Wall clock time and date at job start Tue Mar 31 2020 14:42:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35747 * 116.99872 * 2 1 4 4 C 1.39217 * 120.81476 * 0.02562 * 3 2 1 5 5 C 1.38307 * 119.29114 * 180.02562 * 4 3 2 6 6 N 1.31621 * 120.96886 * 359.97438 * 5 4 3 7 7 C 1.32798 * 121.77957 * 0.02562 * 6 5 4 8 8 C 1.48188 * 119.69240 * 179.97438 * 7 6 5 9 9 O 1.21514 * 119.99696 * 179.97438 * 8 7 6 10 10 N 1.34770 * 120.00256 * 359.97438 * 8 7 6 11 11 C 1.46500 * 120.00240 * 180.02562 * 10 8 7 12 12 H 1.09003 * 109.46783 * 34.99218 * 11 10 8 13 13 C 1.53000 * 109.47369 * 154.99867 * 11 10 8 14 14 C 1.50700 * 109.46751 * 294.99698 * 13 11 10 15 15 H 1.08001 * 120.00624 * 0.02562 * 14 13 11 16 16 C 1.37882 * 119.99683 * 180.02562 * 14 13 11 17 17 N 1.31510 * 120.00069 * 180.02562 * 16 14 13 18 18 Si 1.86798 * 120.00106 * 0.02562 * 16 14 13 19 19 H 1.48494 * 109.47234 * 89.99665 * 18 16 14 20 20 H 1.48494 * 109.47362 * 210.00006 * 18 16 14 21 21 H 1.48504 * 109.47214 * 329.99823 * 18 16 14 22 22 C 1.50703 * 109.47065 * 275.00247 * 11 10 8 23 23 C 1.38235 * 120.00292 * 139.99706 * 22 11 10 24 24 C 1.38230 * 119.99899 * 179.97438 * 23 22 11 25 25 C 1.38235 * 120.00326 * 359.95697 * 24 23 22 26 26 C 1.38234 * 119.99814 * 359.97438 * 25 24 23 27 27 C 1.38234 * 119.99503 * 319.96999 * 22 11 10 28 28 C 1.39096 * 120.60741 * 0.25085 * 7 6 5 29 29 H 1.09002 * 109.47400 * 299.99540 * 1 2 3 30 30 H 1.08999 * 109.47484 * 60.00286 * 1 2 3 31 31 H 1.09010 * 109.46767 * 180.02562 * 1 2 3 32 32 H 1.08001 * 120.35459 * 0.04102 * 4 3 2 33 33 H 1.07994 * 119.51682 * 180.02562 * 5 4 3 34 34 H 0.96997 * 120.00034 * 359.97438 * 10 8 7 35 35 H 1.08995 * 109.46916 * 54.99829 * 13 11 10 36 36 H 1.09003 * 109.46852 * 175.00197 * 13 11 10 37 37 H 0.97001 * 120.00291 * 179.97438 * 17 16 14 38 38 H 1.08001 * 119.99730 * 359.97438 * 23 22 11 39 39 H 1.08000 * 120.00376 * 179.97438 * 24 23 22 40 40 H 1.08000 * 120.00616 * 179.72578 * 25 24 23 41 41 H 1.08001 * 120.00299 * 179.97438 * 26 25 24 42 42 H 1.07997 * 120.00455 * 0.02562 * 27 22 11 43 43 H 1.08000 * 120.51253 * 179.73066 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0452 1.2095 0.0000 4 6 1.3036 2.3878 0.0005 5 6 1.9640 3.6030 0.0000 6 7 3.2791 3.6591 -0.0005 7 6 4.0260 2.5611 -0.0011 8 6 5.5032 2.6783 -0.0022 9 8 6.1920 1.6772 -0.0022 10 7 6.0828 3.8950 -0.0032 11 6 7.5432 4.0108 -0.0049 12 1 7.9712 3.2000 -0.5945 13 6 7.9476 5.3541 -0.6155 14 6 7.5433 5.3883 -2.0668 15 1 7.0472 4.5372 -2.5094 16 6 7.8069 6.5062 -2.8297 17 7 7.4537 6.5362 -4.0962 18 14 8.6657 7.9780 -2.0645 19 1 10.1350 7.8301 -2.2207 20 1 8.2183 9.2204 -2.7435 21 1 8.3266 8.0534 -0.6206 22 6 8.0554 3.9274 1.4099 23 6 9.2102 3.2198 1.6865 24 6 9.6802 3.1438 2.9842 25 6 8.9959 3.7762 4.0053 26 6 7.8418 4.4850 3.7286 27 6 7.3705 4.5591 2.4311 28 6 3.4345 1.3022 -0.0063 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0278 0.0005 32 1 0.2242 2.3532 0.0016 33 1 1.3924 4.5192 0.0008 34 1 5.5329 4.6941 -0.0036 35 1 7.4482 6.1616 -0.0801 36 1 9.0276 5.4789 -0.5361 37 1 7.6388 7.3228 -4.6328 38 1 9.7452 2.7263 0.8885 39 1 10.5822 2.5906 3.2004 40 1 9.3606 3.7132 5.0199 41 1 7.3069 4.9788 4.5264 42 1 6.4683 5.1120 2.2151 43 1 4.0434 0.4103 -0.0111 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153494959.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:06 Heat of formation + Delta-G solvation = -33.373839 kcal Electronic energy + Delta-G solvation = -26799.629616 eV Core-core repulsion = 23002.233603 eV Total energy + Delta-G solvation = -3797.396013 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.93995 -40.91887 -39.83611 -38.97469 -36.90914 -34.72079 -33.19206 -32.70964 -31.95962 -31.65916 -30.97741 -28.55637 -27.03229 -25.10018 -24.43577 -23.61286 -23.26535 -22.04463 -21.24387 -19.74872 -19.05574 -18.42706 -17.82959 -17.25185 -17.05705 -16.89748 -16.71716 -16.37615 -16.22752 -15.75979 -15.74627 -15.33867 -14.99706 -14.78551 -14.61120 -14.50011 -14.20648 -14.12005 -13.83266 -13.57857 -13.38313 -13.05370 -12.56183 -12.54027 -12.42661 -12.31697 -11.94167 -11.76331 -11.73563 -11.44108 -11.36425 -10.77744 -10.67428 -10.41481 -10.04812 -9.99075 -9.76582 -9.56025 -8.27174 -6.32218 -0.46643 0.20555 0.48029 0.55058 1.38342 1.38972 1.50893 1.68950 1.86732 2.35320 2.36815 2.80001 2.93494 3.07157 3.17687 3.57717 3.79034 3.89463 3.96019 4.01808 4.15370 4.20075 4.31832 4.33502 4.37434 4.38993 4.47671 4.55977 4.69211 4.72048 4.75088 4.75894 4.90318 5.00070 5.12896 5.17827 5.23409 5.34731 5.49095 5.55543 5.63695 5.64762 5.83601 6.13759 6.16918 6.25676 6.46801 6.73815 6.82586 7.16324 7.31468 8.89503 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.009365 B = 0.004131 C = 0.003158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2989.055817 B = 6776.058444 C = 8863.311075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.326 6.326 3 C 0.161 3.839 4 C -0.224 4.224 5 C 0.133 3.867 6 N -0.500 5.500 7 C 0.102 3.898 8 C 0.562 3.438 9 O -0.574 6.574 10 N -0.674 5.674 11 C 0.201 3.799 12 H 0.061 0.939 13 C -0.003 4.003 14 C -0.521 4.521 15 H 0.028 0.972 16 C 0.012 3.988 17 N -0.948 5.948 18 Si 0.947 3.053 19 H -0.270 1.270 20 H -0.284 1.284 21 H -0.243 1.243 22 C -0.101 4.101 23 C -0.128 4.128 24 C -0.122 4.122 25 C -0.125 4.125 26 C -0.124 4.124 27 C -0.121 4.121 28 C -0.163 4.163 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.122 0.878 32 H 0.187 0.813 33 H 0.203 0.797 34 H 0.414 0.586 35 H 0.036 0.964 36 H 0.034 0.966 37 H 0.266 0.734 38 H 0.116 0.884 39 H 0.146 0.854 40 H 0.152 0.848 41 H 0.146 0.854 42 H 0.119 0.881 43 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.303 -6.778 16.673 22.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.237 6.237 3 C 0.107 3.893 4 C -0.245 4.245 5 C -0.026 4.026 6 N -0.215 5.215 7 C -0.035 4.035 8 C 0.347 3.653 9 O -0.454 6.454 10 N -0.322 5.322 11 C 0.096 3.904 12 H 0.079 0.921 13 C -0.041 4.041 14 C -0.559 4.559 15 H 0.046 0.954 16 C -0.185 4.185 17 N -0.588 5.588 18 Si 0.770 3.230 19 H -0.195 1.195 20 H -0.209 1.209 21 H -0.166 1.166 22 C -0.102 4.102 23 C -0.147 4.147 24 C -0.140 4.140 25 C -0.143 4.143 26 C -0.141 4.141 27 C -0.139 4.139 28 C -0.185 4.185 29 H 0.096 0.904 30 H 0.092 0.908 31 H 0.141 0.859 32 H 0.205 0.795 33 H 0.219 0.781 34 H 0.251 0.749 35 H 0.054 0.946 36 H 0.053 0.947 37 H 0.075 0.925 38 H 0.134 0.866 39 H 0.164 0.836 40 H 0.170 0.830 41 H 0.164 0.836 42 H 0.137 0.863 43 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -12.293 -6.795 16.507 21.674 hybrid contribution -0.336 0.078 -0.823 0.892 sum -12.629 -6.717 15.684 21.228 Atomic orbital electron populations 1.23561 0.74990 1.06379 1.03246 1.86087 1.24668 1.25438 1.87545 1.19191 0.91213 0.86243 0.92691 1.22795 1.03622 0.91568 1.06466 1.23313 0.88598 0.99318 0.91341 1.67613 1.09133 1.30808 1.13952 1.20664 0.93193 0.89712 0.99893 1.18239 0.86974 0.83673 0.76389 1.90705 1.64545 1.37542 1.52579 1.45697 1.07457 1.08106 1.70906 1.19711 0.79384 0.99306 0.92011 0.92088 1.19724 0.97313 0.92586 0.94451 1.21180 1.38486 1.01450 0.94818 0.95361 1.25905 0.95974 1.01695 0.94949 1.70067 1.49232 1.30939 1.08578 0.85714 0.79021 0.78125 0.80131 1.19523 1.20940 1.16602 1.20340 0.96459 0.98302 0.95143 1.21191 0.96256 0.99121 0.98134 1.21400 1.00741 0.99864 0.91956 1.21494 0.95339 0.97269 1.00214 1.21429 0.97109 0.99507 0.96086 1.21085 1.00001 0.99593 0.93253 1.21332 0.93620 0.98700 1.04847 0.90407 0.90805 0.85935 0.79545 0.78053 0.74866 0.94602 0.94734 0.92500 0.86550 0.83641 0.82998 0.83594 0.86325 0.84340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 9.84 113.37 1.12 1.22 16 2 O -0.33 -6.68 10.51 -90.72 -0.95 -7.64 16 3 C 0.16 3.84 6.73 22.75 0.15 3.99 16 4 C -0.22 -3.96 9.11 22.52 0.21 -3.75 16 5 C 0.13 2.84 11.17 84.74 0.95 3.78 16 6 N -0.50 -15.55 9.54 -185.14 -1.77 -17.31 16 7 C 0.10 3.62 6.75 41.85 0.28 3.90 16 8 C 0.56 23.79 7.77 86.89 0.68 24.46 16 9 O -0.57 -27.26 15.98 -3.76 -0.06 -27.32 16 10 N -0.67 -28.17 4.02 -448.65 -1.80 -29.98 16 11 C 0.20 8.75 2.11 44.25 0.09 8.85 16 12 H 0.06 3.00 7.44 -2.39 -0.02 2.99 16 13 C 0.00 -0.15 3.56 29.85 0.11 -0.04 16 14 C -0.52 -30.09 9.39 25.60 0.24 -29.85 16 15 H 0.03 1.85 7.99 -2.91 -0.02 1.83 16 16 C 0.01 0.70 5.47 84.66 0.46 1.16 16 17 N -0.95 -59.60 13.96 21.45 0.30 -59.30 16 18 Si 0.95 43.91 27.47 68.60 1.88 45.79 16 19 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 20 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 21 H -0.24 -10.33 6.54 99.48 0.65 -9.68 16 22 C -0.10 -3.79 4.91 -19.87 -0.10 -3.89 16 23 C -0.13 -4.38 9.67 22.27 0.22 -4.17 16 24 C -0.12 -3.28 10.05 22.27 0.22 -3.06 16 25 C -0.13 -3.00 10.05 22.27 0.22 -2.78 16 26 C -0.12 -3.23 10.05 22.27 0.22 -3.01 16 27 C -0.12 -3.95 9.32 22.27 0.21 -3.74 16 28 C -0.16 -5.16 9.60 22.72 0.22 -4.94 16 29 H 0.08 0.44 7.71 -2.39 -0.02 0.42 16 30 H 0.07 0.49 7.71 -2.39 -0.02 0.47 16 31 H 0.12 0.66 8.14 -2.38 -0.02 0.64 16 32 H 0.19 1.53 6.45 -2.91 -0.02 1.52 16 33 H 0.20 2.62 8.06 -2.91 -0.02 2.60 16 34 H 0.41 16.64 7.93 -92.71 -0.74 15.91 16 35 H 0.04 1.62 7.20 -2.39 -0.02 1.60 16 36 H 0.03 1.61 7.57 -2.39 -0.02 1.59 16 37 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 38 H 0.12 3.95 8.04 -2.91 -0.02 3.92 16 39 H 0.15 3.01 8.06 -2.91 -0.02 2.99 16 40 H 0.15 2.51 8.06 -2.91 -0.02 2.49 16 41 H 0.15 2.88 8.06 -2.91 -0.02 2.86 16 42 H 0.12 3.75 7.72 -2.91 -0.02 3.72 16 43 H 0.14 4.66 7.64 -2.91 -0.02 4.64 16 Total: -1.00 -79.31 369.85 3.34 -75.96 By element: Atomic # 1 Polarization: 31.40 SS G_CDS: 0.25 Total: 31.64 kcal Atomic # 6 Polarization: -17.35 SS G_CDS: 5.50 Total: -11.86 kcal Atomic # 7 Polarization: -103.32 SS G_CDS: -3.27 Total: -106.59 kcal Atomic # 8 Polarization: -33.94 SS G_CDS: -1.01 Total: -34.95 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 1.88 Total: 45.79 kcal Total: -79.31 3.34 -75.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153494959.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.591 kcal (2) G-P(sol) polarization free energy of solvation -79.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds