Wall clock time and date at job start Tue Mar 31 2020 14:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35697 * 119.44381 * 2 1 4 4 C 1.35265 * 121.00279 * 180.02562 * 3 2 1 5 5 C 1.41157 * 119.86660 * 359.97349 * 4 3 2 6 6 C 1.48457 * 120.53560 * 179.97438 * 5 4 3 7 7 O 1.21473 * 120.00189 * 180.02562 * 6 5 4 8 8 N 1.34780 * 119.99955 * 0.02562 * 6 5 4 9 9 C 1.46496 * 119.99742 * 175.19603 * 8 6 5 10 10 H 1.08996 * 109.47221 * 326.79674 * 9 8 6 11 11 C 1.52996 * 109.47686 * 86.79954 * 9 8 6 12 12 C 1.50699 * 109.47579 * 185.71509 * 11 9 8 13 13 H 1.07997 * 119.99491 * 355.52063 * 12 11 9 14 14 C 1.37873 * 119.99920 * 175.24703 * 12 11 9 15 15 N 1.31513 * 120.00539 * 0.27326 * 14 12 11 16 16 Si 1.86805 * 119.99762 * 180.27441 * 14 12 11 17 17 H 1.48499 * 109.47319 * 359.97438 * 16 14 12 18 18 H 1.48504 * 109.47060 * 119.99764 * 16 14 12 19 19 H 1.48498 * 109.47028 * 239.99777 * 16 14 12 20 20 C 1.50705 * 109.46861 * 206.79668 * 9 8 6 21 21 C 1.38232 * 120.00266 * 319.72634 * 20 9 8 22 22 C 1.38231 * 120.00380 * 179.78692 * 21 20 9 23 23 C 1.38241 * 119.99770 * 0.44287 * 22 21 20 24 24 C 1.38237 * 119.99890 * 359.81002 * 23 22 21 25 25 C 1.38234 * 119.99851 * 359.97438 * 24 23 22 26 26 C 1.38289 * 118.92266 * 0.25799 * 5 4 3 27 27 C 1.34601 * 119.43756 * 179.97438 * 2 1 3 28 28 O 1.22013 * 119.96711 * 0.02562 * 27 2 1 29 29 H 1.09006 * 109.47096 * 90.00081 * 1 2 3 30 30 H 1.08995 * 109.47613 * 210.00356 * 1 2 3 31 31 H 1.08995 * 109.47007 * 330.00512 * 1 2 3 32 32 H 1.08001 * 119.49692 * 359.97438 * 3 2 1 33 33 H 1.08000 * 120.06270 * 179.97438 * 4 3 2 34 34 H 0.97001 * 119.99913 * 355.19208 * 8 6 5 35 35 H 1.09005 * 109.47195 * 65.70972 * 11 9 8 36 36 H 1.09007 * 109.47149 * 305.71769 * 11 9 8 37 37 H 0.96995 * 120.00515 * 179.97438 * 15 14 12 38 38 H 1.08004 * 119.99462 * 359.97438 * 21 20 9 39 39 H 1.08000 * 120.00256 * 180.27432 * 22 21 20 40 40 H 1.07996 * 120.00243 * 179.83616 * 23 22 21 41 41 H 1.07993 * 119.99969 * 180.02562 * 24 23 22 42 42 H 1.08007 * 119.99867 * 179.97438 * 25 24 23 43 43 H 1.08001 * 120.48774 * 179.75108 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1320 1.1817 0.0000 4 6 3.4842 1.2185 -0.0005 5 6 4.2202 0.0140 -0.0005 6 6 5.7046 0.0370 -0.0016 7 8 6.3282 -1.0054 -0.0021 8 7 6.3602 1.2146 -0.0022 9 6 7.8212 1.2395 0.1030 10 1 8.1548 0.4096 0.7258 11 6 8.4354 1.1090 -1.2922 12 6 9.9332 0.9934 -1.1731 13 1 10.4065 1.0838 -0.2066 14 6 10.6987 0.7667 -2.2972 15 7 10.1223 0.6567 -3.4741 16 14 12.5547 0.6158 -2.1483 17 1 12.9520 0.7770 -0.7266 18 1 12.9832 -0.7205 -2.6341 19 1 13.2042 1.6716 -2.9661 20 6 8.2580 2.5412 0.7242 21 6 7.6310 3.7210 0.3698 22 6 8.0286 4.9144 0.9429 23 6 9.0596 4.9292 1.8638 24 6 9.6902 3.7500 2.2143 25 6 9.2894 2.5561 1.6445 26 6 3.5360 -1.1878 -0.0054 27 6 2.1265 -1.1722 0.0005 28 8 1.5055 -2.2225 0.0005 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5137 32 1 1.5748 2.1069 -0.0004 33 1 3.9996 2.1676 -0.0009 34 1 5.8648 2.0456 -0.0722 35 1 8.1847 1.9898 -1.8834 36 1 8.0400 0.2187 -1.7814 37 1 10.6609 0.4976 -4.2650 38 1 6.8283 3.7099 -0.3527 39 1 7.5357 5.8356 0.6693 40 1 9.3721 5.8619 2.3096 41 1 10.4953 3.7615 2.9340 42 1 9.7824 1.6348 1.9181 43 1 4.0738 -2.1244 -0.0096 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153700152.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:58 Heat of formation + Delta-G solvation = -8.835009 kcal Electronic energy + Delta-G solvation = -26735.401316 eV Core-core repulsion = 22939.069387 eV Total energy + Delta-G solvation = -3796.331929 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.50457 -39.73363 -38.59355 -37.02998 -35.27090 -34.60411 -32.84706 -31.20315 -30.50019 -30.09156 -28.76845 -28.00037 -25.35861 -23.96083 -23.46809 -22.42630 -22.11288 -20.58879 -19.70936 -18.30846 -17.58770 -17.23461 -16.58517 -16.28927 -16.09766 -15.68180 -15.27477 -14.80330 -14.69244 -14.35596 -14.29721 -14.16307 -13.59910 -13.46386 -13.20761 -13.03005 -12.87572 -12.85010 -12.55955 -12.17909 -12.01034 -11.94055 -11.55332 -11.18329 -10.87907 -10.75120 -10.69466 -10.40061 -10.21285 -10.09435 -9.92338 -9.68628 -9.12905 -8.63353 -8.52912 -8.35591 -8.19274 -8.10555 -6.00281 -4.02028 0.36627 1.49426 1.75418 1.79287 2.37881 2.97372 3.32303 3.34918 3.40497 3.44105 3.72884 4.20284 4.24563 4.38050 4.46803 4.69451 4.84374 4.91593 4.92659 5.11511 5.20024 5.21837 5.27062 5.32085 5.37788 5.46344 5.59172 5.81601 5.85116 5.93076 6.05249 6.11271 6.23131 6.32434 6.44483 6.64911 6.72364 6.78694 6.79915 6.85123 7.08887 7.37268 7.55447 7.67539 7.77944 7.88902 7.97502 8.33207 8.50698 9.02486 9.61376 11.11398 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.012307 B = 0.003441 C = 0.002876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2274.554978 B = 8135.846927 C = 9733.034777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.498 5.498 3 C 0.126 3.874 4 C -0.209 4.209 5 C -0.027 4.027 6 C 0.547 3.453 7 O -0.515 6.515 8 N -0.711 5.711 9 C 0.180 3.820 10 H 0.091 0.909 11 C 0.024 3.976 12 C -0.513 4.513 13 H 0.060 0.940 14 C 0.060 3.940 15 N -0.893 5.893 16 Si 0.890 3.110 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.285 1.285 20 C -0.049 4.049 21 C -0.120 4.120 22 C -0.121 4.121 23 C -0.134 4.134 24 C -0.120 4.120 25 C -0.098 4.098 26 C -0.173 4.173 27 C 0.513 3.487 28 O -0.546 6.546 29 H 0.076 0.924 30 H 0.094 0.906 31 H 0.085 0.915 32 H 0.167 0.833 33 H 0.148 0.852 34 H 0.392 0.608 35 H 0.017 0.983 36 H 0.033 0.967 37 H 0.260 0.740 38 H 0.114 0.886 39 H 0.115 0.885 40 H 0.114 0.886 41 H 0.116 0.884 42 H 0.123 0.877 43 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.517 9.437 9.788 21.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.210 5.210 3 C 0.000 4.000 4 C -0.233 4.233 5 C -0.033 4.033 6 C 0.332 3.668 7 O -0.391 6.391 8 N -0.362 5.362 9 C 0.077 3.923 10 H 0.109 0.891 11 C -0.014 4.014 12 C -0.552 4.552 13 H 0.078 0.922 14 C -0.141 4.141 15 N -0.532 5.532 16 Si 0.718 3.282 17 H -0.196 1.196 18 H -0.210 1.210 19 H -0.211 1.211 20 C -0.050 4.050 21 C -0.138 4.138 22 C -0.139 4.139 23 C -0.152 4.152 24 C -0.138 4.138 25 C -0.116 4.116 26 C -0.196 4.196 27 C 0.314 3.686 28 O -0.428 6.428 29 H 0.095 0.905 30 H 0.112 0.888 31 H 0.104 0.896 32 H 0.184 0.816 33 H 0.166 0.834 34 H 0.228 0.772 35 H 0.035 0.965 36 H 0.051 0.949 37 H 0.069 0.931 38 H 0.132 0.868 39 H 0.133 0.867 40 H 0.132 0.868 41 H 0.134 0.866 42 H 0.141 0.859 43 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -16.449 7.969 9.622 20.656 hybrid contribution 0.977 0.602 -0.299 1.186 sum -15.472 8.570 9.324 19.994 Atomic orbital electron populations 1.22173 0.77145 1.04979 1.03996 1.45370 1.09373 1.06829 1.59457 1.21784 0.93498 0.89337 0.95373 1.20696 0.92544 0.98647 1.11373 1.20656 0.94278 0.93765 0.94639 1.18200 0.86283 0.84484 0.77864 1.90822 1.68120 1.32034 1.48103 1.46183 1.08755 1.07670 1.73596 1.20414 0.76616 0.94081 1.01145 0.89106 1.19442 0.95700 0.98016 0.88228 1.21097 0.91159 1.49098 0.93844 0.92197 1.24954 0.98535 0.95262 0.95386 1.69968 1.35354 1.49496 0.98372 0.86557 0.85803 0.77620 0.78183 1.19648 1.21002 1.21122 1.19919 0.95664 0.94830 0.94553 1.20811 1.00862 0.92312 0.99858 1.20971 0.97884 0.97419 0.97633 1.20993 0.97355 0.97717 0.99173 1.21054 0.99723 0.92737 1.00292 1.20997 0.96384 0.98293 0.95973 1.22749 0.92000 0.99978 1.04891 1.17110 0.88930 0.82828 0.79692 1.90957 1.69382 1.29741 1.52768 0.90495 0.88753 0.89605 0.81596 0.83402 0.77204 0.96519 0.94872 0.93055 0.86765 0.86673 0.86839 0.86569 0.85948 0.81842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.35 10.34 59.85 0.62 0.97 16 2 N -0.50 -4.72 2.98 -127.13 -0.38 -5.10 16 3 C 0.13 0.89 10.25 -16.90 -0.17 0.72 16 4 C -0.21 -1.93 9.50 -39.53 -0.38 -2.30 16 5 C -0.03 -0.36 5.91 -104.56 -0.62 -0.98 16 6 C 0.55 9.54 7.78 -12.05 -0.09 9.45 16 7 O -0.52 -11.32 16.08 5.39 0.09 -11.23 16 8 N -0.71 -11.51 4.97 -55.69 -0.28 -11.78 16 9 C 0.18 3.57 2.19 -69.08 -0.15 3.41 16 10 H 0.09 1.96 7.45 -51.93 -0.39 1.57 16 11 C 0.02 0.60 4.73 -27.89 -0.13 0.47 16 12 C -0.51 -14.05 8.64 -34.44 -0.30 -14.35 16 13 H 0.06 1.58 6.43 -52.49 -0.34 1.24 16 14 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 15 N -0.89 -26.76 13.29 55.43 0.74 -26.03 16 16 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 17 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 18 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 19 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 20 C -0.05 -0.86 4.49 -104.62 -0.47 -1.33 16 21 C -0.12 -1.81 9.06 -39.59 -0.36 -2.17 16 22 C -0.12 -1.62 10.05 -39.58 -0.40 -2.02 16 23 C -0.13 -1.80 10.05 -39.58 -0.40 -2.19 16 24 C -0.12 -1.75 10.05 -39.58 -0.40 -2.15 16 25 C -0.10 -1.66 8.63 -39.58 -0.34 -2.00 16 26 C -0.17 -2.54 9.61 -38.53 -0.37 -2.91 16 27 C 0.51 7.13 7.42 -15.31 -0.11 7.01 16 28 O -0.55 -9.27 16.62 4.91 0.08 -9.19 16 29 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.09 0.70 7.37 -51.93 -0.38 0.32 16 31 H 0.09 0.22 8.00 -51.93 -0.42 -0.19 16 32 H 0.17 0.40 8.02 -52.49 -0.42 -0.02 16 33 H 0.15 0.99 6.51 -52.49 -0.34 0.65 16 34 H 0.39 4.91 5.01 -40.82 -0.20 4.71 16 35 H 0.02 0.43 8.13 -51.93 -0.42 0.01 16 36 H 0.03 0.95 8.14 -51.93 -0.42 0.52 16 37 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 38 H 0.11 1.49 6.91 -52.48 -0.36 1.13 16 39 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 40 H 0.11 1.21 8.06 -52.49 -0.42 0.79 16 41 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 42 H 0.12 2.06 7.83 -52.48 -0.41 1.65 16 43 H 0.16 2.61 7.69 -52.49 -0.40 2.21 16 LS Contribution 367.07 15.07 5.53 5.53 Total: -1.00 -36.77 367.07 -8.75 -45.52 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -5.34 Total: 4.35 kcal Atomic # 6 Polarization: -4.60 SS G_CDS: -4.17 Total: -8.77 kcal Atomic # 7 Polarization: -42.99 SS G_CDS: 0.08 Total: -42.91 kcal Atomic # 8 Polarization: -20.59 SS G_CDS: 0.17 Total: -20.42 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -36.77 -8.75 -45.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153700152.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.685 kcal (2) G-P(sol) polarization free energy of solvation -36.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds