Wall clock time and date at job start Tue Mar 31 2020 14:03:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35697 * 119.44381 * 2 1 4 4 C 1.35265 * 121.00279 * 180.02562 * 3 2 1 5 5 C 1.41157 * 119.86660 * 359.97349 * 4 3 2 6 6 C 1.48457 * 120.53560 * 179.97438 * 5 4 3 7 7 O 1.21473 * 120.00189 * 180.02562 * 6 5 4 8 8 N 1.34780 * 119.99955 * 0.02562 * 6 5 4 9 9 C 1.46496 * 119.99742 * 175.19603 * 8 6 5 10 10 H 1.08996 * 109.47221 * 326.79674 * 9 8 6 11 11 C 1.52996 * 109.47686 * 86.79954 * 9 8 6 12 12 C 1.50699 * 109.47579 * 185.71509 * 11 9 8 13 13 H 1.07997 * 119.99491 * 355.52063 * 12 11 9 14 14 C 1.37873 * 119.99920 * 175.24703 * 12 11 9 15 15 N 1.31513 * 120.00539 * 0.27326 * 14 12 11 16 16 Si 1.86805 * 119.99762 * 180.27441 * 14 12 11 17 17 H 1.48499 * 109.47319 * 359.97438 * 16 14 12 18 18 H 1.48504 * 109.47060 * 119.99764 * 16 14 12 19 19 H 1.48498 * 109.47028 * 239.99777 * 16 14 12 20 20 C 1.50705 * 109.46861 * 206.79668 * 9 8 6 21 21 C 1.38232 * 120.00266 * 319.72634 * 20 9 8 22 22 C 1.38231 * 120.00380 * 179.78692 * 21 20 9 23 23 C 1.38241 * 119.99770 * 0.44287 * 22 21 20 24 24 C 1.38237 * 119.99890 * 359.81002 * 23 22 21 25 25 C 1.38234 * 119.99851 * 359.97438 * 24 23 22 26 26 C 1.38289 * 118.92266 * 0.25799 * 5 4 3 27 27 C 1.34601 * 119.43756 * 179.97438 * 2 1 3 28 28 O 1.22013 * 119.96711 * 0.02562 * 27 2 1 29 29 H 1.09006 * 109.47096 * 90.00081 * 1 2 3 30 30 H 1.08995 * 109.47613 * 210.00356 * 1 2 3 31 31 H 1.08995 * 109.47007 * 330.00512 * 1 2 3 32 32 H 1.08001 * 119.49692 * 359.97438 * 3 2 1 33 33 H 1.08000 * 120.06270 * 179.97438 * 4 3 2 34 34 H 0.97001 * 119.99913 * 355.19208 * 8 6 5 35 35 H 1.09005 * 109.47195 * 65.70972 * 11 9 8 36 36 H 1.09007 * 109.47149 * 305.71769 * 11 9 8 37 37 H 0.96995 * 120.00515 * 179.97438 * 15 14 12 38 38 H 1.08004 * 119.99462 * 359.97438 * 21 20 9 39 39 H 1.08000 * 120.00256 * 180.27432 * 22 21 20 40 40 H 1.07996 * 120.00243 * 179.83616 * 23 22 21 41 41 H 1.07993 * 119.99969 * 180.02562 * 24 23 22 42 42 H 1.08007 * 119.99867 * 179.97438 * 25 24 23 43 43 H 1.08001 * 120.48774 * 179.75108 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1320 1.1817 0.0000 4 6 3.4842 1.2185 -0.0005 5 6 4.2202 0.0140 -0.0005 6 6 5.7046 0.0370 -0.0016 7 8 6.3282 -1.0054 -0.0021 8 7 6.3602 1.2146 -0.0022 9 6 7.8212 1.2395 0.1030 10 1 8.1548 0.4096 0.7258 11 6 8.4354 1.1090 -1.2922 12 6 9.9332 0.9934 -1.1731 13 1 10.4065 1.0838 -0.2066 14 6 10.6987 0.7667 -2.2972 15 7 10.1223 0.6567 -3.4741 16 14 12.5547 0.6158 -2.1483 17 1 12.9520 0.7770 -0.7266 18 1 12.9832 -0.7205 -2.6341 19 1 13.2042 1.6716 -2.9661 20 6 8.2580 2.5412 0.7242 21 6 7.6310 3.7210 0.3698 22 6 8.0286 4.9144 0.9429 23 6 9.0596 4.9292 1.8638 24 6 9.6902 3.7500 2.2143 25 6 9.2894 2.5561 1.6445 26 6 3.5360 -1.1878 -0.0054 27 6 2.1265 -1.1722 0.0005 28 8 1.5055 -2.2225 0.0005 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5137 32 1 1.5748 2.1069 -0.0004 33 1 3.9996 2.1676 -0.0009 34 1 5.8648 2.0456 -0.0722 35 1 8.1847 1.9898 -1.8834 36 1 8.0400 0.2187 -1.7814 37 1 10.6609 0.4976 -4.2650 38 1 6.8283 3.7099 -0.3527 39 1 7.5357 5.8356 0.6693 40 1 9.3721 5.8619 2.3096 41 1 10.4953 3.7615 2.9340 42 1 9.7824 1.6348 1.9181 43 1 4.0738 -2.1244 -0.0096 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153700152.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:57 Heat of formation + Delta-G solvation = -33.935406 kcal Electronic energy + Delta-G solvation = -26736.489751 eV Core-core repulsion = 22939.069387 eV Total energy + Delta-G solvation = -3797.420364 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.46050 -41.12366 -39.85361 -38.06094 -36.80313 -35.62416 -34.85825 -32.66480 -31.64087 -30.98799 -30.37463 -28.93914 -26.89135 -25.17850 -24.44772 -23.91128 -23.43468 -21.84508 -21.21959 -19.42653 -18.75055 -18.39200 -18.06226 -17.35625 -17.14828 -16.82082 -16.69509 -16.62896 -15.93250 -15.87106 -15.48960 -15.22264 -14.90341 -14.56864 -14.25535 -14.21978 -14.13829 -14.07933 -13.87429 -13.45415 -13.13002 -12.99223 -12.87908 -12.78711 -12.63046 -12.51268 -12.03592 -11.85501 -11.67682 -11.60150 -11.32984 -11.13857 -10.95347 -10.57341 -10.12118 -9.66638 -9.43928 -9.09096 -8.19829 -6.28330 -0.67163 0.57378 0.62477 0.64640 1.36961 1.38751 1.50641 1.60467 1.71664 2.00251 2.41395 2.62340 3.02640 3.15847 3.47515 3.65290 3.71320 3.85750 4.04746 4.08944 4.15333 4.28469 4.39142 4.42995 4.48676 4.49943 4.69248 4.75632 4.79862 4.83952 4.85814 4.91190 5.11562 5.15878 5.20406 5.28846 5.43484 5.47792 5.54006 5.68769 5.73462 5.76093 5.90787 5.91854 6.20406 6.25926 6.48056 6.80552 6.84753 7.13466 7.39281 8.92849 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.012307 B = 0.003441 C = 0.002876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2274.554978 B = 8135.846927 C = 9733.034777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 N -0.488 5.488 3 C 0.169 3.831 4 C -0.226 4.226 5 C -0.013 4.013 6 C 0.540 3.460 7 O -0.574 6.574 8 N -0.693 5.693 9 C 0.196 3.804 10 H 0.060 0.940 11 C 0.036 3.964 12 C -0.523 4.523 13 H 0.066 0.934 14 C 0.001 3.999 15 N -0.933 5.933 16 Si 0.958 3.042 17 H -0.259 1.259 18 H -0.285 1.285 19 H -0.276 1.276 20 C -0.075 4.075 21 C -0.126 4.126 22 C -0.115 4.115 23 C -0.128 4.128 24 C -0.124 4.124 25 C -0.124 4.124 26 C -0.219 4.219 27 C 0.506 3.494 28 O -0.594 6.594 29 H 0.090 0.910 30 H 0.074 0.926 31 H 0.137 0.863 32 H 0.238 0.762 33 H 0.182 0.818 34 H 0.414 0.586 35 H 0.004 0.996 36 H -0.018 1.018 37 H 0.261 0.739 38 H 0.132 0.868 39 H 0.154 0.846 40 H 0.150 0.850 41 H 0.138 0.862 42 H 0.106 0.894 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.997 14.801 11.025 25.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 N -0.196 5.196 3 C 0.042 3.958 4 C -0.248 4.248 5 C -0.021 4.021 6 C 0.326 3.674 7 O -0.454 6.454 8 N -0.345 5.345 9 C 0.092 3.908 10 H 0.078 0.922 11 C -0.002 4.002 12 C -0.562 4.562 13 H 0.084 0.916 14 C -0.196 4.196 15 N -0.574 5.574 16 Si 0.783 3.217 17 H -0.183 1.183 18 H -0.211 1.211 19 H -0.201 1.201 20 C -0.075 4.075 21 C -0.144 4.144 22 C -0.133 4.133 23 C -0.146 4.146 24 C -0.142 4.142 25 C -0.143 4.143 26 C -0.243 4.243 27 C 0.309 3.691 28 O -0.481 6.481 29 H 0.108 0.892 30 H 0.093 0.907 31 H 0.156 0.844 32 H 0.254 0.746 33 H 0.199 0.801 34 H 0.254 0.746 35 H 0.022 0.978 36 H 0.001 0.999 37 H 0.070 0.930 38 H 0.150 0.850 39 H 0.171 0.829 40 H 0.167 0.833 41 H 0.156 0.844 42 H 0.125 0.875 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -17.968 13.403 10.877 24.916 hybrid contribution 1.367 -0.918 -0.654 1.772 sum -16.602 12.485 10.223 23.151 Atomic orbital electron populations 1.22556 0.74346 1.06617 1.05417 1.45552 1.11201 1.06292 1.56582 1.22835 0.92971 0.90252 0.89770 1.21045 0.93656 0.97659 1.12393 1.20487 0.91631 0.95544 0.94414 1.18936 0.88160 0.83806 0.76448 1.90787 1.69831 1.34127 1.50632 1.45918 1.07490 1.08425 1.72655 1.19809 0.78251 0.95236 0.97497 0.92163 1.19198 0.95188 0.94843 0.90925 1.21509 0.92474 1.48125 0.94049 0.91589 1.25877 1.03598 0.95067 0.95070 1.70105 1.37215 1.50890 0.99187 0.85500 0.79852 0.77558 0.78822 1.18302 1.21066 1.20124 1.19725 0.97373 0.94194 0.96238 1.21072 1.01160 0.92011 1.00166 1.21416 0.97445 0.97933 0.96470 1.21473 0.96367 0.98451 0.98267 1.21342 1.00310 0.92245 1.00328 1.21069 0.96930 0.99085 0.97192 1.22462 0.93130 0.99335 1.09353 1.16889 0.88323 0.83838 0.80009 1.90915 1.69919 1.31637 1.55648 0.89162 0.90702 0.84438 0.74572 0.80061 0.74649 0.97760 0.99924 0.92994 0.84979 0.82870 0.83275 0.84420 0.87549 0.85401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.42 10.34 127.77 1.32 1.74 16 2 N -0.49 -7.88 2.98 -674.32 -2.01 -9.89 16 3 C 0.17 1.47 10.25 83.41 0.86 2.33 16 4 C -0.23 -3.43 9.50 22.30 0.21 -3.22 16 5 C -0.01 -0.38 5.91 -19.82 -0.12 -0.50 16 6 C 0.54 20.33 7.78 86.97 0.68 21.00 16 7 O -0.57 -28.27 16.08 -3.63 -0.06 -28.32 16 8 N -0.69 -23.25 4.97 -448.40 -2.23 -25.47 16 9 C 0.20 8.24 2.19 44.25 0.10 8.34 16 10 H 0.06 2.86 7.45 -2.39 -0.02 2.85 16 11 C 0.04 1.95 4.73 29.85 0.14 2.09 16 12 C -0.52 -29.89 8.64 25.60 0.22 -29.66 16 13 H 0.07 3.61 6.43 -2.91 -0.02 3.59 16 14 C 0.00 0.08 5.46 84.65 0.46 0.54 16 15 N -0.93 -58.14 13.29 21.45 0.28 -57.85 16 16 Si 0.96 45.48 29.54 68.60 2.03 47.51 16 17 H -0.26 -11.65 7.11 99.48 0.71 -10.95 16 18 H -0.28 -13.46 7.11 99.48 0.71 -12.76 16 19 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 20 C -0.07 -2.62 4.49 -19.86 -0.09 -2.71 16 21 C -0.13 -3.49 9.06 22.27 0.20 -3.29 16 22 C -0.11 -2.56 10.05 22.27 0.22 -2.34 16 23 C -0.13 -2.86 10.05 22.27 0.22 -2.64 16 24 C -0.12 -3.34 10.05 22.27 0.22 -3.12 16 25 C -0.12 -4.23 8.63 22.27 0.19 -4.03 16 26 C -0.22 -7.13 9.61 22.95 0.22 -6.91 16 27 C 0.51 14.64 7.42 84.94 0.63 15.27 16 28 O -0.59 -21.68 16.62 -5.36 -0.09 -21.77 16 29 H 0.09 0.59 8.14 -2.38 -0.02 0.57 16 30 H 0.07 1.00 7.37 -2.39 -0.02 0.98 16 31 H 0.14 -0.22 8.00 -2.39 -0.02 -0.24 16 32 H 0.24 -1.09 8.02 -2.91 -0.02 -1.11 16 33 H 0.18 1.51 6.51 -2.91 -0.02 1.49 16 34 H 0.41 9.86 5.01 -92.71 -0.46 9.39 16 35 H 0.00 0.23 8.13 -2.38 -0.02 0.21 16 36 H -0.02 -1.11 8.14 -2.38 -0.02 -1.13 16 37 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 38 H 0.13 3.05 6.91 -2.91 -0.02 3.03 16 39 H 0.15 2.28 8.06 -2.91 -0.02 2.25 16 40 H 0.15 2.30 8.06 -2.91 -0.02 2.28 16 41 H 0.14 3.00 8.06 -2.91 -0.02 2.98 16 42 H 0.11 3.81 7.83 -2.91 -0.02 3.78 16 43 H 0.13 4.91 7.69 -2.91 -0.02 4.89 16 Total: -1.00 -92.33 367.07 4.20 -88.13 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: 0.58 Total: 14.78 kcal Atomic # 6 Polarization: -12.81 SS G_CDS: 5.70 Total: -7.11 kcal Atomic # 7 Polarization: -89.26 SS G_CDS: -3.95 Total: -93.21 kcal Atomic # 8 Polarization: -49.94 SS G_CDS: -0.15 Total: -50.09 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.51 kcal Total: -92.33 4.20 -88.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153700152.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.193 kcal (2) G-P(sol) polarization free energy of solvation -92.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds