Wall clock time and date at job start Tue Mar 31 2020 14:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 N 1.41597 * 114.00017 * 2 1 4 4 C 1.46504 * 120.00243 * 269.99948 * 3 2 1 5 5 C 1.50701 * 109.47306 * 255.00221 * 4 3 2 6 6 C 1.38232 * 119.99678 * 269.72695 * 5 4 3 7 7 C 1.38243 * 119.99587 * 179.76741 * 6 5 4 8 8 C 1.38227 * 119.99791 * 0.50018 * 7 6 5 9 9 C 1.38232 * 120.00410 * 359.75530 * 8 7 6 10 10 C 1.38231 * 119.99863 * 359.97438 * 9 8 7 11 11 C 1.34783 * 120.00258 * 89.99951 * 3 2 1 12 12 O 1.21572 * 120.00019 * 179.97438 * 11 3 2 13 13 N 1.34777 * 119.99551 * 0.02562 * 11 3 2 14 14 C 1.39245 * 119.99688 * 185.15107 * 13 11 3 15 15 C 1.39476 * 119.83197 * 34.38778 * 14 13 11 16 16 C 1.36379 * 120.16811 * 180.24899 * 15 14 13 17 17 C 1.40865 * 119.82557 * 359.50421 * 16 15 14 18 18 C 1.41157 * 120.16398 * 180.22764 * 17 16 15 19 19 H 1.07998 * 120.00467 * 205.50035 * 18 17 16 20 20 C 1.39895 * 119.99954 * 25.50061 * 18 17 16 21 21 N 1.30879 * 119.99808 * 16.70900 * 20 18 17 22 22 Si 1.86793 * 120.00136 * 196.71443 * 20 18 17 23 23 H 1.48500 * 109.47159 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47531 * 119.99439 * 22 20 18 25 25 H 1.48500 * 109.47307 * 239.99782 * 22 20 18 26 26 C 1.40873 * 119.67259 * 0.51095 * 17 16 15 27 27 C 1.36370 * 119.82684 * 359.74031 * 26 17 16 28 28 H 1.09000 * 109.47169 * 59.99787 * 1 2 3 29 29 H 1.08997 * 109.46703 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46791 * 299.99809 * 1 2 3 31 31 H 1.09008 * 109.46476 * 15.00088 * 4 3 2 32 32 H 1.08991 * 109.47288 * 134.99815 * 4 3 2 33 33 H 1.08001 * 120.00352 * 359.97438 * 6 5 4 34 34 H 1.08004 * 119.99738 * 180.22956 * 7 6 5 35 35 H 1.08007 * 119.99674 * 179.72600 * 8 7 6 36 36 H 1.08001 * 120.00221 * 179.97438 * 9 8 7 37 37 H 1.08004 * 119.99933 * 179.97438 * 10 9 8 38 38 H 0.96998 * 119.99985 * 5.14946 * 13 11 3 39 39 H 1.08005 * 119.91866 * 359.97303 * 15 14 13 40 40 H 1.07993 * 120.08306 * 179.73810 * 16 15 14 41 41 H 0.97000 * 119.99937 * 180.02562 * 21 20 18 42 42 H 1.08001 * 120.08499 * 179.71647 * 26 17 16 43 43 H 1.08000 * 119.91566 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0049 1.2935 0.0000 4 6 2.3029 1.9628 -1.2687 5 6 3.7884 1.9249 -1.5199 6 6 4.5931 2.9513 -1.0618 7 6 5.9564 2.9142 -1.2881 8 6 6.5133 1.8559 -1.9814 9 6 5.7079 0.8323 -2.4441 10 6 4.3454 0.8665 -2.2130 11 6 2.2791 1.9092 1.1672 12 8 2.7740 3.0197 1.1672 13 7 2.0054 1.2934 2.3344 14 6 2.1880 1.9696 3.5379 15 6 1.9451 3.3413 3.6068 16 6 2.1265 4.0114 4.7807 17 6 2.5503 3.3125 5.9280 18 6 2.7358 3.9981 7.1479 19 1 3.4199 3.6090 7.8875 20 6 2.0334 5.1816 7.3989 21 7 0.9831 5.4844 6.6791 22 14 2.5945 6.3296 8.7614 23 1 3.7974 5.7627 9.4224 24 1 2.9255 7.6575 8.1849 25 1 1.5064 6.4811 9.7606 26 6 2.7939 1.9272 5.8504 27 6 2.6130 1.2718 4.6683 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.7841 1.4515 -2.0797 32 1 1.9689 2.9991 -1.2201 33 1 4.1573 3.7804 -0.5242 34 1 6.5857 3.7142 -0.9269 35 1 7.5778 1.8292 -2.1620 36 1 6.1430 0.0057 -2.9861 37 1 3.7160 0.0669 -2.5749 38 1 1.6813 0.3791 2.3360 39 1 1.6168 3.8751 2.7271 40 1 1.9421 5.0742 4.8314 41 1 0.4963 6.3052 6.8529 42 1 3.1235 1.3856 6.7248 43 1 2.7998 0.2099 4.6071 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000154283557.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:50 Heat of formation + Delta-G solvation = 33.804494 kcal Electronic energy + Delta-G solvation = -26932.658579 eV Core-core repulsion = 23138.175638 eV Total energy + Delta-G solvation = -3794.482942 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.20284 -38.98791 -37.75044 -36.93180 -34.65131 -33.57692 -32.88828 -30.84707 -30.78525 -29.46129 -28.88233 -26.99814 -26.07627 -24.45473 -22.51846 -21.90038 -21.27982 -20.73832 -19.89170 -18.36752 -17.40032 -17.26670 -16.67352 -16.03639 -15.62649 -15.16878 -15.03345 -14.94594 -14.61970 -14.32885 -14.23613 -13.90178 -13.34598 -13.28350 -12.92829 -12.67790 -12.63226 -12.42138 -12.04171 -11.96859 -11.80223 -11.38214 -11.22607 -11.12499 -11.05051 -10.91804 -10.70009 -10.65151 -9.96733 -9.69701 -9.53107 -9.15801 -8.96221 -8.90104 -8.80405 -8.68106 -7.49469 -6.94997 -6.70153 -4.26708 1.18887 1.49676 2.06261 2.70000 3.08395 3.09559 3.14875 3.15923 3.50778 3.81277 3.90110 3.95914 4.66829 4.76838 4.81311 4.96644 5.04130 5.09135 5.13180 5.14478 5.27014 5.44052 5.47226 5.62379 5.70507 5.74045 6.01523 6.14155 6.19661 6.38472 6.48258 6.49154 6.60199 6.66566 6.83273 6.84495 7.06294 7.07723 7.12840 7.31064 7.34642 7.64022 7.84981 8.00457 8.08596 8.28590 8.45184 8.65765 8.90027 8.91833 9.07604 10.21489 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.015758 B = 0.003019 C = 0.002743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.452911 B = 9273.876918 C =10205.529305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.009 4.009 2 O -0.151 6.151 3 N -0.495 5.495 4 C 0.182 3.818 5 C -0.111 4.111 6 C -0.078 4.078 7 C -0.128 4.128 8 C -0.116 4.116 9 C -0.134 4.134 10 C -0.099 4.099 11 C 0.706 3.294 12 O -0.554 6.554 13 N -0.658 5.658 14 C 0.013 3.987 15 C -0.087 4.087 16 C -0.152 4.152 17 C 0.105 3.895 18 C -0.459 4.459 19 H 0.078 0.922 20 C 0.074 3.926 21 N -0.793 5.793 22 Si 0.908 3.092 23 H -0.261 1.261 24 H -0.272 1.272 25 H -0.275 1.275 26 C -0.213 4.213 27 C -0.105 4.105 28 H 0.051 0.949 29 H 0.103 0.897 30 H 0.055 0.945 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.137 0.863 34 H 0.121 0.879 35 H 0.118 0.882 36 H 0.118 0.882 37 H 0.118 0.882 38 H 0.395 0.605 39 H 0.101 0.899 40 H 0.120 0.880 41 H 0.279 0.721 42 H 0.096 0.904 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.954 -7.746 -16.573 18.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 O -0.154 6.154 3 N -0.280 5.280 4 C 0.061 3.939 5 C -0.113 4.113 6 C -0.096 4.096 7 C -0.146 4.146 8 C -0.134 4.134 9 C -0.152 4.152 10 C -0.117 4.117 11 C 0.410 3.590 12 O -0.430 6.430 13 N -0.303 5.303 14 C -0.080 4.080 15 C -0.107 4.107 16 C -0.172 4.172 17 C 0.102 3.898 18 C -0.488 4.488 19 H 0.096 0.904 20 C -0.143 4.143 21 N -0.419 5.419 22 Si 0.732 3.268 23 H -0.184 1.184 24 H -0.197 1.197 25 H -0.201 1.201 26 C -0.233 4.233 27 C -0.126 4.126 28 H 0.070 0.930 29 H 0.121 0.879 30 H 0.074 0.926 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.154 0.846 34 H 0.139 0.861 35 H 0.136 0.864 36 H 0.136 0.864 37 H 0.137 0.863 38 H 0.229 0.771 39 H 0.119 0.881 40 H 0.138 0.862 41 H 0.090 0.910 42 H 0.114 0.886 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 1.201 -6.919 -16.583 18.009 hybrid contribution -0.331 -0.118 0.606 0.701 sum 0.870 -7.036 -15.977 17.480 Atomic orbital electron populations 1.23395 0.82149 1.03542 1.01629 1.90606 1.19744 1.08369 1.96705 1.49555 1.62792 1.10416 1.05220 1.20353 0.91852 0.97861 0.83811 1.20099 0.95915 0.95623 0.99635 1.21392 0.93441 0.98724 0.96063 1.21212 0.95348 0.98778 0.99245 1.21167 0.99564 0.94497 0.98178 1.21052 0.93811 0.98905 1.01390 1.21002 0.95119 0.97242 0.98380 1.15905 0.79486 0.83978 0.79662 1.90925 1.49664 1.18361 1.84088 1.42127 1.67944 1.16701 1.03569 1.16993 1.14546 0.92652 0.83801 1.20401 1.00299 0.92436 0.97572 1.20968 1.05320 0.99888 0.91039 1.17658 0.88776 0.90496 0.92884 1.19564 1.21913 1.05599 1.01743 0.90412 1.25911 0.93339 0.97889 0.97169 1.69853 1.12731 1.22945 1.36373 0.86275 0.79793 0.80078 0.80649 1.18417 1.19717 1.20068 1.20530 1.12117 0.94537 0.96157 1.20009 1.01870 0.97441 0.93239 0.92985 0.87858 0.92631 0.89051 0.89112 0.84553 0.86091 0.86411 0.86386 0.86349 0.77109 0.88119 0.86237 0.90971 0.88632 0.89247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.08 11.45 101.05 1.16 1.07 16 2 O -0.15 -1.90 10.54 -11.47 -0.12 -2.02 16 3 N -0.49 -7.26 3.01 -66.41 -0.20 -7.46 16 4 C 0.18 2.24 5.85 -5.19 -0.03 2.21 16 5 C -0.11 -1.48 5.25 -104.63 -0.55 -2.03 16 6 C -0.08 -1.13 8.78 -39.58 -0.35 -1.48 16 7 C -0.13 -1.67 10.05 -39.58 -0.40 -2.07 16 8 C -0.12 -1.34 10.05 -39.59 -0.40 -1.73 16 9 C -0.13 -1.49 10.05 -39.59 -0.40 -1.88 16 10 C -0.10 -1.16 9.70 -39.59 -0.38 -1.55 16 11 C 0.71 13.21 7.95 -86.91 -0.69 12.52 16 12 O -0.55 -11.88 11.61 5.30 0.06 -11.82 16 13 N -0.66 -12.53 5.28 -14.10 -0.07 -12.60 16 14 C 0.01 0.29 6.27 -83.57 -0.52 -0.24 16 15 C -0.09 -2.17 8.57 -39.79 -0.34 -2.51 16 16 C -0.15 -4.09 8.63 -39.26 -0.34 -4.43 16 17 C 0.10 2.82 5.57 -106.80 -0.59 2.23 16 18 C -0.46 -12.25 9.04 -37.85 -0.34 -12.59 16 19 H 0.08 2.00 7.90 -52.49 -0.41 1.58 16 20 C 0.07 1.88 5.15 -17.34 -0.09 1.79 16 21 N -0.79 -20.68 10.95 55.55 0.61 -20.07 16 22 Si 0.91 18.83 29.59 -169.99 -5.03 13.80 16 23 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 24 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 25 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 26 C -0.21 -5.25 9.74 -39.26 -0.38 -5.63 16 27 C -0.11 -2.38 9.89 -39.79 -0.39 -2.77 16 28 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.09 0.84 8.08 -51.92 -0.42 0.42 16 32 H 0.09 1.12 7.84 -51.93 -0.41 0.72 16 33 H 0.14 2.18 6.78 -52.49 -0.36 1.82 16 34 H 0.12 1.40 8.06 -52.48 -0.42 0.98 16 35 H 0.12 1.08 8.06 -52.48 -0.42 0.66 16 36 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 37 H 0.12 1.17 8.06 -52.48 -0.42 0.74 16 38 H 0.39 6.47 7.95 -40.82 -0.32 6.14 16 39 H 0.10 2.50 6.46 -52.48 -0.34 2.16 16 40 H 0.12 3.33 6.18 -52.49 -0.32 3.00 16 41 H 0.28 6.61 8.30 -40.82 -0.34 6.27 16 42 H 0.10 2.19 8.06 -52.49 -0.42 1.77 16 43 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 LS Contribution 366.55 15.07 5.52 5.52 Total: -1.00 -30.60 366.55 -9.80 -40.40 By element: Atomic # 1 Polarization: 18.84 SS G_CDS: -5.52 Total: 13.32 kcal Atomic # 6 Polarization: -14.03 SS G_CDS: -5.04 Total: -19.07 kcal Atomic # 7 Polarization: -40.46 SS G_CDS: 0.33 Total: -40.13 kcal Atomic # 8 Polarization: -13.78 SS G_CDS: -0.06 Total: -13.84 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -5.03 Total: 13.80 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -30.60 -9.80 -40.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154283557.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.205 kcal (2) G-P(sol) polarization free energy of solvation -30.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.401 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds