Wall clock time and date at job start Tue Mar 31 2020 14:49:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 N 1.41597 * 114.00017 * 2 1 4 4 C 1.46504 * 120.00243 * 269.99948 * 3 2 1 5 5 C 1.50701 * 109.47306 * 255.00221 * 4 3 2 6 6 C 1.38232 * 119.99678 * 269.72695 * 5 4 3 7 7 C 1.38243 * 119.99587 * 179.76741 * 6 5 4 8 8 C 1.38227 * 119.99791 * 0.50018 * 7 6 5 9 9 C 1.38232 * 120.00410 * 359.75530 * 8 7 6 10 10 C 1.38231 * 119.99863 * 359.97438 * 9 8 7 11 11 C 1.34783 * 120.00258 * 89.99951 * 3 2 1 12 12 O 1.21572 * 120.00019 * 179.97438 * 11 3 2 13 13 N 1.34777 * 119.99551 * 0.02562 * 11 3 2 14 14 C 1.39245 * 119.99688 * 185.15107 * 13 11 3 15 15 C 1.39476 * 119.83197 * 34.38778 * 14 13 11 16 16 C 1.36379 * 120.16811 * 180.24899 * 15 14 13 17 17 C 1.40865 * 119.82557 * 359.50421 * 16 15 14 18 18 C 1.41157 * 120.16398 * 180.22764 * 17 16 15 19 19 H 1.07998 * 120.00467 * 205.50035 * 18 17 16 20 20 C 1.39895 * 119.99954 * 25.50061 * 18 17 16 21 21 N 1.30879 * 119.99808 * 16.70900 * 20 18 17 22 22 Si 1.86793 * 120.00136 * 196.71443 * 20 18 17 23 23 H 1.48500 * 109.47159 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47531 * 119.99439 * 22 20 18 25 25 H 1.48500 * 109.47307 * 239.99782 * 22 20 18 26 26 C 1.40873 * 119.67259 * 0.51095 * 17 16 15 27 27 C 1.36370 * 119.82684 * 359.74031 * 26 17 16 28 28 H 1.09000 * 109.47169 * 59.99787 * 1 2 3 29 29 H 1.08997 * 109.46703 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46791 * 299.99809 * 1 2 3 31 31 H 1.09008 * 109.46476 * 15.00088 * 4 3 2 32 32 H 1.08991 * 109.47288 * 134.99815 * 4 3 2 33 33 H 1.08001 * 120.00352 * 359.97438 * 6 5 4 34 34 H 1.08004 * 119.99738 * 180.22956 * 7 6 5 35 35 H 1.08007 * 119.99674 * 179.72600 * 8 7 6 36 36 H 1.08001 * 120.00221 * 179.97438 * 9 8 7 37 37 H 1.08004 * 119.99933 * 179.97438 * 10 9 8 38 38 H 0.96998 * 119.99985 * 5.14946 * 13 11 3 39 39 H 1.08005 * 119.91866 * 359.97303 * 15 14 13 40 40 H 1.07993 * 120.08306 * 179.73810 * 16 15 14 41 41 H 0.97000 * 119.99937 * 180.02562 * 21 20 18 42 42 H 1.08001 * 120.08499 * 179.71647 * 26 17 16 43 43 H 1.08000 * 119.91566 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0049 1.2935 0.0000 4 6 2.3029 1.9628 -1.2687 5 6 3.7884 1.9249 -1.5199 6 6 4.5931 2.9513 -1.0618 7 6 5.9564 2.9142 -1.2881 8 6 6.5133 1.8559 -1.9814 9 6 5.7079 0.8323 -2.4441 10 6 4.3454 0.8665 -2.2130 11 6 2.2791 1.9092 1.1672 12 8 2.7740 3.0197 1.1672 13 7 2.0054 1.2934 2.3344 14 6 2.1880 1.9696 3.5379 15 6 1.9451 3.3413 3.6068 16 6 2.1265 4.0114 4.7807 17 6 2.5503 3.3125 5.9280 18 6 2.7358 3.9981 7.1479 19 1 3.4199 3.6090 7.8875 20 6 2.0334 5.1816 7.3989 21 7 0.9831 5.4844 6.6791 22 14 2.5945 6.3296 8.7614 23 1 3.7974 5.7627 9.4224 24 1 2.9255 7.6575 8.1849 25 1 1.5064 6.4811 9.7606 26 6 2.7939 1.9272 5.8504 27 6 2.6130 1.2718 4.6683 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.7841 1.4515 -2.0797 32 1 1.9689 2.9991 -1.2201 33 1 4.1573 3.7804 -0.5242 34 1 6.5857 3.7142 -0.9269 35 1 7.5778 1.8292 -2.1620 36 1 6.1430 0.0057 -2.9861 37 1 3.7160 0.0669 -2.5749 38 1 1.6813 0.3791 2.3360 39 1 1.6168 3.8751 2.7271 40 1 1.9421 5.0742 4.8314 41 1 0.4963 6.3052 6.8529 42 1 3.1235 1.3856 6.7248 43 1 2.7998 0.2099 4.6071 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000154283557.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:49 Heat of formation + Delta-G solvation = 18.008408 kcal Electronic energy + Delta-G solvation = -26933.343549 eV Core-core repulsion = 23138.175638 eV Total energy + Delta-G solvation = -3795.167911 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.59458 -40.09843 -39.26779 -38.28858 -36.31932 -34.84834 -34.55594 -32.00996 -31.74217 -31.38672 -30.64869 -27.89702 -27.40305 -26.04550 -23.46605 -23.36677 -23.03574 -22.17635 -21.28545 -19.80369 -19.23289 -18.67364 -17.77547 -17.39680 -16.91111 -16.77907 -16.08705 -15.97490 -15.83175 -15.78680 -15.63553 -15.27676 -14.82586 -14.50050 -14.26776 -14.11104 -13.94037 -13.65996 -13.57362 -13.39933 -13.17168 -12.92932 -12.80561 -12.78772 -12.40945 -12.19622 -11.86969 -11.78897 -11.61567 -11.46632 -11.22901 -10.97781 -10.70292 -10.12353 -9.77832 -9.69473 -9.44877 -8.83092 -8.58085 -6.25666 0.19546 0.54009 0.83236 1.04846 1.14867 1.39053 1.47697 1.54631 2.03189 2.22170 2.40516 2.77457 2.93176 3.73062 3.76480 3.88106 3.99703 4.17480 4.30009 4.33483 4.37400 4.42120 4.44288 4.46641 4.51740 4.68810 4.75325 4.77739 4.96085 5.08616 5.10666 5.16660 5.19194 5.29876 5.35223 5.43627 5.57052 5.62997 5.64770 5.70659 5.78446 6.08402 6.11589 6.14308 6.14983 6.35917 6.68849 6.94294 6.99446 7.01776 7.51506 8.35115 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.015758 B = 0.003019 C = 0.002743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.452911 B = 9273.876918 C =10205.529305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.014 4.014 2 O -0.151 6.151 3 N -0.487 5.487 4 C 0.180 3.820 5 C -0.124 4.124 6 C -0.105 4.105 7 C -0.145 4.145 8 C -0.118 4.118 9 C -0.133 4.133 10 C -0.099 4.099 11 C 0.702 3.298 12 O -0.589 6.589 13 N -0.655 5.655 14 C 0.027 3.973 15 C -0.096 4.096 16 C -0.175 4.175 17 C 0.074 3.926 18 C -0.494 4.494 19 H 0.079 0.921 20 C 0.032 3.968 21 N -0.827 5.827 22 Si 0.983 3.017 23 H -0.256 1.256 24 H -0.268 1.268 25 H -0.264 1.264 26 C -0.221 4.221 27 C -0.102 4.102 28 H 0.067 0.933 29 H 0.138 0.862 30 H 0.040 0.960 31 H 0.129 0.871 32 H 0.081 0.919 33 H 0.108 0.892 34 H 0.124 0.876 35 H 0.143 0.857 36 H 0.149 0.851 37 H 0.144 0.856 38 H 0.410 0.590 39 H 0.094 0.906 40 H 0.098 0.902 41 H 0.287 0.713 42 H 0.110 0.890 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.237 -10.270 -17.873 20.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 O -0.155 6.155 3 N -0.270 5.270 4 C 0.061 3.939 5 C -0.125 4.125 6 C -0.124 4.124 7 C -0.163 4.163 8 C -0.136 4.136 9 C -0.150 4.150 10 C -0.118 4.118 11 C 0.405 3.595 12 O -0.468 6.468 13 N -0.302 5.302 14 C -0.067 4.067 15 C -0.117 4.117 16 C -0.195 4.195 17 C 0.071 3.929 18 C -0.523 4.523 19 H 0.097 0.903 20 C -0.183 4.183 21 N -0.453 5.453 22 Si 0.804 3.196 23 H -0.180 1.180 24 H -0.193 1.193 25 H -0.189 1.189 26 C -0.241 4.241 27 C -0.123 4.123 28 H 0.086 0.914 29 H 0.155 0.845 30 H 0.059 0.941 31 H 0.147 0.853 32 H 0.099 0.901 33 H 0.126 0.874 34 H 0.142 0.858 35 H 0.161 0.839 36 H 0.167 0.833 37 H 0.161 0.839 38 H 0.247 0.753 39 H 0.112 0.888 40 H 0.116 0.884 41 H 0.097 0.903 42 H 0.128 0.872 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 1.463 -9.493 -17.940 20.349 hybrid contribution -0.456 0.517 0.809 1.062 sum 1.007 -8.976 -17.131 19.366 Atomic orbital electron populations 1.23650 0.80083 1.05717 1.01678 1.90597 1.21772 1.06369 1.96734 1.49345 1.62158 1.11085 1.04435 1.20566 0.92009 0.97830 0.83545 1.20216 0.96172 0.95905 1.00224 1.21334 0.94544 0.99022 0.97472 1.21392 0.94961 0.99918 1.00078 1.21496 1.01051 0.93834 0.97220 1.21476 0.93621 0.99327 1.00602 1.21311 0.95894 0.97048 0.97531 1.16065 0.79244 0.83721 0.80494 1.90921 1.50872 1.19983 1.84994 1.41945 1.68395 1.17199 1.02662 1.17024 1.12319 0.91944 0.85412 1.20413 1.00816 0.93790 0.96667 1.20858 1.07349 0.99172 0.92134 1.17980 0.89918 0.91877 0.93134 1.19817 1.23107 1.07323 1.02102 0.90283 1.26793 0.92877 0.98922 0.99674 1.69914 1.13668 1.23711 1.38025 0.85146 0.79494 0.77525 0.77461 1.17968 1.19269 1.18888 1.20785 1.11857 0.93858 0.97586 1.20327 1.00530 0.99214 0.92204 0.91413 0.84475 0.94130 0.85307 0.90082 0.87401 0.85778 0.83911 0.83294 0.83866 0.75317 0.88834 0.88400 0.90266 0.87215 0.85463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.21 11.45 113.37 1.30 1.08 16 2 O -0.15 -3.37 10.54 -38.78 -0.41 -3.78 16 3 N -0.49 -13.62 3.01 -482.29 -1.45 -15.07 16 4 C 0.18 4.22 5.85 85.63 0.50 4.72 16 5 C -0.12 -3.18 5.25 -19.87 -0.10 -3.29 16 6 C -0.10 -3.16 8.78 22.27 0.20 -2.97 16 7 C -0.15 -3.84 10.05 22.27 0.22 -3.62 16 8 C -0.12 -2.51 10.05 22.27 0.22 -2.29 16 9 C -0.13 -2.54 10.05 22.27 0.22 -2.32 16 10 C -0.10 -2.07 9.70 22.27 0.22 -1.85 16 11 C 0.70 26.19 7.95 179.05 1.42 27.62 16 12 O -0.59 -26.23 11.61 -3.94 -0.05 -26.28 16 13 N -0.65 -24.39 5.28 -316.79 -1.67 -26.06 16 14 C 0.03 1.23 6.27 38.56 0.24 1.47 16 15 C -0.10 -5.02 8.57 22.13 0.19 -4.83 16 16 C -0.17 -9.90 8.63 22.48 0.19 -9.71 16 17 C 0.07 4.11 5.57 -21.27 -0.12 3.99 16 18 C -0.49 -27.26 9.04 23.39 0.21 -27.04 16 19 H 0.08 4.17 7.90 -2.91 -0.02 4.14 16 20 C 0.03 1.65 5.15 85.24 0.44 2.08 16 21 N -0.83 -44.74 10.95 21.82 0.24 -44.50 16 22 Si 0.98 39.27 29.59 68.60 2.03 41.30 16 23 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 24 H -0.27 -10.41 7.11 99.48 0.71 -9.71 16 25 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 26 C -0.22 -10.92 9.74 22.48 0.22 -10.70 16 27 C -0.10 -4.53 9.89 22.13 0.22 -4.31 16 28 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.14 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.13 1.98 8.08 -2.38 -0.02 1.97 16 32 H 0.08 2.05 7.84 -2.39 -0.02 2.03 16 33 H 0.11 3.79 6.78 -2.91 -0.02 3.77 16 34 H 0.12 3.01 8.06 -2.91 -0.02 2.99 16 35 H 0.14 2.24 8.06 -2.91 -0.02 2.22 16 36 H 0.15 1.92 8.06 -2.91 -0.02 1.90 16 37 H 0.14 2.22 8.06 -2.91 -0.02 2.19 16 38 H 0.41 12.62 7.95 -92.71 -0.74 11.88 16 39 H 0.09 4.91 6.46 -2.91 -0.02 4.89 16 40 H 0.10 5.84 6.18 -2.91 -0.02 5.82 16 41 H 0.29 14.01 8.30 -92.71 -0.77 13.24 16 42 H 0.11 4.99 8.06 -2.91 -0.02 4.97 16 43 H 0.13 4.62 8.06 -2.91 -0.02 4.59 16 Total: -1.00 -69.92 366.55 4.79 -65.13 By element: Atomic # 1 Polarization: 40.92 SS G_CDS: 0.30 Total: 41.22 kcal Atomic # 6 Polarization: -37.76 SS G_CDS: 5.80 Total: -31.96 kcal Atomic # 7 Polarization: -82.75 SS G_CDS: -2.88 Total: -85.63 kcal Atomic # 8 Polarization: -29.60 SS G_CDS: -0.45 Total: -30.06 kcal Atomic # 14 Polarization: 39.27 SS G_CDS: 2.03 Total: 41.30 kcal Total: -69.92 4.79 -65.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154283557.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.143 kcal (2) G-P(sol) polarization free energy of solvation -69.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.135 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds