Wall clock time and date at job start Tue Mar 31 2020 14:21:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 O 1.41596 * 119.99895 * 2 1 4 4 C 1.42908 * 113.99932 * 270.00297 * 3 2 1 5 5 C 1.50703 * 109.46916 * 180.02562 * 4 3 2 6 6 C 1.38235 * 119.99953 * 269.72356 * 5 4 3 7 7 C 1.38233 * 119.99838 * 179.76797 * 6 5 4 8 8 C 1.38247 * 119.99946 * 0.50578 * 7 6 5 9 9 C 1.38230 * 119.99573 * 359.74862 * 8 7 6 10 10 C 1.38233 * 119.99743 * 90.00139 * 5 4 3 11 11 C 1.34777 * 120.00028 * 180.02562 * 2 1 3 12 12 O 1.21578 * 120.00028 * 359.97438 * 11 2 1 13 13 N 1.34775 * 120.00024 * 179.97438 * 11 2 1 14 14 C 1.39237 * 119.99892 * 184.28696 * 13 11 2 15 15 C 1.39481 * 119.83897 * 324.70059 * 14 13 11 16 16 C 1.36372 * 120.17103 * 180.25482 * 15 14 13 17 17 C 1.40869 * 119.82903 * 359.49611 * 16 15 14 18 18 C 1.41159 * 120.16494 * 180.23178 * 17 16 15 19 19 H 1.07996 * 119.99761 * 215.03868 * 18 17 16 20 20 C 1.39887 * 120.00070 * 35.03066 * 18 17 16 21 21 N 1.30880 * 119.99889 * 355.56309 * 20 18 17 22 22 Si 1.86799 * 120.00328 * 175.55844 * 20 18 17 23 23 H 1.48506 * 109.46960 * 60.00077 * 22 20 18 24 24 H 1.48499 * 109.47355 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.46721 * 300.00632 * 22 20 18 26 26 C 1.40864 * 119.67224 * 0.52629 * 17 16 15 27 27 C 1.36379 * 119.82691 * 359.72792 * 26 17 16 28 28 H 1.09000 * 109.46789 * 269.99513 * 1 2 3 29 29 H 1.09003 * 109.47379 * 29.99806 * 1 2 3 30 30 H 1.08999 * 109.47298 * 150.00139 * 1 2 3 31 31 H 1.09002 * 109.47061 * 299.99641 * 4 3 2 32 32 H 1.08999 * 109.47235 * 60.00345 * 4 3 2 33 33 H 1.07996 * 119.99805 * 0.02562 * 6 5 4 34 34 H 1.07998 * 119.99954 * 180.23442 * 7 6 5 35 35 H 1.07999 * 119.99571 * 179.72486 * 8 7 6 36 36 H 1.08006 * 119.99778 * 179.97438 * 9 8 7 37 37 H 1.07999 * 120.00633 * 0.02562 * 10 5 4 38 38 H 0.96998 * 120.00115 * 4.29060 * 13 11 2 39 39 H 1.08003 * 119.91073 * 359.97438 * 15 14 13 40 40 H 1.08001 * 120.08216 * 179.74680 * 16 15 14 41 41 H 0.97002 * 120.00226 * 179.97438 * 21 20 18 42 42 H 1.07994 * 120.09007 * 179.70634 * 26 17 16 43 43 H 1.08005 * 119.91406 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 8 2.1730 1.2263 0.0000 4 6 2.4635 1.7297 -1.3055 5 6 3.2152 3.0304 -1.1865 6 6 2.5237 4.2263 -1.1374 7 6 3.2130 5.4191 -1.0234 8 6 4.5944 5.4167 -0.9690 9 6 5.2860 4.2211 -1.0234 10 6 4.5965 3.0279 -1.1322 11 6 2.1389 -1.1672 -0.0005 12 8 1.5310 -2.2201 -0.0005 13 7 3.4867 -1.1672 -0.0010 14 6 4.1828 -2.3696 -0.0917 15 6 3.6749 -3.5137 0.5236 16 6 4.3537 -4.6938 0.4435 17 6 5.5655 -4.7579 -0.2720 18 6 6.2715 -5.9768 -0.3636 19 1 7.3514 -5.9759 -0.3723 20 6 5.5723 -7.1858 -0.4428 21 7 4.2672 -7.1946 -0.3447 22 14 6.5013 -8.7876 -0.6888 23 1 7.4438 -8.9917 0.4405 24 1 5.5373 -9.9161 -0.7397 25 1 7.2612 -8.7284 -1.9632 26 6 6.0724 -3.5981 -0.8903 27 6 5.3849 -2.4240 -0.7970 28 1 -0.3633 -0.0001 1.0277 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3634 -0.8900 -0.5138 31 1 3.0735 1.0062 -1.8465 32 1 1.5320 1.8962 -1.8464 33 1 1.4447 4.2285 -1.1839 34 1 2.6725 6.3532 -0.9812 35 1 5.1330 6.3489 -0.8844 36 1 6.3652 4.2192 -0.9814 37 1 5.1370 2.0940 -1.1755 38 1 3.9717 -0.3295 0.0618 39 1 2.7438 -3.4638 1.0687 40 1 3.9611 -5.5778 0.9239 41 1 3.7823 -8.0329 -0.4000 42 1 7.0032 -3.6385 -1.4364 43 1 5.7725 -1.5338 -1.2702 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000154279939.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:21:38 Heat of formation + Delta-G solvation = 35.531542 kcal Electronic energy + Delta-G solvation = -26371.525042 eV Core-core repulsion = 22577.116991 eV Total energy + Delta-G solvation = -3794.408051 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.12302 -39.51403 -37.78624 -36.96860 -34.54286 -33.41308 -32.83623 -31.50131 -31.20760 -29.48618 -29.04545 -26.94547 -26.07625 -24.38732 -22.89505 -21.67951 -21.43066 -20.97387 -20.03541 -18.43839 -17.29703 -17.26517 -17.13291 -16.07902 -15.83264 -15.41467 -15.21060 -15.19253 -14.55017 -14.16778 -13.91602 -13.89023 -13.61250 -13.36060 -13.27281 -12.85494 -12.74833 -12.60404 -12.31141 -12.07048 -11.72320 -11.44230 -11.40456 -11.36032 -11.12382 -10.93995 -10.66951 -10.46942 -9.99024 -9.87493 -9.60637 -9.30417 -9.21950 -9.06052 -8.84475 -8.71537 -7.49011 -6.84205 -6.55659 -4.29540 0.87665 1.10490 1.91243 2.69384 3.07421 3.12414 3.14006 3.17175 3.40956 3.58936 3.76663 4.01736 4.45052 4.49511 4.68571 4.76121 4.82450 4.88667 4.94387 5.15880 5.21481 5.31021 5.34455 5.46618 5.64422 5.68946 5.73135 5.73662 6.12922 6.14706 6.20464 6.26096 6.38678 6.47668 6.66404 6.79215 6.85167 7.07520 7.17043 7.30009 7.37742 7.68068 7.81803 8.02237 8.12666 8.31167 8.42233 8.70754 8.88207 8.97114 9.06806 10.35460 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.019600 B = 0.002573 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.201319 B =10879.674189 C =12130.916348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.502 5.502 3 O -0.140 6.140 4 C 0.064 3.936 5 C -0.089 4.089 6 C -0.097 4.097 7 C -0.125 4.125 8 C -0.113 4.113 9 C -0.121 4.121 10 C -0.095 4.095 11 C 0.704 3.296 12 O -0.555 6.555 13 N -0.659 5.659 14 C 0.020 3.980 15 C -0.094 4.094 16 C -0.142 4.142 17 C 0.100 3.900 18 C -0.464 4.464 19 H 0.075 0.925 20 C 0.069 3.931 21 N -0.809 5.809 22 Si 0.915 3.085 23 H -0.266 1.266 24 H -0.280 1.280 25 H -0.267 1.267 26 C -0.203 4.203 27 C -0.114 4.114 28 H 0.061 0.939 29 H 0.070 0.930 30 H 0.088 0.912 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.123 0.877 34 H 0.124 0.876 35 H 0.123 0.877 36 H 0.126 0.874 37 H 0.127 0.873 38 H 0.396 0.604 39 H 0.109 0.891 40 H 0.131 0.869 41 H 0.278 0.722 42 H 0.097 0.903 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.739 21.466 -1.858 21.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 N -0.286 5.286 3 O -0.145 6.145 4 C -0.014 4.014 5 C -0.090 4.090 6 C -0.115 4.115 7 C -0.143 4.143 8 C -0.131 4.131 9 C -0.139 4.139 10 C -0.113 4.113 11 C 0.407 3.593 12 O -0.431 6.431 13 N -0.304 5.304 14 C -0.072 4.072 15 C -0.114 4.114 16 C -0.162 4.162 17 C 0.097 3.903 18 C -0.495 4.495 19 H 0.093 0.907 20 C -0.146 4.146 21 N -0.435 5.435 22 Si 0.740 3.260 23 H -0.191 1.191 24 H -0.205 1.205 25 H -0.192 1.192 26 C -0.223 4.223 27 C -0.134 4.134 28 H 0.079 0.921 29 H 0.089 0.911 30 H 0.107 0.893 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.141 0.859 34 H 0.142 0.858 35 H 0.141 0.859 36 H 0.144 0.856 37 H 0.145 0.855 38 H 0.230 0.770 39 H 0.127 0.873 40 H 0.148 0.852 41 H 0.089 0.911 42 H 0.115 0.885 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -4.372 20.581 -1.689 21.108 hybrid contribution 0.564 -0.059 -0.520 0.770 sum -3.809 20.521 -2.210 20.988 Atomic orbital electron populations 1.21708 0.75763 1.03255 1.02605 1.49305 1.03865 0.94919 1.80461 1.90722 1.73077 1.26013 1.24709 1.21927 0.99196 0.93023 0.87256 1.19450 0.93702 0.93229 1.02621 1.21067 0.99940 0.91892 0.98636 1.21148 0.94491 0.97939 1.00685 1.21241 0.94456 0.98206 0.99184 1.21196 1.00244 0.92337 1.00137 1.21173 0.93450 0.98788 0.97916 1.15945 0.82762 0.81996 0.78637 1.90990 1.67535 1.26862 1.57664 1.42117 1.03720 1.09234 1.75346 1.17119 0.96007 0.85111 1.08966 1.20672 0.99160 0.92469 0.99114 1.21303 0.97414 0.96380 1.01127 1.17715 0.92197 0.91940 0.88449 1.19428 0.94413 0.90385 1.45235 0.90715 1.25882 0.94932 1.00853 0.92957 1.69784 1.07363 1.28665 1.37733 0.86265 0.79756 0.80234 0.79735 1.19088 1.20461 1.19183 1.20667 1.01879 0.93547 1.06194 1.20025 0.95862 0.97347 1.00207 0.92074 0.91090 0.89337 0.91230 0.91432 0.85875 0.85846 0.85925 0.85611 0.85491 0.77021 0.87331 0.85173 0.91055 0.88522 0.89313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.26 10.82 59.85 0.65 1.90 16 2 N -0.50 -7.51 3.36 -72.07 -0.24 -7.75 16 3 O -0.14 -1.85 10.16 -11.47 -0.12 -1.96 16 4 C 0.06 0.69 6.50 36.01 0.23 0.93 16 5 C -0.09 -0.89 5.51 -104.62 -0.58 -1.47 16 6 C -0.10 -0.85 9.70 -39.58 -0.38 -1.23 16 7 C -0.12 -0.97 10.05 -39.58 -0.40 -1.37 16 8 C -0.11 -0.87 10.05 -39.58 -0.40 -1.27 16 9 C -0.12 -1.03 10.05 -39.58 -0.40 -1.43 16 10 C -0.10 -0.93 9.70 -39.58 -0.38 -1.31 16 11 C 0.70 13.51 8.24 -86.92 -0.72 12.80 16 12 O -0.55 -12.69 13.34 5.30 0.07 -12.62 16 13 N -0.66 -12.51 5.27 -14.10 -0.07 -12.59 16 14 C 0.02 0.47 6.31 -83.57 -0.53 -0.06 16 15 C -0.09 -2.39 8.61 -39.79 -0.34 -2.73 16 16 C -0.14 -3.86 8.61 -39.26 -0.34 -4.20 16 17 C 0.10 2.69 5.55 -106.80 -0.59 2.10 16 18 C -0.46 -12.46 9.02 -37.86 -0.34 -12.80 16 19 H 0.07 1.91 7.85 -52.49 -0.41 1.49 16 20 C 0.07 1.78 5.42 -17.34 -0.09 1.69 16 21 N -0.81 -21.76 10.61 55.54 0.59 -21.17 16 22 Si 0.92 19.28 29.56 -169.99 -5.03 14.26 16 23 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 24 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 25 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 26 C -0.20 -4.92 9.74 -39.26 -0.38 -5.31 16 27 C -0.11 -2.51 9.90 -39.79 -0.39 -2.91 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.09 1.11 7.42 -51.93 -0.39 0.72 16 31 H 0.07 0.81 8.08 -51.93 -0.42 0.39 16 32 H 0.07 0.64 8.08 -51.93 -0.42 0.22 16 33 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 34 H 0.12 0.69 8.06 -52.49 -0.42 0.26 16 35 H 0.12 0.68 8.06 -52.49 -0.42 0.25 16 36 H 0.13 0.84 8.06 -52.48 -0.42 0.42 16 37 H 0.13 1.17 8.06 -52.49 -0.42 0.74 16 38 H 0.40 6.39 7.95 -40.82 -0.32 6.07 16 39 H 0.11 2.79 6.22 -52.48 -0.33 2.46 16 40 H 0.13 3.69 6.15 -52.49 -0.32 3.37 16 41 H 0.28 6.91 8.30 -40.82 -0.34 6.57 16 42 H 0.10 2.17 8.06 -52.49 -0.42 1.75 16 43 H 0.09 1.65 8.06 -52.48 -0.42 1.23 16 LS Contribution 370.14 15.07 5.58 5.58 Total: -1.00 -31.57 370.14 -10.15 -41.72 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: -5.55 Total: 11.21 kcal Atomic # 6 Polarization: -11.28 SS G_CDS: -5.38 Total: -16.67 kcal Atomic # 7 Polarization: -41.79 SS G_CDS: 0.27 Total: -41.51 kcal Atomic # 8 Polarization: -14.53 SS G_CDS: -0.05 Total: -14.58 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -5.03 Total: 14.26 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.57 -10.15 -41.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154279939.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.251 kcal (2) G-P(sol) polarization free energy of solvation -31.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds