Wall clock time and date at job start Tue Mar 31 2020 14:35:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35894 * 116.99978 * 2 1 4 4 C 1.38787 * 119.91115 * 359.97231 * 3 2 1 5 5 C 1.37843 * 120.16630 * 179.76694 * 4 3 2 6 6 C 1.39822 * 119.98096 * 0.53401 * 5 4 3 7 7 C 1.47241 * 120.08788 * 179.74470 * 6 5 4 8 8 C 1.34444 * 120.00279 * 359.72457 * 7 6 5 9 9 C 1.47157 * 120.00470 * 179.72548 * 8 7 6 10 10 C 1.40220 * 120.59532 * 179.72209 * 9 8 7 11 11 C 1.38161 * 118.25152 * 179.78224 * 10 9 8 12 12 N 1.32537 * 119.23150 * 0.49015 * 11 10 9 13 13 C 1.31833 * 121.14721 * 359.74727 * 12 11 10 14 14 N 1.31622 * 121.93083 * 0.02562 * 13 12 11 15 15 C 1.39828 * 119.81994 * 359.46972 * 6 5 4 16 16 C 1.38170 * 119.83911 * 0.25257 * 15 6 5 17 17 O 1.35994 * 119.99423 * 180.02562 * 16 15 6 18 18 C 1.42895 * 117.00007 * 359.97438 * 17 16 15 19 19 C 1.53004 * 109.47287 * 179.97438 * 18 17 16 20 20 C 1.50697 * 109.47041 * 180.02562 * 19 18 17 21 21 H 1.07998 * 120.00184 * 0.02562 * 20 19 18 22 22 C 1.37884 * 119.99568 * 180.02562 * 20 19 18 23 23 N 1.31506 * 120.00319 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 119.99524 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47205 * 90.00010 * 24 22 20 26 26 H 1.48503 * 109.46773 * 209.99882 * 24 22 20 27 27 H 1.48500 * 109.47514 * 329.99794 * 24 22 20 28 28 H 1.09006 * 109.47205 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47419 * 300.00271 * 1 2 3 30 30 H 1.09002 * 109.47040 * 60.00152 * 1 2 3 31 31 H 1.08000 * 119.91723 * 0.02562 * 4 3 2 32 32 H 1.07992 * 120.00916 * 180.25817 * 5 4 3 33 33 H 1.08005 * 119.99956 * 179.44834 * 7 6 5 34 34 H 1.08000 * 119.99251 * 359.72381 * 8 7 6 35 35 H 1.07992 * 120.87225 * 0.02562 * 10 9 8 36 36 H 1.08003 * 120.37991 * 180.23568 * 11 10 9 37 37 H 1.08003 * 119.03814 * 179.97438 * 13 12 11 38 38 H 1.08005 * 120.07677 * 180.27051 * 15 6 5 39 39 H 1.09001 * 109.47137 * 299.99997 * 18 17 16 40 40 H 1.09005 * 109.47071 * 60.00280 * 18 17 16 41 41 H 1.09001 * 109.47069 * 300.00087 * 19 18 17 42 42 H 1.08997 * 109.46947 * 59.99883 * 19 18 17 43 43 H 0.96999 * 120.00409 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2882 2.3736 -0.0006 5 6 1.9086 3.6046 0.0043 6 6 3.3045 3.6836 -0.0015 7 6 3.9695 4.9972 -0.0020 8 6 3.2344 6.1229 -0.0025 9 6 3.8990 7.4358 0.0030 10 6 3.1445 8.6177 -0.0033 11 6 3.8183 9.8238 0.0070 12 7 5.1436 9.8248 0.0125 13 6 5.8263 8.6970 0.0133 14 7 5.2312 7.5230 0.0082 15 6 4.0673 2.5116 -0.0010 16 6 3.4378 1.2816 0.0000 17 8 4.1765 0.1399 0.0011 18 6 5.5979 0.2868 0.0005 19 6 6.2536 -1.0956 0.0025 20 6 7.7526 -0.9405 0.0026 21 1 8.1935 0.0453 0.0018 22 6 8.5611 -2.0574 0.0038 23 7 8.0243 -3.2579 0.0053 24 14 10.4192 -1.8652 0.0046 25 1 10.9109 -1.8134 1.4049 26 1 11.0367 -3.0209 -0.6944 27 1 10.7873 -0.6087 -0.6961 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 0.2099 2.3139 -0.0006 32 1 1.3165 4.5077 0.0080 33 1 5.0480 5.0566 0.0025 34 1 2.1561 6.0635 -0.0071 35 1 2.0650 8.5860 -0.0119 36 1 3.2713 10.7551 0.0064 37 1 6.9056 8.7375 0.0174 38 1 5.1459 2.5678 -0.0010 39 1 5.9063 0.8343 -0.8901 40 1 5.9067 0.8363 0.8899 41 1 5.9452 -1.6427 0.8934 42 1 5.9449 -1.6454 -0.8865 43 1 8.5930 -4.0436 0.0064 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157279498.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:38 Heat of formation + Delta-G solvation = 8.592516 kcal Electronic energy + Delta-G solvation = -25363.590635 eV Core-core repulsion = 21568.014420 eV Total energy + Delta-G solvation = -3795.576215 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.09929 -40.39987 -38.25960 -37.36163 -35.07767 -33.40506 -33.04320 -32.02090 -30.69693 -29.91259 -28.85114 -27.13721 -25.19206 -24.94896 -24.38956 -22.70492 -22.32490 -20.56841 -20.00232 -18.45742 -17.81586 -17.23778 -16.89184 -16.16768 -15.92424 -15.80412 -15.77458 -15.10493 -15.04619 -15.01596 -14.67848 -14.57571 -14.06098 -13.91294 -13.50912 -12.95489 -12.87454 -12.34431 -12.29426 -12.04560 -11.91843 -11.65166 -11.53229 -11.19735 -11.17486 -11.03454 -10.89944 -10.80128 -10.56951 -10.33383 -9.87277 -9.65224 -9.53405 -9.39354 -9.27984 -8.44569 -8.39591 -7.46479 -6.08205 -4.12841 0.07956 0.70684 1.21554 1.42744 2.45569 3.29175 3.29649 3.35028 3.37912 3.61559 3.72268 3.74415 3.86839 3.90176 4.10010 4.41915 4.61862 4.66570 4.74962 4.89379 4.92384 4.99906 5.08926 5.14873 5.21343 5.28199 5.30649 5.33352 5.43295 5.48646 5.65589 5.95922 6.02570 6.03799 6.08029 6.10994 6.19698 6.32825 6.58312 6.64890 6.71776 6.76464 7.22948 7.54882 7.66911 7.82423 7.82902 8.06388 8.25698 8.92840 9.51357 11.03329 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.008274 B = 0.002804 C = 0.002098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3383.283773 B = 9982.537260 C =13340.059777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.299 6.299 3 C 0.105 3.895 4 C -0.180 4.180 5 C -0.108 4.108 6 C -0.080 4.080 7 C -0.012 4.012 8 C -0.164 4.164 9 C 0.219 3.781 10 C -0.226 4.226 11 C 0.147 3.853 12 N -0.535 5.535 13 C 0.302 3.698 14 N -0.523 5.523 15 C -0.153 4.153 16 C 0.117 3.883 17 O -0.303 6.303 18 C 0.063 3.937 19 C 0.026 3.974 20 C -0.526 4.526 21 H 0.058 0.942 22 C 0.060 3.940 23 N -0.889 5.889 24 Si 0.898 3.102 25 H -0.279 1.279 26 H -0.285 1.285 27 H -0.272 1.272 28 H 0.099 0.901 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.134 0.866 32 H 0.127 0.873 33 H 0.136 0.864 34 H 0.136 0.864 35 H 0.147 0.853 36 H 0.166 0.834 37 H 0.196 0.804 38 H 0.143 0.857 39 H 0.051 0.949 40 H 0.051 0.949 41 H 0.028 0.972 42 H 0.028 0.972 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.652 21.167 -0.016 26.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.212 6.212 3 C 0.059 3.941 4 C -0.199 4.199 5 C -0.126 4.126 6 C -0.080 4.080 7 C -0.032 4.032 8 C -0.182 4.182 9 C 0.076 3.924 10 C -0.248 4.248 11 C -0.017 4.017 12 N -0.250 5.250 13 C 0.013 3.987 14 N -0.237 5.237 15 C -0.172 4.172 16 C 0.070 3.930 17 O -0.216 6.216 18 C -0.011 4.011 19 C -0.011 4.011 20 C -0.564 4.564 21 H 0.077 0.923 22 C -0.142 4.142 23 N -0.527 5.527 24 Si 0.726 3.274 25 H -0.205 1.205 26 H -0.211 1.211 27 H -0.197 1.197 28 H 0.118 0.882 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.152 0.848 32 H 0.145 0.855 33 H 0.154 0.846 34 H 0.153 0.847 35 H 0.165 0.835 36 H 0.183 0.817 37 H 0.213 0.787 38 H 0.161 0.839 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.046 0.954 42 H 0.047 0.953 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -15.575 20.634 -0.016 25.853 hybrid contribution -0.003 0.343 0.005 0.343 sum -15.578 20.978 -0.011 26.129 Atomic orbital electron populations 1.23066 0.78956 1.03983 1.00896 1.86243 1.20661 1.25895 1.88394 1.18542 0.89479 0.85151 1.00908 1.20901 0.99714 0.91381 1.07891 1.20918 0.93390 0.96962 1.01333 1.18648 0.92846 0.92245 1.04284 1.22388 1.00535 0.90368 0.89951 1.21683 0.99121 0.88949 1.08479 1.20486 0.89109 0.94004 0.88836 1.22910 1.02688 0.93908 1.05249 1.23109 0.90263 0.98182 0.90174 1.68426 1.09025 1.32425 1.15098 1.24947 1.01259 0.82471 0.90018 1.68641 1.10532 1.29672 1.14879 1.21371 1.00868 0.90299 1.04678 1.18334 0.88546 0.87128 0.99018 1.86299 1.21206 1.26900 1.87209 1.23383 0.74708 1.03427 0.99628 1.19111 0.94215 0.88806 0.98951 1.20973 0.90310 0.92927 1.52220 0.92334 1.24988 0.99122 0.95140 0.94934 1.69974 1.35470 0.97579 1.49706 0.86495 0.84920 0.77803 0.78218 1.20505 1.21075 1.19721 0.88226 0.92858 0.92865 0.84833 0.85530 0.84605 0.84693 0.83532 0.81667 0.78742 0.83912 0.93061 0.93071 0.95362 0.95348 0.92723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.81 101.05 0.99 1.24 16 2 O -0.30 -4.64 10.27 -34.09 -0.35 -4.99 16 3 C 0.11 1.62 6.71 -38.96 -0.26 1.36 16 4 C -0.18 -2.11 9.01 -39.52 -0.36 -2.46 16 5 C -0.11 -1.18 9.40 -39.13 -0.37 -1.55 16 6 C -0.08 -1.01 5.87 -105.05 -0.62 -1.63 16 7 C -0.01 -0.13 9.45 -37.27 -0.35 -0.48 16 8 C -0.16 -1.56 9.32 -37.30 -0.35 -1.91 16 9 C 0.22 2.23 6.73 -82.77 -0.56 1.67 16 10 C -0.23 -1.74 9.94 -38.87 -0.39 -2.13 16 11 C 0.15 1.15 11.29 -17.28 -0.20 0.95 16 12 N -0.54 -5.36 10.43 -14.68 -0.15 -5.52 16 13 C 0.30 3.04 12.28 -92.27 -1.13 1.91 16 14 N -0.52 -5.99 9.50 -11.26 -0.11 -6.09 16 15 C -0.15 -2.33 8.77 -39.01 -0.34 -2.68 16 16 C 0.12 2.06 6.69 -39.19 -0.26 1.79 16 17 O -0.30 -6.40 9.91 -34.41 -0.34 -6.74 16 18 C 0.06 1.35 4.68 37.16 0.17 1.52 16 19 C 0.03 0.70 5.34 -27.88 -0.15 0.55 16 20 C -0.53 -14.72 9.11 -34.44 -0.31 -15.04 16 21 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 22 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 23 N -0.89 -26.63 13.29 55.43 0.74 -25.89 16 24 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 16 25 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 26 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 27 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 28 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.05 0.42 7.65 -51.93 -0.40 0.02 16 30 H 0.05 0.42 7.65 -51.93 -0.40 0.02 16 31 H 0.13 1.15 6.27 -52.49 -0.33 0.82 16 32 H 0.13 0.99 6.15 -52.49 -0.32 0.66 16 33 H 0.14 1.62 7.44 -52.48 -0.39 1.23 16 34 H 0.14 0.96 6.06 -52.49 -0.32 0.64 16 35 H 0.15 0.69 8.06 -52.49 -0.42 0.26 16 36 H 0.17 0.72 8.06 -52.48 -0.42 0.30 16 37 H 0.20 1.42 8.06 -52.48 -0.42 1.00 16 38 H 0.14 2.13 6.28 -52.48 -0.33 1.80 16 39 H 0.05 1.04 7.66 -51.93 -0.40 0.64 16 40 H 0.05 1.04 7.66 -51.93 -0.40 0.64 16 41 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 42 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 371.60 15.07 5.60 5.60 Total: -1.00 -34.00 371.60 -9.57 -43.56 By element: Atomic # 1 Polarization: 4.33 SS G_CDS: -5.36 Total: -1.03 kcal Atomic # 6 Polarization: -10.69 SS G_CDS: -4.57 Total: -15.26 kcal Atomic # 7 Polarization: -37.98 SS G_CDS: 0.48 Total: -37.50 kcal Atomic # 8 Polarization: -11.04 SS G_CDS: -0.69 Total: -11.73 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.00 -9.57 -43.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157279498.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.155 kcal (2) G-P(sol) polarization free energy of solvation -33.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.562 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds