Wall clock time and date at job start Tue Mar 31 2020 14:42:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35747 * 116.99872 * 2 1 4 4 C 1.39217 * 120.81476 * 0.02562 * 3 2 1 5 5 C 1.38307 * 119.29114 * 180.02562 * 4 3 2 6 6 N 1.31621 * 120.96886 * 359.97438 * 5 4 3 7 7 C 1.32798 * 121.77957 * 0.02562 * 6 5 4 8 8 C 1.48188 * 119.69240 * 179.97438 * 7 6 5 9 9 O 1.21514 * 119.99696 * 179.97438 * 8 7 6 10 10 N 1.34770 * 120.00256 * 359.97438 * 8 7 6 11 11 C 1.46500 * 120.00240 * 180.02562 * 10 8 7 12 12 H 1.09003 * 109.46783 * 34.99218 * 11 10 8 13 13 C 1.53000 * 109.47369 * 154.99867 * 11 10 8 14 14 C 1.50700 * 109.46751 * 294.99698 * 13 11 10 15 15 H 1.08001 * 120.00624 * 0.02562 * 14 13 11 16 16 C 1.37882 * 119.99683 * 180.02562 * 14 13 11 17 17 N 1.31510 * 120.00069 * 180.02562 * 16 14 13 18 18 Si 1.86798 * 120.00106 * 0.02562 * 16 14 13 19 19 H 1.48494 * 109.47234 * 89.99665 * 18 16 14 20 20 H 1.48494 * 109.47362 * 210.00006 * 18 16 14 21 21 H 1.48504 * 109.47214 * 329.99823 * 18 16 14 22 22 C 1.50703 * 109.47065 * 275.00247 * 11 10 8 23 23 C 1.38235 * 120.00292 * 139.99706 * 22 11 10 24 24 C 1.38230 * 119.99899 * 179.97438 * 23 22 11 25 25 C 1.38235 * 120.00326 * 359.95697 * 24 23 22 26 26 C 1.38234 * 119.99814 * 359.97438 * 25 24 23 27 27 C 1.38234 * 119.99503 * 319.96999 * 22 11 10 28 28 C 1.39096 * 120.60741 * 0.25085 * 7 6 5 29 29 H 1.09002 * 109.47400 * 299.99540 * 1 2 3 30 30 H 1.08999 * 109.47484 * 60.00286 * 1 2 3 31 31 H 1.09010 * 109.46767 * 180.02562 * 1 2 3 32 32 H 1.08001 * 120.35459 * 0.04102 * 4 3 2 33 33 H 1.07994 * 119.51682 * 180.02562 * 5 4 3 34 34 H 0.96997 * 120.00034 * 359.97438 * 10 8 7 35 35 H 1.08995 * 109.46916 * 54.99829 * 13 11 10 36 36 H 1.09003 * 109.46852 * 175.00197 * 13 11 10 37 37 H 0.97001 * 120.00291 * 179.97438 * 17 16 14 38 38 H 1.08001 * 119.99730 * 359.97438 * 23 22 11 39 39 H 1.08000 * 120.00376 * 179.97438 * 24 23 22 40 40 H 1.08000 * 120.00616 * 179.72578 * 25 24 23 41 41 H 1.08001 * 120.00299 * 179.97438 * 26 25 24 42 42 H 1.07997 * 120.00455 * 0.02562 * 27 22 11 43 43 H 1.08000 * 120.51253 * 179.73066 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0452 1.2095 0.0000 4 6 1.3036 2.3878 0.0005 5 6 1.9640 3.6030 0.0000 6 7 3.2791 3.6591 -0.0005 7 6 4.0260 2.5611 -0.0011 8 6 5.5032 2.6783 -0.0022 9 8 6.1920 1.6772 -0.0022 10 7 6.0828 3.8950 -0.0032 11 6 7.5432 4.0108 -0.0049 12 1 7.9712 3.2000 -0.5945 13 6 7.9476 5.3541 -0.6155 14 6 7.5433 5.3883 -2.0668 15 1 7.0472 4.5372 -2.5094 16 6 7.8069 6.5062 -2.8297 17 7 7.4537 6.5362 -4.0962 18 14 8.6657 7.9780 -2.0645 19 1 10.1350 7.8301 -2.2207 20 1 8.2183 9.2204 -2.7435 21 1 8.3266 8.0534 -0.6206 22 6 8.0554 3.9274 1.4099 23 6 9.2102 3.2198 1.6865 24 6 9.6802 3.1438 2.9842 25 6 8.9959 3.7762 4.0053 26 6 7.8418 4.4850 3.7286 27 6 7.3705 4.5591 2.4311 28 6 3.4345 1.3022 -0.0063 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0278 0.0005 32 1 0.2242 2.3532 0.0016 33 1 1.3924 4.5192 0.0008 34 1 5.5329 4.6941 -0.0036 35 1 7.4482 6.1616 -0.0801 36 1 9.0276 5.4789 -0.5361 37 1 7.6388 7.3228 -4.6328 38 1 9.7452 2.7263 0.8885 39 1 10.5822 2.5906 3.2004 40 1 9.3606 3.7132 5.0199 41 1 7.3069 4.9788 4.5264 42 1 6.4683 5.1120 2.2151 43 1 4.0434 0.4103 -0.0111 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153494959.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:07 Heat of formation + Delta-G solvation = -11.170797 kcal Electronic energy + Delta-G solvation = -26798.666820 eV Core-core repulsion = 23002.233603 eV Total energy + Delta-G solvation = -3796.433217 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.86104 -39.61576 -38.69715 -37.84914 -35.30215 -32.67851 -31.87956 -31.66732 -30.76584 -30.45911 -29.25382 -27.91029 -25.42108 -23.82262 -23.44760 -22.29685 -21.73757 -20.72899 -19.75701 -18.59398 -17.37155 -17.11467 -16.45813 -16.15827 -16.13694 -15.73798 -15.53931 -15.00199 -14.76107 -14.49068 -14.29008 -14.13118 -13.91787 -13.44838 -13.33450 -13.05814 -12.80177 -12.63935 -12.56285 -12.36237 -11.86538 -11.77540 -11.56206 -11.31826 -11.07037 -10.70383 -10.62470 -10.16649 -9.96288 -9.81338 -9.47020 -9.32948 -9.28244 -9.06338 -8.60606 -8.56683 -8.46720 -8.27984 -6.06561 -4.06047 0.64529 1.20193 1.70064 1.73954 2.76969 3.00947 3.29338 3.37409 3.40088 3.61255 3.98407 4.14097 4.32592 4.42210 4.44490 4.66436 4.77875 4.79543 5.01299 5.10914 5.18088 5.21678 5.24878 5.28178 5.34526 5.47841 5.53030 5.68052 5.84829 5.86328 5.87021 6.05096 6.25673 6.30711 6.34298 6.45309 6.76282 6.79202 6.81355 6.93960 6.96660 7.07915 7.32643 7.34889 7.68644 7.74405 8.14608 8.48128 8.67785 8.99407 9.54097 11.06342 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.009365 B = 0.004131 C = 0.003158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2989.055817 B = 6776.058444 C = 8863.311075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.309 6.309 3 C 0.160 3.840 4 C -0.249 4.249 5 C 0.137 3.863 6 N -0.475 5.475 7 C 0.127 3.873 8 C 0.568 3.432 9 O -0.539 6.539 10 N -0.675 5.675 11 C 0.192 3.808 12 H 0.094 0.906 13 C -0.014 4.014 14 C -0.520 4.520 15 H 0.076 0.924 16 C 0.071 3.929 17 N -0.898 5.898 18 Si 0.875 3.125 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.264 1.264 22 C -0.078 4.078 23 C -0.106 4.106 24 C -0.123 4.123 25 C -0.133 4.133 26 C -0.125 4.125 27 C -0.108 4.108 28 C -0.147 4.147 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.103 0.897 32 H 0.141 0.859 33 H 0.165 0.835 34 H 0.413 0.587 35 H 0.025 0.975 36 H 0.031 0.969 37 H 0.263 0.737 38 H 0.123 0.877 39 H 0.117 0.883 40 H 0.114 0.886 41 H 0.115 0.885 42 H 0.119 0.881 43 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.715 -7.917 13.474 19.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.220 6.220 3 C 0.106 3.894 4 C -0.270 4.270 5 C -0.022 4.022 6 N -0.190 5.190 7 C -0.010 4.010 8 C 0.351 3.649 9 O -0.416 6.416 10 N -0.323 5.323 11 C 0.088 3.912 12 H 0.112 0.888 13 C -0.051 4.051 14 C -0.557 4.557 15 H 0.094 0.906 16 C -0.130 4.130 17 N -0.536 5.536 18 Si 0.702 3.298 19 H -0.202 1.202 20 H -0.214 1.214 21 H -0.189 1.189 22 C -0.079 4.079 23 C -0.125 4.125 24 C -0.141 4.141 25 C -0.151 4.151 26 C -0.143 4.143 27 C -0.126 4.126 28 C -0.168 4.168 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.122 0.878 32 H 0.159 0.841 33 H 0.182 0.818 34 H 0.250 0.750 35 H 0.043 0.957 36 H 0.049 0.951 37 H 0.073 0.927 38 H 0.141 0.859 39 H 0.135 0.865 40 H 0.132 0.868 41 H 0.133 0.867 42 H 0.137 0.863 43 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -10.686 -7.922 13.291 18.804 hybrid contribution -0.656 0.585 0.183 0.898 sum -11.342 -7.337 13.474 19.079 Atomic orbital electron populations 1.23147 0.77773 1.04389 1.01677 1.86090 1.21853 1.26121 1.87950 1.19188 0.92122 0.84732 0.93340 1.22368 1.01598 0.93269 1.09791 1.22601 0.89782 0.97117 0.92739 1.67677 1.07194 1.31258 1.12864 1.21139 0.94811 0.88431 0.96666 1.17725 0.85381 0.84350 0.77418 1.90755 1.63220 1.36685 1.50916 1.45746 1.07837 1.07850 1.70887 1.20056 0.78736 1.02034 0.90390 0.88754 1.19877 0.97254 0.90715 0.97267 1.21010 1.39304 1.02994 0.92430 0.90609 1.24970 0.95163 0.98272 0.94626 1.69906 1.47319 1.29692 1.06728 0.86858 0.80288 0.82593 0.80047 1.20244 1.21375 1.18899 1.20549 0.95091 0.95812 0.96423 1.21042 0.96235 0.98542 0.96669 1.21055 0.99872 1.00138 0.93037 1.21020 0.96260 0.99110 0.98724 1.21054 0.96832 0.99925 0.96503 1.20970 0.99886 0.99303 0.92460 1.21397 0.91862 0.99887 1.03704 0.92334 0.92225 0.87843 0.84096 0.81805 0.75030 0.95688 0.95093 0.92685 0.85926 0.86482 0.86770 0.86667 0.86343 0.82782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.84 101.05 0.99 1.15 16 2 O -0.31 -3.40 10.51 -18.95 -0.20 -3.60 16 3 C 0.16 1.98 6.73 -38.85 -0.26 1.72 16 4 C -0.25 -2.57 9.11 -39.19 -0.36 -2.93 16 5 C 0.14 1.60 11.17 -17.62 -0.20 1.40 16 6 N -0.48 -7.31 9.54 -9.87 -0.09 -7.40 16 7 C 0.13 2.13 6.75 -83.04 -0.56 1.57 16 8 C 0.57 11.05 7.77 -12.18 -0.09 10.96 16 9 O -0.54 -11.65 15.98 5.35 0.09 -11.57 16 10 N -0.67 -13.12 4.02 -55.77 -0.22 -13.34 16 11 C 0.19 3.92 2.11 -69.08 -0.15 3.77 16 12 H 0.09 2.09 7.44 -51.93 -0.39 1.70 16 13 C -0.01 -0.31 3.56 -27.88 -0.10 -0.41 16 14 C -0.52 -14.22 9.39 -34.44 -0.32 -14.54 16 15 H 0.08 2.29 7.99 -52.49 -0.42 1.87 16 16 C 0.07 2.02 5.47 -17.82 -0.10 1.93 16 17 N -0.90 -27.17 13.96 55.43 0.77 -26.40 16 18 Si 0.87 21.15 27.47 -169.99 -4.67 16.48 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 21 H -0.26 -6.11 6.54 56.52 0.37 -5.74 16 22 C -0.08 -1.41 4.91 -104.62 -0.51 -1.92 16 23 C -0.11 -1.78 9.67 -39.59 -0.38 -2.17 16 24 C -0.12 -1.78 10.05 -39.59 -0.40 -2.17 16 25 C -0.13 -1.82 10.05 -39.58 -0.40 -2.22 16 26 C -0.13 -1.81 10.05 -39.58 -0.40 -2.20 16 27 C -0.11 -1.79 9.32 -39.58 -0.37 -2.16 16 28 C -0.15 -2.21 9.60 -38.89 -0.37 -2.58 16 29 H 0.06 0.29 7.71 -51.93 -0.40 -0.11 16 30 H 0.06 0.31 7.71 -51.93 -0.40 -0.09 16 31 H 0.10 0.44 8.14 -51.92 -0.42 0.02 16 32 H 0.14 0.96 6.45 -52.49 -0.34 0.62 16 33 H 0.16 1.37 8.06 -52.49 -0.42 0.94 16 34 H 0.41 7.78 7.93 -40.82 -0.32 7.46 16 35 H 0.02 0.56 7.20 -51.93 -0.37 0.19 16 36 H 0.03 0.71 7.57 -51.93 -0.39 0.32 16 37 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 38 H 0.12 1.95 8.04 -52.49 -0.42 1.53 16 39 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 40 H 0.11 1.24 8.06 -52.49 -0.42 0.82 16 41 H 0.12 1.37 8.06 -52.49 -0.42 0.94 16 42 H 0.12 1.87 7.72 -52.49 -0.41 1.47 16 43 H 0.15 2.34 7.64 -52.49 -0.40 1.94 16 LS Contribution 369.85 15.07 5.57 5.57 Total: -1.00 -33.57 369.85 -8.27 -41.84 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: -5.54 Total: 9.21 kcal Atomic # 6 Polarization: -6.83 SS G_CDS: -3.97 Total: -10.80 kcal Atomic # 7 Polarization: -47.59 SS G_CDS: 0.46 Total: -47.14 kcal Atomic # 8 Polarization: -15.05 SS G_CDS: -0.11 Total: -15.16 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.67 Total: 16.48 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.57 -8.27 -41.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153494959.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.672 kcal (2) G-P(sol) polarization free energy of solvation -33.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds