Wall clock time and date at job start Tue Mar 31 2020 14:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35740 * 117.00145 * 2 1 4 4 C 1.39219 * 120.81442 * 359.97438 * 3 2 1 5 5 C 1.38316 * 119.28726 * 179.97438 * 4 3 2 6 6 N 1.31614 * 120.97063 * 359.97438 * 5 4 3 7 7 C 1.32795 * 121.78453 * 0.02562 * 6 5 4 8 8 C 1.48182 * 119.69970 * 180.02562 * 7 6 5 9 9 O 1.21513 * 120.00037 * 180.02562 * 8 7 6 10 10 N 1.34777 * 119.99648 * 359.97438 * 8 7 6 11 11 C 1.46499 * 119.99665 * 179.72355 * 10 8 7 12 12 H 1.08999 * 109.47228 * 325.27715 * 11 10 8 13 13 C 1.53001 * 109.47193 * 205.27836 * 11 10 8 14 14 C 1.50704 * 109.47083 * 64.99991 * 13 11 10 15 15 H 1.07998 * 119.99848 * 0.02562 * 14 13 11 16 16 C 1.37880 * 119.99715 * 179.97438 * 14 13 11 17 17 N 1.31510 * 120.00459 * 0.02562 * 16 14 13 18 18 Si 1.86808 * 119.99575 * 179.97438 * 16 14 13 19 19 H 1.48495 * 109.47086 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.46787 * 120.00263 * 18 16 14 21 21 H 1.48495 * 109.47010 * 239.99901 * 18 16 14 22 22 C 1.50698 * 109.47509 * 85.27815 * 11 10 8 23 23 C 1.38240 * 119.99595 * 39.72189 * 22 11 10 24 24 C 1.38237 * 119.99776 * 179.81296 * 23 22 11 25 25 C 1.38228 * 120.00003 * 0.39861 * 24 23 22 26 26 C 1.38233 * 120.00208 * 359.85654 * 25 24 23 27 27 C 1.38229 * 120.00591 * 220.00156 * 22 11 10 28 28 C 1.39107 * 120.60129 * 0.27935 * 7 6 5 29 29 H 1.08998 * 109.46797 * 299.99916 * 1 2 3 30 30 H 1.08995 * 109.46786 * 59.99989 * 1 2 3 31 31 H 1.08996 * 109.47254 * 179.97438 * 1 2 3 32 32 H 1.07995 * 120.35490 * 0.02562 * 4 3 2 33 33 H 1.07996 * 119.51043 * 179.97438 * 5 4 3 34 34 H 0.97001 * 120.00485 * 0.02562 * 10 8 7 35 35 H 1.08996 * 109.47384 * 185.00021 * 13 11 10 36 36 H 1.08994 * 109.47052 * 305.00248 * 13 11 10 37 37 H 0.96991 * 120.00352 * 180.02562 * 17 16 14 38 38 H 1.08002 * 120.00034 * 0.02562 * 23 22 11 39 39 H 1.08004 * 119.99803 * 180.23669 * 24 23 22 40 40 H 1.07998 * 120.00024 * 179.83262 * 25 24 23 41 41 H 1.08004 * 120.00112 * 179.97438 * 26 25 24 42 42 H 1.08007 * 119.99611 * 359.97438 * 27 22 11 43 43 H 1.08001 * 120.50606 * 179.72413 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2094 0.0000 4 6 1.3038 2.3877 -0.0005 5 6 1.9644 3.6029 0.0000 6 7 3.2793 3.6590 0.0015 7 6 4.0262 2.5610 0.0021 8 6 5.5034 2.6780 0.0044 9 8 6.1922 1.6769 0.0045 10 7 6.0830 3.8948 0.0054 11 6 7.5434 4.0104 0.0138 12 1 7.9688 3.1982 0.6033 13 6 7.9453 5.3522 0.6295 14 6 7.5345 5.3828 2.0792 15 1 7.0371 4.5303 2.5176 16 6 7.7949 6.4988 2.8460 17 7 8.4011 7.5366 2.3122 18 14 7.2851 6.5370 4.6427 19 1 6.6249 5.2550 4.9973 20 1 8.4869 6.7264 5.4942 21 1 6.3390 7.6597 4.8651 22 6 8.0619 3.9306 -1.3989 23 6 7.3782 4.5597 -2.4226 24 6 7.8558 4.4898 -3.7179 25 6 9.0125 3.7840 -3.9909 26 6 9.6933 3.1505 -2.9681 27 6 9.2178 3.2237 -1.6722 28 6 3.4346 1.3021 -0.0047 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 0.2244 2.3532 -0.0005 33 1 1.3927 4.5192 -0.0008 34 1 5.5333 4.6939 0.0050 35 1 9.0255 5.4771 0.5552 36 1 7.4483 6.1610 0.0940 37 1 8.5845 8.3215 2.8517 38 1 6.4727 5.1087 -2.2097 39 1 7.3237 4.9845 -4.5171 40 1 9.3842 3.7271 -5.0033 41 1 10.5969 2.5987 -3.1814 42 1 9.7497 2.7287 -0.8730 43 1 4.0435 0.4101 -0.0088 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153495077.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:09 Heat of formation + Delta-G solvation = -35.803725 kcal Electronic energy + Delta-G solvation = -26766.744444 eV Core-core repulsion = 22969.243063 eV Total energy + Delta-G solvation = -3797.501381 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.93056 -40.89411 -39.82162 -38.96639 -36.86695 -34.76156 -33.11506 -32.70188 -31.92700 -31.63943 -30.53371 -28.54494 -26.95672 -25.17259 -24.42733 -23.79977 -23.35576 -22.04351 -21.22376 -19.74592 -18.66427 -18.41420 -17.74704 -17.26035 -17.03259 -16.89372 -16.70464 -16.45864 -16.30614 -15.75479 -15.74318 -15.32228 -14.88785 -14.74995 -14.60117 -14.34312 -14.19448 -14.01904 -13.69499 -13.48741 -13.36575 -12.93635 -12.64998 -12.53926 -12.49615 -12.31314 -12.15295 -11.88972 -11.61975 -11.37851 -11.30809 -10.68360 -10.57589 -10.40488 -10.02730 -9.97970 -9.75891 -9.53432 -8.20362 -6.30277 -0.45906 0.21220 0.50092 0.55658 1.37636 1.39323 1.51688 1.70473 1.87372 2.36630 2.39935 2.80835 2.95084 3.12054 3.19121 3.58335 3.79915 3.95019 3.97607 4.02824 4.16810 4.21007 4.32246 4.34322 4.39223 4.42957 4.48508 4.63548 4.70241 4.75054 4.75778 4.78015 4.91106 5.11565 5.19214 5.23477 5.35352 5.41390 5.57639 5.60851 5.63644 5.77191 5.87392 6.14278 6.15395 6.19857 6.49472 6.81306 6.83825 7.17896 7.38227 8.90742 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.007963 B = 0.004468 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3515.519237 B = 6265.756237 C = 8917.489070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.326 6.326 3 C 0.161 3.839 4 C -0.224 4.224 5 C 0.134 3.866 6 N -0.500 5.500 7 C 0.102 3.898 8 C 0.561 3.439 9 O -0.574 6.574 10 N -0.673 5.673 11 C 0.196 3.804 12 H 0.063 0.937 13 C 0.039 3.961 14 C -0.530 4.530 15 H 0.049 0.951 16 C 0.013 3.987 17 N -0.924 5.924 18 Si 0.957 3.043 19 H -0.273 1.273 20 H -0.278 1.278 21 H -0.274 1.274 22 C -0.099 4.099 23 C -0.123 4.123 24 C -0.125 4.125 25 C -0.127 4.127 26 C -0.122 4.122 27 C -0.131 4.131 28 C -0.162 4.162 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.122 0.878 32 H 0.187 0.813 33 H 0.202 0.798 34 H 0.414 0.586 35 H 0.009 0.991 36 H 0.011 0.989 37 H 0.265 0.735 38 H 0.115 0.885 39 H 0.146 0.854 40 H 0.153 0.847 41 H 0.147 0.853 42 H 0.116 0.884 43 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.411 -10.059 -10.440 21.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.237 6.237 3 C 0.107 3.893 4 C -0.245 4.245 5 C -0.025 4.025 6 N -0.216 5.216 7 C -0.034 4.034 8 C 0.347 3.653 9 O -0.454 6.454 10 N -0.320 5.320 11 C 0.091 3.909 12 H 0.081 0.919 13 C 0.002 3.998 14 C -0.568 4.568 15 H 0.068 0.932 16 C -0.186 4.186 17 N -0.564 5.564 18 Si 0.782 3.218 19 H -0.197 1.197 20 H -0.204 1.204 21 H -0.199 1.199 22 C -0.100 4.100 23 C -0.141 4.141 24 C -0.142 4.142 25 C -0.145 4.145 26 C -0.140 4.140 27 C -0.149 4.149 28 C -0.184 4.184 29 H 0.093 0.907 30 H 0.095 0.905 31 H 0.140 0.860 32 H 0.204 0.796 33 H 0.219 0.781 34 H 0.251 0.749 35 H 0.027 0.973 36 H 0.029 0.971 37 H 0.074 0.926 38 H 0.133 0.867 39 H 0.164 0.836 40 H 0.171 0.829 41 H 0.165 0.835 42 H 0.134 0.866 43 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -15.336 -10.006 -10.387 21.052 hybrid contribution -0.625 -0.127 1.313 1.459 sum -15.961 -10.132 -9.074 20.970 Atomic orbital electron populations 1.23556 0.75004 1.06359 1.03243 1.86088 1.24647 1.25464 1.87546 1.19190 0.91226 0.86216 0.92696 1.22795 1.03603 0.91576 1.06480 1.23306 0.88582 0.99292 0.91354 1.67618 1.09131 1.30849 1.13964 1.20656 0.93130 0.89690 0.99902 1.18252 0.86968 0.83612 0.76478 1.90706 1.64547 1.37486 1.52619 1.45737 1.07413 1.08100 1.70795 1.19881 0.79300 0.99788 0.91896 0.91877 1.19124 0.95878 0.90109 0.94698 1.21398 1.38365 1.00889 0.96149 0.93236 1.25751 0.95004 0.95188 1.02660 1.70066 1.42622 1.05805 1.37917 0.85528 0.78147 0.78080 0.80050 1.19749 1.20405 1.19911 1.20398 0.96372 0.97825 0.95428 1.21059 1.00075 0.99593 0.93368 1.21424 0.97201 0.99522 0.96096 1.21480 0.95344 0.97427 1.00242 1.21406 1.00683 0.99934 0.91968 1.21188 0.96282 0.99332 0.98139 1.21331 0.93576 0.98690 1.04798 0.90731 0.90491 0.85971 0.79596 0.78105 0.74939 0.97250 0.97066 0.92639 0.86704 0.83650 0.82893 0.83542 0.86602 0.84289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.10 9.84 113.37 1.12 1.22 16 2 O -0.33 -6.41 10.51 -90.65 -0.95 -7.36 16 3 C 0.16 3.69 6.73 22.75 0.15 3.84 16 4 C -0.22 -3.75 9.12 22.52 0.21 -3.55 16 5 C 0.13 2.73 11.17 84.74 0.95 3.67 16 6 N -0.50 -15.14 9.54 -185.14 -1.77 -16.90 16 7 C 0.10 3.55 6.75 41.85 0.28 3.83 16 8 C 0.56 23.42 7.77 86.89 0.68 24.10 16 9 O -0.57 -26.85 15.98 -3.76 -0.06 -26.91 16 10 N -0.67 -28.43 4.01 -448.66 -1.80 -30.23 16 11 C 0.20 8.96 2.12 44.25 0.09 9.05 16 12 H 0.06 3.15 7.43 -2.39 -0.02 3.13 16 13 C 0.04 2.07 4.50 29.85 0.13 2.20 16 14 C -0.53 -30.09 8.84 25.60 0.23 -29.86 16 15 H 0.05 2.84 7.74 -2.91 -0.02 2.82 16 16 C 0.01 0.72 5.46 84.66 0.46 1.19 16 17 N -0.92 -55.05 13.29 21.45 0.28 -54.77 16 18 Si 0.96 44.82 29.54 68.60 2.03 46.85 16 19 H -0.27 -12.67 7.11 99.48 0.71 -11.97 16 20 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 21 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 22 C -0.10 -4.03 4.92 -19.87 -0.10 -4.12 16 23 C -0.12 -4.43 9.33 22.27 0.21 -4.23 16 24 C -0.12 -3.65 10.05 22.27 0.22 -3.43 16 25 C -0.13 -3.39 10.05 22.27 0.22 -3.17 16 26 C -0.12 -3.62 10.05 22.27 0.22 -3.39 16 27 C -0.13 -4.85 9.67 22.27 0.22 -4.63 16 28 C -0.16 -4.95 9.60 22.72 0.22 -4.73 16 29 H 0.07 0.43 7.71 -2.39 -0.02 0.41 16 30 H 0.08 0.39 7.71 -2.39 -0.02 0.38 16 31 H 0.12 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.19 1.38 6.45 -2.91 -0.02 1.36 16 33 H 0.20 2.47 8.06 -2.91 -0.02 2.45 16 34 H 0.41 16.99 7.93 -92.71 -0.74 16.26 16 35 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 36 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.26 14.81 8.31 -92.72 -0.77 14.04 16 38 H 0.11 4.08 7.71 -2.91 -0.02 4.06 16 39 H 0.15 3.30 8.06 -2.91 -0.02 3.27 16 40 H 0.15 2.89 8.06 -2.91 -0.02 2.86 16 41 H 0.15 3.36 8.06 -2.91 -0.02 3.34 16 42 H 0.12 4.23 8.04 -2.91 -0.02 4.20 16 43 H 0.14 4.52 7.64 -2.91 -0.02 4.50 16 Total: -1.00 -75.75 373.44 3.54 -72.21 By element: Atomic # 1 Polarization: 28.83 SS G_CDS: 0.30 Total: 29.13 kcal Atomic # 6 Polarization: -17.53 SS G_CDS: 5.51 Total: -12.02 kcal Atomic # 7 Polarization: -98.63 SS G_CDS: -3.28 Total: -101.91 kcal Atomic # 8 Polarization: -33.26 SS G_CDS: -1.01 Total: -34.27 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Total: -75.75 3.54 -72.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153495077.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.408 kcal (2) G-P(sol) polarization free energy of solvation -75.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds