation = -3797.394912 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.93872 -40.73655 -39.51109 -38.88974 -36.76960 -34.79071 -33.95101 -32.30355 -31.76127 -31.58662 -30.51628 -28.22369 -26.90373 -25.46290 -23.98443 -23.74327 -23.35971 -22.08225 -21.20087 -19.55773 -18.80692 -18.37566 -18.12895 -17.59307 -17.11700 -16.81729 -16.50438 -16.21298 -15.94425 -15.67314 -15.47144 -15.13791 -14.93373 -14.54602 -14.35159 -14.19636 -14.08852 -13.96156 -13.67744 -13.53285 -13.43449 -12.91865 -12.71211 -12.64891 -12.46295 -12.20418 -12.14800 -11.87956 -11.60067 -11.33050 -11.15394 -11.02100 -10.66661 -10.54484 -10.02012 -9.75627 -9.55021 -9.49710 -8.20222 -6.30272 -0.32041 0.23377 0.51170 0.56054 1.38601 1.40878 1.50629 1.94106 2.08821 2.25067 2.39747 2.82821 2.97266 3.13666 3.29442 3.76749 3.80779 3.97426 4.01225 4.03970 4.20679 4.26644 4.31899 4.38806 4.39251 4.41587 4.54774 4.65148 4.68973 4.76477 4.78616 4.90230 5.10368 5.12373 5.19891 5.26720 5.42199 5.42754 5.60166 5.60973 5.63938 5.77817 5.90556 6.16163 6.20587 6.22454 6.62906 6.76522 6.81819 7.32923 7.38683 8.90390 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.007660 B = 0.005200 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3654.666557 B = 5383.162492 C = 7768.553218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.304 6.304 3 C 0.348 3.652 4 N -0.556 5.556 5 C 0.164 3.836 6 C -0.204 4.204 7 C -0.009 4.009 8 C -0.233 4.233 9 C 0.557 3.443 10 O -0.568 6.568 11 N -0.691 5.691 12 C 0.202 3.798 13 H 0.056 0.944 14 C 0.039 3.961 15 C -0.530 4.530 16 H 0.050 0.950 17 C 0.015 3.985 18 N -0.923 5.923 19 Si 0.953 3.047 20 H -0.280 1.280 21 H -0.278 1.278 22 H -0.268 1.268 23 C -0.098 4.098 24 C -0.133 4.133 25 C -0.124 4.124 26 C -0.129 4.129 27 C -0.125 4.125 28 C -0.121 4.121 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.110 0.890 32 H 0.207 0.793 33 H 0.185 0.815 34 H 0.161 0.839 35 H 0.406 0.594 36 H 0.005 0.995 37 H 0.016 0.984 38 H 0.264 0.736 39 H 0.111 0.889 40 H 0.144 0.856 41 H 0.152 0.848 42 H 0.147 0.853 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.347 8.033 -10.409 18.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.209 6.209 3 C 0.169 3.831 4 N -0.281 5.281 5 C 0.008 3.992 6 C -0.223 4.223 7 C -0.035 4.035 8 C -0.239 4.239 9 C 0.344 3.656 10 O -0.449 6.449 11 N -0.341 5.341 12 C 0.097 3.903 13 H 0.074 0.926 14 C 0.002 3.998 15 C -0.568 4.568 16 H 0.068 0.932 17 C -0.184 4.184 18 N -0.563 5.563 19 Si 0.779 3.221 20 H -0.206 1.206 21 H -0.203 1.203 22 H -0.193 1.193 23 C -0.099 4.099 24 C -0.152 4.152 25 C -0.142 4.142 26 C -0.147 4.147 27 C -0.142 4.142 28 C -0.140 4.140 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.129 0.871 32 H 0.224 0.776 33 H 0.203 0.797 34 H 0.178 0.822 35 H 0.243 0.757 36 H 0.023 0.977 37 H 0.034 0.966 38 H 0.073 0.927 39 H 0.130 0.870 40 H 0.161 0.839 41 H 0.169 0.831 42 H 0.165 0.835 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -14.345 6.898 -10.343 18.982 hybrid contribution 1.128 0.293 1.337 1.774 sum -13.217 7.191 -9.006 17.535 Atomic orbital electron populations 1.23111 0.76074 1.04329 1.02649 1.86514 1.24121 1.24315 1.85998 1.20033 0.88372 0.85538 0.89123 1.67543 1.40362 0.99050 1.21164 1.23472 0.94144 0.93787 0.87835 1.22383 0.94332 1.00734 1.04893 1.22026 1.02098 0.89975 0.89388 1.20083 0.91678 0.95305 1.16836 1.18235 0.82379 0.88768 0.76183 1.90744 1.72407 1.30233 1.51486 1.45692 1.04896 1.09922 1.73593 1.19738 0.92810 0.86301 0.91486 0.92609 1.19128 0.89695 0.96199 0.94779 1.21365 0.92893 1.46376 0.96137 0.93171 1.25720 0.94895 0.95391 1.02401 1.70058 0.98666 1.49629 1.37975 0.85626 0.78014 0.78164 0.80302 1.20627 1.20282 1.19256 1.20448 0.99123 0.94586 0.95779 1.21173 1.01084 0.94972 0.97984 1.21381 0.99720 1.01005 0.92045 1.21472 1.00030 0.93103 1.00111 1.21445 0.99759 0.96779 0.96256 1.21073 1.00272 0.99516 0.93102 0.91875 0.91585 0.87142 0.77616 0.79729 0.82192 0.75715 0.97696 0.96586 0.92654 0.87048 0.83863 0.83055 0.83490 0.86040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.79 10.38 113.37 1.18 1.97 16 2 O -0.30 -10.67 8.58 -66.43 -0.57 -11.24 16 3 C 0.35 11.28 7.51 85.13 0.64 11.92 16 4 N -0.56 -14.18 9.21 -307.99 -2.84 -17.01 16 5 C 0.16 2.81 11.17 84.71 0.95 3.76 16 6 C -0.20 -3.31 10.09 22.32 0.23 -3.08 16 7 C -0.01 -0.21 9.64 22.72 0.22 0.01 16 8 C -0.23 -7.64 5.90 -19.91 -0.12 -7.75 16 9 C 0.56 22.52 7.73 86.69 0.67 23.19 16 10 O -0.57 -27.33 14.85 16.83 0.25 -27.08 16 11 N -0.69 -26.89 3.98 -449.29 -1.79 -28.68 16 12 C 0.20 8.91 2.12 44.25 0.09 9.00 16 13 H 0.06 2.78 7.44 -2.39 -0.02 2.76 16 14 C 0.04 1.99 4.49 29.85 0.13 2.13 16 15 C -0.53 -28.93 8.84 25.60 0.23 -28.70 16 16 H 0.05 2.77 7.74 -2.91 -0.02 2.75 16 17 C 0.01 0.82 5.46 84.66 0.46 1.28 16 18 N -0.92 -53.48 13.29 21.45 0.28 -53.19 16 19 Si 0.95 43.41 29.54 68.60 2.03 45.44 16 20 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 21 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 22 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 23 C -0.10 -3.89 4.91 -19.87 -0.10 -3.99 16 24 C -0.13 -4.96 9.67 22.27 0.22 -4.75 16 25 C -0.12 -3.69 10.05 22.27 0.22 -3.47 16 26 C -0.13 -3.42 10.05 22.27 0.22 -3.20 16 27 C -0.12 -3.51 10.05 22.27 0.22 -3.29 16 28 C -0.12 -4.16 9.32 22.27 0.21 -3.95 16 29 H 0.06 1.40 8.10 -2.39 -0.02 1.38 16 30 H 0.07 1.41 8.11 -2.39 -0.02 1.39 16 31 H 0.11 2.22 8.14 -2.38 -0.02 2.20 16 32 H 0.21 1.59 8.06 -2.91 -0.02 1.57 16 33 H 0.19 1.46 8.06 -2.91 -0.02 1.43 16 34 H 0.16 3.21 6.52 -2.91 -0.02 3.19 16 35 H 0.41 13.91 6.70 -92.70 -0.62 13.29 16 36 H 0.00 0.27 8.14 -2.38 -0.02 0.25 16 37 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 39 H 0.11 4.16 8.04 -2.91 -0.02 4.13 16 40 H 0.14 3.38 8.06 -2.91 -0.02 3.36 16 41 H 0.15 2.86 8.06 -2.91 -0.02 2.83 16 42 H 0.15 3.13 8.06 -2.91 -0.02 3.10 16 43 H 0.12 3.86 7.72 -2.91 -0.02 3.83 16 Total: -1.00 -76.82 371.52 3.45 -73.37 By element: Atomic # 1 Polarization: 26.92 SS G_CDS: 0.41 Total: 27.32 kcal Atomic # 6 Polarization: -14.60 SS G_CDS: 5.67 Total: -8.93 kcal Atomic # 7 Polarization: -94.55 SS G_CDS: -4.34 Total: -98.89 kcal Atomic # 8 Polarization: -38.00 SS G_CDS: -0.32 Total: -38.32 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Total: -76.82 3.45 -73.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153303657.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.020 kcal (2) G-P(sol) polarization free energy of solvation -76.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds