Wall clock time and date at job start Tue Mar 31 2020 14:04:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.35705 * 119.43891 * 2 1 4 4 C 1.35263 * 120.99871 * 180.02562 * 3 2 1 5 5 C 1.41149 * 119.86914 * 359.97438 * 4 3 2 6 6 C 1.48459 * 120.54057 * 179.97438 * 5 4 3 7 7 O 1.21473 * 120.00355 * 180.02562 * 6 5 4 8 8 N 1.34777 * 119.99714 * 359.72413 * 6 5 4 9 9 C 1.46499 * 120.00199 * 180.27247 * 8 6 5 10 10 H 1.08999 * 109.46845 * 325.00503 * 9 8 6 11 11 C 1.52995 * 109.47455 * 205.00257 * 9 8 6 12 12 C 1.50702 * 109.47148 * 65.00169 * 11 9 8 13 13 H 1.08003 * 119.99859 * 359.97438 * 12 11 9 14 14 C 1.37876 * 120.00235 * 180.02562 * 12 11 9 15 15 N 1.31520 * 119.99919 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 120.00030 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47010 * 89.99957 * 16 14 12 18 18 H 1.48504 * 109.46879 * 209.99774 * 16 14 12 19 19 H 1.48494 * 109.46990 * 329.99503 * 16 14 12 20 20 C 1.50697 * 109.46928 * 85.00210 * 9 8 6 21 21 C 1.38241 * 120.00139 * 39.73030 * 20 9 8 22 22 C 1.38232 * 119.99894 * 179.80941 * 21 20 9 23 23 C 1.38228 * 120.00347 * 0.39764 * 22 21 20 24 24 C 1.38240 * 120.00002 * 359.85598 * 23 22 21 25 25 C 1.38235 * 119.99796 * 359.95518 * 24 23 22 26 26 C 1.38299 * 118.92482 * 0.25278 * 5 4 3 27 27 C 1.34591 * 119.44100 * 180.02562 * 2 1 3 28 28 O 1.22008 * 119.96193 * 359.97438 * 27 2 1 29 29 H 1.08997 * 109.47176 * 89.99395 * 1 2 3 30 30 H 1.08996 * 109.46819 * 210.00128 * 1 2 3 31 31 H 1.09000 * 109.46814 * 329.99823 * 1 2 3 32 32 H 1.07996 * 119.50307 * 0.02562 * 3 2 1 33 33 H 1.07999 * 120.06487 * 179.97438 * 4 3 2 34 34 H 0.97001 * 119.99727 * 0.28144 * 8 6 5 35 35 H 1.09000 * 109.47218 * 184.99988 * 11 9 8 36 36 H 1.09000 * 109.47293 * 305.00154 * 11 9 8 37 37 H 0.96998 * 120.00002 * 180.02562 * 15 14 12 38 38 H 1.08007 * 119.99366 * 359.97438 * 21 20 9 39 39 H 1.08001 * 119.99603 * 180.22464 * 22 21 20 40 40 H 1.08001 * 120.00147 * 179.83269 * 23 22 21 41 41 H 1.07996 * 120.00270 * 179.97438 * 24 23 22 42 42 H 1.08000 * 120.00227 * 180.02562 * 25 24 23 43 43 H 1.07996 * 120.49451 * 179.72728 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1320 1.1818 0.0000 4 6 3.4842 1.2187 -0.0005 5 6 4.2202 0.0142 -0.0005 6 6 5.7046 0.0373 -0.0017 7 8 6.3283 -1.0051 -0.0021 8 7 6.3602 1.2148 -0.0083 9 6 7.8250 1.2376 -0.0155 10 1 8.2042 0.4032 0.5745 11 6 8.3176 2.5544 0.5879 12 6 7.9250 2.6189 2.0415 13 1 7.3785 1.8024 2.4899 14 6 8.2627 3.7206 2.7986 15 7 8.9278 4.7151 2.2524 16 14 7.7767 3.8001 4.6005 17 1 8.8562 3.2083 5.4309 18 1 7.5688 5.2166 4.9951 19 1 6.5187 3.0388 4.8079 20 6 8.3223 1.1175 -1.4330 21 6 7.6692 1.7832 -2.4534 22 6 8.1277 1.6761 -3.7530 23 6 9.2344 0.8968 -4.0336 24 6 9.8844 0.2269 -3.0139 25 6 9.4282 0.3370 -1.7137 26 6 3.5361 -1.1877 -0.0053 27 6 2.1266 -1.1721 -0.0005 28 8 1.5056 -2.2223 -0.0005 29 1 -0.3633 0.0001 -1.0276 30 1 -0.3633 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 1.5749 2.1070 0.0004 33 1 3.9996 2.1677 -0.0009 34 1 5.8622 2.0472 -0.0082 35 1 9.4028 2.6101 0.5018 36 1 7.8673 3.3903 0.0525 37 1 9.1657 5.4900 2.7851 38 1 6.8022 2.3891 -2.2347 39 1 7.6196 2.1992 -4.5497 40 1 9.5910 0.8110 -5.0494 41 1 10.7488 -0.3824 -3.2331 42 1 9.9362 -0.1860 -0.9170 43 1 4.0738 -2.1243 -0.0099 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153700254.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:00 Heat of formation + Delta-G solvation = -34.302435 kcal Electronic energy + Delta-G solvation = -26931.046782 eV Core-core repulsion = 23133.610502 eV Total energy + Delta-G solvation = -3797.436280 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.43853 -41.08239 -39.76443 -38.03763 -36.89636 -35.57130 -34.71895 -32.59272 -31.68855 -30.96772 -30.55554 -28.86600 -26.83936 -25.23095 -24.41253 -23.78650 -23.34601 -21.89264 -21.25826 -19.22198 -18.67044 -18.44612 -17.90407 -17.60611 -17.14114 -16.92748 -16.80042 -16.41360 -16.25871 -15.59053 -15.52854 -15.20666 -14.82360 -14.46137 -14.24525 -14.17654 -14.13015 -14.07218 -13.67734 -13.47847 -13.40911 -12.95500 -12.84858 -12.74330 -12.64419 -12.44329 -12.14012 -11.87361 -11.59689 -11.57463 -11.31620 -11.11651 -10.96943 -10.55940 -10.07125 -9.74412 -9.52010 -9.07912 -8.17863 -6.27789 -0.64541 0.51359 0.57287 0.63796 1.41248 1.44591 1.53401 1.61713 1.76218 2.09788 2.42183 2.64862 2.97498 3.16563 3.53805 3.67154 3.72372 3.98210 4.03746 4.08494 4.15945 4.22154 4.33515 4.40622 4.46685 4.48817 4.65438 4.71859 4.76794 4.79821 4.82950 4.93692 5.12527 5.14455 5.20659 5.23886 5.44277 5.45034 5.58713 5.62100 5.65501 5.80042 5.88632 5.92847 6.17391 6.21877 6.56831 6.81648 6.84659 7.17167 7.41381 8.92604 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.007781 B = 0.004669 C = 0.003241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3597.612889 B = 5995.752754 C = 8637.448005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.051 3.949 2 N -0.488 5.488 3 C 0.165 3.835 4 C -0.226 4.226 5 C -0.014 4.014 6 C 0.544 3.456 7 O -0.576 6.576 8 N -0.677 5.677 9 C 0.198 3.802 10 H 0.059 0.941 11 C 0.039 3.961 12 C -0.530 4.530 13 H 0.053 0.947 14 C 0.016 3.984 15 N -0.923 5.923 16 Si 0.952 3.048 17 H -0.284 1.284 18 H -0.279 1.279 19 H -0.265 1.265 20 C -0.099 4.099 21 C -0.120 4.120 22 C -0.124 4.124 23 C -0.130 4.130 24 C -0.125 4.125 25 C -0.134 4.134 26 C -0.215 4.215 27 C 0.506 3.494 28 O -0.594 6.594 29 H 0.093 0.907 30 H 0.075 0.925 31 H 0.132 0.868 32 H 0.232 0.768 33 H 0.175 0.825 34 H 0.413 0.587 35 H 0.005 0.995 36 H 0.020 0.980 37 H 0.264 0.736 38 H 0.127 0.873 39 H 0.148 0.852 40 H 0.150 0.850 41 H 0.142 0.858 42 H 0.112 0.888 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.101 -0.017 -10.324 17.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 N -0.197 5.197 3 C 0.038 3.962 4 C -0.248 4.248 5 C -0.021 4.021 6 C 0.331 3.669 7 O -0.456 6.456 8 N -0.327 5.327 9 C 0.093 3.907 10 H 0.077 0.923 11 C 0.001 3.999 12 C -0.568 4.568 13 H 0.071 0.929 14 C -0.183 4.183 15 N -0.563 5.563 16 Si 0.778 3.222 17 H -0.210 1.210 18 H -0.205 1.205 19 H -0.190 1.190 20 C -0.101 4.101 21 C -0.138 4.138 22 C -0.142 4.142 23 C -0.148 4.148 24 C -0.143 4.143 25 C -0.153 4.153 26 C -0.238 4.238 27 C 0.309 3.691 28 O -0.481 6.481 29 H 0.111 0.889 30 H 0.094 0.906 31 H 0.151 0.849 32 H 0.248 0.752 33 H 0.192 0.808 34 H 0.252 0.748 35 H 0.023 0.977 36 H 0.038 0.962 37 H 0.073 0.927 38 H 0.145 0.855 39 H 0.166 0.834 40 H 0.168 0.832 41 H 0.159 0.841 42 H 0.130 0.870 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -14.031 -1.200 -10.273 17.431 hybrid contribution 0.408 0.130 1.332 1.399 sum -13.623 -1.070 -8.941 16.330 Atomic orbital electron populations 1.22538 0.74448 1.06442 1.05473 1.45541 1.11142 1.06277 1.56714 1.22741 0.93003 0.90241 0.90206 1.21037 0.93726 0.97938 1.12109 1.20506 0.92176 0.95221 0.94229 1.18782 0.87866 0.83807 0.76431 1.90719 1.69629 1.33726 1.51533 1.45730 1.07027 1.08197 1.71724 1.19822 0.79229 1.00010 0.91595 0.92317 1.19140 0.95569 0.90380 0.94792 1.21380 1.36140 1.03291 0.95948 0.92908 1.25693 0.94971 0.95354 1.02253 1.70059 1.40093 1.08268 1.37898 0.85651 0.78795 0.77359 0.80441 1.20975 1.20471 1.18958 1.20414 0.96532 0.97424 0.95685 1.21115 1.00328 0.99392 0.92957 1.21455 0.97190 0.99158 0.96387 1.21478 0.96024 0.97187 1.00080 1.21380 1.00625 1.00163 0.92164 1.21183 0.97045 0.99172 0.97881 1.22448 0.92924 0.99241 1.09228 1.16928 0.88475 0.83704 0.79989 1.90908 1.69945 1.31497 1.55735 0.88877 0.90632 0.84948 0.75164 0.80818 0.74834 0.97685 0.96191 0.92706 0.85459 0.83398 0.83230 0.84060 0.87038 0.84880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.50 10.34 127.77 1.32 1.82 16 2 N -0.49 -8.62 2.98 -674.33 -2.01 -10.63 16 3 C 0.17 1.94 10.25 83.41 0.86 2.79 16 4 C -0.23 -4.16 9.51 22.30 0.21 -3.95 16 5 C -0.01 -0.41 5.91 -19.82 -0.12 -0.52 16 6 C 0.54 19.91 7.76 86.97 0.67 20.58 16 7 O -0.58 -25.85 16.06 -3.63 -0.06 -25.91 16 8 N -0.68 -23.68 3.98 -448.41 -1.78 -25.46 16 9 C 0.20 8.15 2.12 44.24 0.09 8.25 16 10 H 0.06 2.74 7.44 -2.39 -0.02 2.73 16 11 C 0.04 1.84 4.50 29.85 0.13 1.98 16 12 C -0.53 -27.50 8.84 25.60 0.23 -27.27 16 13 H 0.05 2.76 7.74 -2.91 -0.02 2.73 16 14 C 0.02 0.87 5.46 84.65 0.46 1.33 16 15 N -0.92 -51.75 13.29 21.45 0.28 -51.46 16 16 Si 0.95 41.80 29.54 68.60 2.03 43.82 16 17 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 18 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 19 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 20 C -0.10 -3.69 4.91 -19.86 -0.10 -3.79 16 21 C -0.12 -3.77 9.33 22.27 0.21 -3.57 16 22 C -0.12 -3.25 10.05 22.27 0.22 -3.03 16 23 C -0.13 -3.26 10.05 22.27 0.22 -3.04 16 24 C -0.13 -3.59 10.05 22.27 0.22 -3.37 16 25 C -0.13 -4.75 9.67 22.27 0.22 -4.53 16 26 C -0.21 -6.87 9.61 22.95 0.22 -6.65 16 27 C 0.51 14.75 7.42 84.94 0.63 15.38 16 28 O -0.59 -21.48 16.62 -5.34 -0.09 -21.57 16 29 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.07 1.10 7.37 -2.39 -0.02 1.08 16 31 H 0.13 0.13 8.00 -2.39 -0.02 0.11 16 32 H 0.23 -0.12 8.02 -2.91 -0.02 -0.14 16 33 H 0.17 2.46 6.50 -2.91 -0.02 2.44 16 34 H 0.41 12.21 6.71 -92.71 -0.62 11.59 16 35 H 0.00 0.26 8.14 -2.39 -0.02 0.24 16 36 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.26 14.03 8.31 -92.71 -0.77 13.26 16 38 H 0.13 3.58 7.71 -2.91 -0.02 3.56 16 39 H 0.15 2.86 8.06 -2.91 -0.02 2.83 16 40 H 0.15 2.68 8.06 -2.91 -0.02 2.66 16 41 H 0.14 3.22 8.06 -2.91 -0.02 3.19 16 42 H 0.11 3.97 8.04 -2.91 -0.02 3.94 16 43 H 0.13 4.85 7.69 -2.91 -0.02 4.83 16 Total: -1.00 -80.19 371.65 4.49 -75.70 By element: Atomic # 1 Polarization: 22.71 SS G_CDS: 0.41 Total: 23.12 kcal Atomic # 6 Polarization: -13.31 SS G_CDS: 5.71 Total: -7.60 kcal Atomic # 7 Polarization: -84.05 SS G_CDS: -3.51 Total: -87.56 kcal Atomic # 8 Polarization: -47.33 SS G_CDS: -0.15 Total: -47.48 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 2.03 Total: 43.82 kcal Total: -80.19 4.49 -75.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153700254.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.394 kcal (2) G-P(sol) polarization free energy of solvation -80.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds