Wall clock time and date at job start Tue Mar 31 2020 14:42:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35740 * 117.00145 * 2 1 4 4 C 1.39219 * 120.81442 * 359.97438 * 3 2 1 5 5 C 1.38316 * 119.28726 * 179.97438 * 4 3 2 6 6 N 1.31614 * 120.97063 * 359.97438 * 5 4 3 7 7 C 1.32795 * 121.78453 * 0.02562 * 6 5 4 8 8 C 1.48182 * 119.69970 * 180.02562 * 7 6 5 9 9 O 1.21513 * 120.00037 * 180.02562 * 8 7 6 10 10 N 1.34777 * 119.99648 * 359.97438 * 8 7 6 11 11 C 1.46499 * 119.99665 * 179.72355 * 10 8 7 12 12 H 1.08999 * 109.47228 * 325.27715 * 11 10 8 13 13 C 1.53001 * 109.47193 * 205.27836 * 11 10 8 14 14 C 1.50704 * 109.47083 * 64.99991 * 13 11 10 15 15 H 1.07998 * 119.99848 * 0.02562 * 14 13 11 16 16 C 1.37880 * 119.99715 * 179.97438 * 14 13 11 17 17 N 1.31510 * 120.00459 * 0.02562 * 16 14 13 18 18 Si 1.86808 * 119.99575 * 179.97438 * 16 14 13 19 19 H 1.48495 * 109.47086 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.46787 * 120.00263 * 18 16 14 21 21 H 1.48495 * 109.47010 * 239.99901 * 18 16 14 22 22 C 1.50698 * 109.47509 * 85.27815 * 11 10 8 23 23 C 1.38240 * 119.99595 * 39.72189 * 22 11 10 24 24 C 1.38237 * 119.99776 * 179.81296 * 23 22 11 25 25 C 1.38228 * 120.00003 * 0.39861 * 24 23 22 26 26 C 1.38233 * 120.00208 * 359.85654 * 25 24 23 27 27 C 1.38229 * 120.00591 * 220.00156 * 22 11 10 28 28 C 1.39107 * 120.60129 * 0.27935 * 7 6 5 29 29 H 1.08998 * 109.46797 * 299.99916 * 1 2 3 30 30 H 1.08995 * 109.46786 * 59.99989 * 1 2 3 31 31 H 1.08996 * 109.47254 * 179.97438 * 1 2 3 32 32 H 1.07995 * 120.35490 * 0.02562 * 4 3 2 33 33 H 1.07996 * 119.51043 * 179.97438 * 5 4 3 34 34 H 0.97001 * 120.00485 * 0.02562 * 10 8 7 35 35 H 1.08996 * 109.47384 * 185.00021 * 13 11 10 36 36 H 1.08994 * 109.47052 * 305.00248 * 13 11 10 37 37 H 0.96991 * 120.00352 * 180.02562 * 17 16 14 38 38 H 1.08002 * 120.00034 * 0.02562 * 23 22 11 39 39 H 1.08004 * 119.99803 * 180.23669 * 24 23 22 40 40 H 1.07998 * 120.00024 * 179.83262 * 25 24 23 41 41 H 1.08004 * 120.00112 * 179.97438 * 26 25 24 42 42 H 1.08007 * 119.99611 * 359.97438 * 27 22 11 43 43 H 1.08001 * 120.50606 * 179.72413 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2094 0.0000 4 6 1.3038 2.3877 -0.0005 5 6 1.9644 3.6029 0.0000 6 7 3.2793 3.6590 0.0015 7 6 4.0262 2.5610 0.0021 8 6 5.5034 2.6780 0.0044 9 8 6.1922 1.6769 0.0045 10 7 6.0830 3.8948 0.0054 11 6 7.5434 4.0104 0.0138 12 1 7.9688 3.1982 0.6033 13 6 7.9453 5.3522 0.6295 14 6 7.5345 5.3828 2.0792 15 1 7.0371 4.5303 2.5176 16 6 7.7949 6.4988 2.8460 17 7 8.4011 7.5366 2.3122 18 14 7.2851 6.5370 4.6427 19 1 6.6249 5.2550 4.9973 20 1 8.4869 6.7264 5.4942 21 1 6.3390 7.6597 4.8651 22 6 8.0619 3.9306 -1.3989 23 6 7.3782 4.5597 -2.4226 24 6 7.8558 4.4898 -3.7179 25 6 9.0125 3.7840 -3.9909 26 6 9.6933 3.1505 -2.9681 27 6 9.2178 3.2237 -1.6722 28 6 3.4346 1.3021 -0.0047 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 0.2244 2.3532 -0.0005 33 1 1.3927 4.5192 -0.0008 34 1 5.5333 4.6939 0.0050 35 1 9.0255 5.4771 0.5552 36 1 7.4483 6.1610 0.0940 37 1 8.5845 8.3215 2.8517 38 1 6.4727 5.1087 -2.2097 39 1 7.3237 4.9845 -4.5171 40 1 9.3842 3.7271 -5.0033 41 1 10.5969 2.5987 -3.1814 42 1 9.7497 2.7287 -0.8730 43 1 4.0435 0.4101 -0.0088 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153495077.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:10 Heat of formation + Delta-G solvation = -15.323770 kcal Electronic energy + Delta-G solvation = -26765.856366 eV Core-core repulsion = 22969.243063 eV Total energy + Delta-G solvation = -3796.613303 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.87579 -39.55685 -38.65151 -37.83317 -35.20524 -32.74362 -31.84875 -31.68285 -30.68710 -30.36088 -28.74245 -27.92183 -25.25278 -23.86097 -23.46593 -22.25005 -21.90827 -20.75297 -19.70994 -18.59950 -17.38334 -16.89092 -16.18642 -16.15448 -16.11433 -15.72220 -15.50713 -14.93859 -14.73466 -14.49149 -14.44791 -14.09059 -13.93202 -13.39001 -13.32033 -12.95996 -12.69782 -12.58977 -12.45693 -12.07268 -11.88363 -11.58929 -11.52520 -11.09500 -10.90188 -10.70326 -10.55495 -10.45093 -9.97058 -9.74608 -9.46346 -9.34863 -9.22597 -9.08637 -8.50612 -8.41825 -8.38485 -8.14858 -6.04473 -4.07244 0.62746 1.17958 1.81616 1.84832 2.75198 3.00753 3.30021 3.38097 3.43386 3.63958 3.97524 4.21893 4.34152 4.43001 4.45084 4.64479 4.75843 4.77233 4.99221 5.08785 5.25065 5.30907 5.32083 5.34050 5.42351 5.51034 5.59212 5.66262 5.84816 5.95528 5.98026 6.17813 6.30193 6.39519 6.47935 6.61115 6.88978 6.89381 6.91032 6.92429 7.15079 7.44557 7.54127 7.62518 7.75694 7.92415 8.18507 8.30510 8.70857 8.98385 9.57554 11.06215 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.007963 B = 0.004468 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3515.519237 B = 6265.756237 C = 8917.489070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.309 6.309 3 C 0.159 3.841 4 C -0.250 4.250 5 C 0.137 3.863 6 N -0.475 5.475 7 C 0.127 3.873 8 C 0.565 3.435 9 O -0.540 6.540 10 N -0.674 5.674 11 C 0.181 3.819 12 H 0.089 0.911 13 C 0.024 3.976 14 C -0.518 4.518 15 H 0.058 0.942 16 C 0.061 3.939 17 N -0.892 5.892 18 Si 0.891 3.109 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 C -0.072 4.072 23 C -0.107 4.107 24 C -0.125 4.125 25 C -0.135 4.135 26 C -0.123 4.123 27 C -0.107 4.107 28 C -0.147 4.147 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.103 0.897 32 H 0.141 0.859 33 H 0.165 0.835 34 H 0.413 0.587 35 H 0.036 0.964 36 H 0.026 0.974 37 H 0.261 0.739 38 H 0.118 0.882 39 H 0.114 0.886 40 H 0.113 0.887 41 H 0.116 0.884 42 H 0.121 0.879 43 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.724 -9.906 -9.323 19.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.220 6.220 3 C 0.106 3.894 4 C -0.271 4.271 5 C -0.023 4.023 6 N -0.190 5.190 7 C -0.011 4.011 8 C 0.348 3.652 9 O -0.418 6.418 10 N -0.322 5.322 11 C 0.078 3.922 12 H 0.107 0.893 13 C -0.014 4.014 14 C -0.556 4.556 15 H 0.077 0.923 16 C -0.141 4.141 17 N -0.531 5.531 18 Si 0.719 3.281 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.073 4.073 23 C -0.125 4.125 24 C -0.143 4.143 25 C -0.153 4.153 26 C -0.141 4.141 27 C -0.126 4.126 28 C -0.169 4.169 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.122 0.878 32 H 0.159 0.841 33 H 0.182 0.818 34 H 0.250 0.750 35 H 0.054 0.946 36 H 0.044 0.956 37 H 0.070 0.930 38 H 0.136 0.864 39 H 0.133 0.867 40 H 0.131 0.869 41 H 0.134 0.866 42 H 0.139 0.861 43 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -12.628 -9.847 -9.266 18.501 hybrid contribution -1.337 -0.108 1.036 1.695 sum -13.965 -9.955 -8.230 19.022 Atomic orbital electron populations 1.23145 0.77768 1.04392 1.01674 1.86090 1.21855 1.26135 1.87948 1.19193 0.92130 0.84728 0.93338 1.22371 1.01592 0.93275 1.09858 1.22609 0.89798 0.97111 0.92749 1.67684 1.07171 1.31277 1.12892 1.21193 0.94927 0.88395 0.96552 1.17756 0.85312 0.84492 0.77639 1.90752 1.63202 1.36707 1.51094 1.45848 1.08159 1.07683 1.70522 1.20353 0.78236 1.03086 0.90572 0.89279 1.19403 0.97913 0.88514 0.95523 1.21171 1.38490 1.01109 0.94854 0.92348 1.24966 0.95084 0.95608 0.98396 1.69962 1.41697 1.05206 1.36239 0.86550 0.78298 0.78004 0.85271 1.19764 1.21025 1.21025 1.20518 0.94965 0.95449 0.96377 1.20950 0.99913 0.99224 0.92419 1.21039 0.96828 0.99900 0.96547 1.20993 0.96319 0.99305 0.98660 1.21034 0.99795 1.00240 0.93075 1.21016 0.96297 0.98683 0.96589 1.21407 0.91842 0.99914 1.03761 0.92259 0.92307 0.87840 0.84110 0.81804 0.75045 0.94579 0.95552 0.92963 0.86419 0.86745 0.86862 0.86596 0.86103 0.82790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.84 101.05 0.99 1.15 16 2 O -0.31 -3.34 10.51 -18.93 -0.20 -3.54 16 3 C 0.16 1.95 6.73 -38.85 -0.26 1.69 16 4 C -0.25 -2.52 9.12 -39.19 -0.36 -2.88 16 5 C 0.14 1.56 11.17 -17.62 -0.20 1.37 16 6 N -0.48 -7.21 9.54 -9.87 -0.09 -7.31 16 7 C 0.13 2.10 6.75 -83.04 -0.56 1.54 16 8 C 0.56 10.96 7.77 -12.17 -0.09 10.87 16 9 O -0.54 -11.68 15.98 5.35 0.09 -11.59 16 10 N -0.67 -13.23 4.01 -55.77 -0.22 -13.46 16 11 C 0.18 3.82 2.12 -69.08 -0.15 3.68 16 12 H 0.09 2.01 7.43 -51.93 -0.39 1.62 16 13 C 0.02 0.58 4.50 -27.88 -0.13 0.46 16 14 C -0.52 -14.02 8.84 -34.44 -0.30 -14.32 16 15 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 16 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 17 N -0.89 -25.89 13.29 55.43 0.74 -25.16 16 18 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 19 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 20 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 22 C -0.07 -1.38 4.92 -104.63 -0.51 -1.89 16 23 C -0.11 -1.88 9.33 -39.58 -0.37 -2.25 16 24 C -0.13 -1.92 10.05 -39.59 -0.40 -2.32 16 25 C -0.13 -1.96 10.05 -39.59 -0.40 -2.36 16 26 C -0.12 -1.89 10.05 -39.58 -0.40 -2.29 16 27 C -0.11 -1.90 9.67 -39.59 -0.38 -2.29 16 28 C -0.15 -2.19 9.60 -38.89 -0.37 -2.56 16 29 H 0.06 0.30 7.71 -51.93 -0.40 -0.10 16 30 H 0.06 0.28 7.71 -51.93 -0.40 -0.12 16 31 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.14 0.93 6.45 -52.49 -0.34 0.59 16 33 H 0.16 1.33 8.06 -52.49 -0.42 0.91 16 34 H 0.41 7.90 7.93 -40.82 -0.32 7.58 16 35 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 38 H 0.12 1.99 7.71 -52.49 -0.40 1.59 16 39 H 0.11 1.46 8.06 -52.48 -0.42 1.04 16 40 H 0.11 1.33 8.06 -52.49 -0.42 0.90 16 41 H 0.12 1.46 8.06 -52.48 -0.42 1.04 16 42 H 0.12 2.03 8.04 -52.48 -0.42 1.61 16 43 H 0.15 2.31 7.64 -52.49 -0.40 1.91 16 LS Contribution 373.44 15.07 5.63 5.63 Total: -1.00 -32.70 373.44 -8.65 -41.35 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: -5.58 Total: 8.45 kcal Atomic # 6 Polarization: -6.83 SS G_CDS: -3.98 Total: -10.81 kcal Atomic # 7 Polarization: -46.34 SS G_CDS: 0.42 Total: -45.92 kcal Atomic # 8 Polarization: -15.02 SS G_CDS: -0.11 Total: -15.13 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.70 -8.65 -41.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153495077.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.026 kcal (2) G-P(sol) polarization free energy of solvation -32.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds