Wall clock time and date at job start Tue Mar 31 2020 14:35:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35894 * 116.99978 * 2 1 4 4 C 1.38787 * 119.91115 * 359.97231 * 3 2 1 5 5 C 1.37843 * 120.16630 * 179.76694 * 4 3 2 6 6 C 1.39822 * 119.98096 * 0.53401 * 5 4 3 7 7 C 1.47241 * 120.08788 * 179.74470 * 6 5 4 8 8 C 1.34444 * 120.00279 * 359.72457 * 7 6 5 9 9 C 1.47157 * 120.00470 * 179.72548 * 8 7 6 10 10 C 1.40220 * 120.59532 * 179.72209 * 9 8 7 11 11 C 1.38161 * 118.25152 * 179.78224 * 10 9 8 12 12 N 1.32537 * 119.23150 * 0.49015 * 11 10 9 13 13 C 1.31833 * 121.14721 * 359.74727 * 12 11 10 14 14 N 1.31622 * 121.93083 * 0.02562 * 13 12 11 15 15 C 1.39828 * 119.81994 * 359.46972 * 6 5 4 16 16 C 1.38170 * 119.83911 * 0.25257 * 15 6 5 17 17 O 1.35994 * 119.99423 * 180.02562 * 16 15 6 18 18 C 1.42895 * 117.00007 * 359.97438 * 17 16 15 19 19 C 1.53004 * 109.47287 * 179.97438 * 18 17 16 20 20 C 1.50697 * 109.47041 * 180.02562 * 19 18 17 21 21 H 1.07998 * 120.00184 * 0.02562 * 20 19 18 22 22 C 1.37884 * 119.99568 * 180.02562 * 20 19 18 23 23 N 1.31506 * 120.00319 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 119.99524 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47205 * 90.00010 * 24 22 20 26 26 H 1.48503 * 109.46773 * 209.99882 * 24 22 20 27 27 H 1.48500 * 109.47514 * 329.99794 * 24 22 20 28 28 H 1.09006 * 109.47205 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47419 * 300.00271 * 1 2 3 30 30 H 1.09002 * 109.47040 * 60.00152 * 1 2 3 31 31 H 1.08000 * 119.91723 * 0.02562 * 4 3 2 32 32 H 1.07992 * 120.00916 * 180.25817 * 5 4 3 33 33 H 1.08005 * 119.99956 * 179.44834 * 7 6 5 34 34 H 1.08000 * 119.99251 * 359.72381 * 8 7 6 35 35 H 1.07992 * 120.87225 * 0.02562 * 10 9 8 36 36 H 1.08003 * 120.37991 * 180.23568 * 11 10 9 37 37 H 1.08003 * 119.03814 * 179.97438 * 13 12 11 38 38 H 1.08005 * 120.07677 * 180.27051 * 15 6 5 39 39 H 1.09001 * 109.47137 * 299.99997 * 18 17 16 40 40 H 1.09005 * 109.47071 * 60.00280 * 18 17 16 41 41 H 1.09001 * 109.47069 * 300.00087 * 19 18 17 42 42 H 1.08997 * 109.46947 * 59.99883 * 19 18 17 43 43 H 0.96999 * 120.00409 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2882 2.3736 -0.0006 5 6 1.9086 3.6046 0.0043 6 6 3.3045 3.6836 -0.0015 7 6 3.9695 4.9972 -0.0020 8 6 3.2344 6.1229 -0.0025 9 6 3.8990 7.4358 0.0030 10 6 3.1445 8.6177 -0.0033 11 6 3.8183 9.8238 0.0070 12 7 5.1436 9.8248 0.0125 13 6 5.8263 8.6970 0.0133 14 7 5.2312 7.5230 0.0082 15 6 4.0673 2.5116 -0.0010 16 6 3.4378 1.2816 0.0000 17 8 4.1765 0.1399 0.0011 18 6 5.5979 0.2868 0.0005 19 6 6.2536 -1.0956 0.0025 20 6 7.7526 -0.9405 0.0026 21 1 8.1935 0.0453 0.0018 22 6 8.5611 -2.0574 0.0038 23 7 8.0243 -3.2579 0.0053 24 14 10.4192 -1.8652 0.0046 25 1 10.9109 -1.8134 1.4049 26 1 11.0367 -3.0209 -0.6944 27 1 10.7873 -0.6087 -0.6961 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 0.2099 2.3139 -0.0006 32 1 1.3165 4.5077 0.0080 33 1 5.0480 5.0566 0.0025 34 1 2.1561 6.0635 -0.0071 35 1 2.0650 8.5860 -0.0119 36 1 3.2713 10.7551 0.0064 37 1 6.9056 8.7375 0.0174 38 1 5.1459 2.5678 -0.0010 39 1 5.9063 0.8343 -0.8901 40 1 5.9067 0.8363 0.8899 41 1 5.9452 -1.6427 0.8934 42 1 5.9449 -1.6454 -0.8865 43 1 8.5930 -4.0436 0.0064 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157279498.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:38 Heat of formation + Delta-G solvation = -11.044433 kcal Electronic energy + Delta-G solvation = -25364.442157 eV Core-core repulsion = 21568.014420 eV Total energy + Delta-G solvation = -3796.427737 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.78686 -41.50064 -39.51366 -38.44514 -35.92326 -35.44062 -33.82811 -32.87525 -32.33727 -31.17080 -29.87780 -27.96098 -27.02624 -25.77941 -25.12241 -24.00225 -23.45924 -22.11555 -20.95805 -19.54328 -18.65141 -18.54025 -18.00404 -17.64259 -17.17076 -16.96902 -16.52285 -16.35421 -16.34168 -15.96359 -15.72909 -15.70090 -15.11560 -14.68786 -14.36054 -14.32890 -14.29085 -13.87770 -13.47039 -13.32334 -13.03195 -12.80993 -12.75730 -12.57580 -12.49318 -12.30962 -11.98848 -11.94369 -11.72767 -11.65885 -11.60735 -11.41212 -11.01976 -10.62958 -10.23792 -10.20343 -9.50593 -8.50863 -8.27185 -6.41173 -0.71312 0.07610 0.31200 0.41171 1.39939 1.42531 1.53764 1.60022 2.25059 2.38922 2.49109 2.78564 2.99698 3.06490 3.06898 3.30133 3.43044 3.76815 3.90261 3.99146 4.12871 4.18177 4.23211 4.24888 4.26345 4.31368 4.41273 4.44550 4.44814 4.66122 4.68726 4.71724 4.76539 4.81351 5.10326 5.17724 5.24355 5.31045 5.38602 5.45525 5.55373 5.64610 5.69764 5.73064 6.04666 6.10335 6.22358 6.67786 6.73635 7.14593 7.28846 8.86103 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.008274 B = 0.002804 C = 0.002098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3383.283773 B = 9982.537260 C =13340.059777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.339 6.339 3 C 0.087 3.913 4 C -0.166 4.166 5 C -0.093 4.093 6 C -0.075 4.075 7 C -0.043 4.043 8 C -0.131 4.131 9 C 0.186 3.814 10 C -0.208 4.208 11 C 0.140 3.860 12 N -0.551 5.551 13 C 0.285 3.715 14 N -0.550 5.550 15 C -0.166 4.166 16 C 0.069 3.931 17 O -0.335 6.335 18 C 0.084 3.916 19 C 0.030 3.970 20 C -0.546 4.546 21 H 0.070 0.930 22 C 0.001 3.999 23 N -0.931 5.931 24 Si 0.977 3.023 25 H -0.270 1.270 26 H -0.280 1.280 27 H -0.259 1.259 28 H 0.109 0.891 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.173 0.827 32 H 0.173 0.827 33 H 0.118 0.882 34 H 0.171 0.829 35 H 0.186 0.814 36 H 0.202 0.798 37 H 0.209 0.791 38 H 0.132 0.868 39 H 0.058 0.942 40 H 0.058 0.942 41 H -0.003 1.003 42 H -0.003 1.003 43 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.792 24.965 -0.017 31.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.253 6.253 3 C 0.041 3.959 4 C -0.184 4.184 5 C -0.111 4.111 6 C -0.075 4.075 7 C -0.064 4.064 8 C -0.149 4.149 9 C 0.044 3.956 10 C -0.230 4.230 11 C -0.024 4.024 12 N -0.266 5.266 13 C -0.003 4.003 14 N -0.265 5.265 15 C -0.185 4.185 16 C 0.023 3.977 17 O -0.249 6.249 18 C 0.009 3.991 19 C -0.007 4.007 20 C -0.584 4.584 21 H 0.088 0.912 22 C -0.197 4.197 23 N -0.570 5.570 24 Si 0.800 3.200 25 H -0.195 1.195 26 H -0.205 1.205 27 H -0.183 1.183 28 H 0.127 0.873 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.191 0.809 32 H 0.190 0.810 33 H 0.136 0.864 34 H 0.188 0.812 35 H 0.203 0.797 36 H 0.219 0.781 37 H 0.225 0.775 38 H 0.150 0.850 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.015 0.985 42 H 0.015 0.985 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -17.743 24.454 -0.017 30.212 hybrid contribution 0.468 -0.602 0.006 0.763 sum -17.275 23.851 -0.011 29.450 Atomic orbital electron populations 1.23406 0.76153 1.05444 1.02797 1.86184 1.23763 1.26695 1.88700 1.18828 0.88879 0.86501 1.01697 1.21334 1.01344 0.90070 1.05632 1.21429 0.92660 0.98401 0.98579 1.18807 0.93812 0.91674 1.03226 1.22156 1.00008 0.90505 0.93732 1.22034 1.00498 0.87901 1.04443 1.20839 0.89154 0.95266 0.90387 1.23301 1.04427 0.92596 1.02638 1.23797 0.89681 0.99897 0.88986 1.68472 1.10498 1.32345 1.15274 1.25256 1.02141 0.82388 0.90498 1.68626 1.11846 1.30496 1.15573 1.21392 1.00738 0.90806 1.05548 1.18768 0.89593 0.86549 1.02770 1.86184 1.20385 1.29567 1.88804 1.22858 0.75877 1.00042 1.00276 1.18936 0.94774 0.91101 0.95868 1.21389 0.91077 0.93696 1.52213 0.91157 1.26056 1.04958 0.94591 0.94111 1.70124 1.37703 0.98609 1.50570 0.85277 0.77763 0.78276 0.78704 1.19489 1.20528 1.18324 0.87284 0.90815 0.90823 0.80934 0.80980 0.86411 0.81221 0.79682 0.78134 0.77491 0.85019 0.92354 0.92347 0.98491 0.98475 0.92413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.81 113.37 1.11 1.39 16 2 O -0.34 -10.75 10.27 -78.32 -0.80 -11.55 16 3 C 0.09 2.68 6.71 22.67 0.15 2.83 16 4 C -0.17 -3.38 9.01 22.31 0.20 -3.18 16 5 C -0.09 -1.69 9.40 22.56 0.21 -1.48 16 6 C -0.07 -1.81 5.87 -20.14 -0.12 -1.93 16 7 C -0.04 -0.93 9.45 23.77 0.22 -0.70 16 8 C -0.13 -2.05 9.32 23.75 0.22 -1.83 16 9 C 0.19 3.30 6.73 41.71 0.28 3.58 16 10 C -0.21 -2.33 9.94 22.73 0.23 -2.10 16 11 C 0.14 1.69 11.29 84.57 0.95 2.65 16 12 N -0.55 -10.01 10.43 -200.34 -2.09 -12.10 16 13 C 0.29 5.54 12.28 180.92 2.22 7.76 16 14 N -0.55 -12.16 9.50 -189.55 -1.80 -13.96 16 15 C -0.17 -5.29 8.77 22.64 0.20 -5.09 16 16 C 0.07 2.55 6.69 22.53 0.15 2.70 16 17 O -0.33 -15.38 9.91 -79.44 -0.79 -16.17 16 18 C 0.08 3.90 4.68 71.98 0.34 4.24 16 19 C 0.03 1.74 5.34 29.85 0.16 1.90 16 20 C -0.55 -31.82 9.11 25.60 0.23 -31.59 16 21 H 0.07 3.83 7.74 -2.91 -0.02 3.81 16 22 C 0.00 0.08 5.46 84.66 0.46 0.54 16 23 N -0.93 -57.98 13.29 21.45 0.28 -57.70 16 24 Si 0.98 44.56 29.54 68.60 2.03 46.58 16 25 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 26 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 27 H -0.26 -11.19 7.11 99.48 0.71 -10.49 16 28 H 0.11 1.64 8.14 -2.38 -0.02 1.62 16 29 H 0.07 0.97 7.65 -2.39 -0.02 0.95 16 30 H 0.07 0.97 7.65 -2.39 -0.02 0.95 16 31 H 0.17 2.10 6.27 -2.91 -0.02 2.08 16 32 H 0.17 1.52 6.15 -2.91 -0.02 1.51 16 33 H 0.12 2.93 7.44 -2.91 -0.02 2.91 16 34 H 0.17 1.35 6.06 -2.91 -0.02 1.33 16 35 H 0.19 0.55 8.06 -2.91 -0.02 0.52 16 36 H 0.20 0.83 8.06 -2.91 -0.02 0.80 16 37 H 0.21 3.03 8.06 -2.91 -0.02 3.01 16 38 H 0.13 4.29 6.28 -2.91 -0.02 4.27 16 39 H 0.06 2.56 7.66 -2.39 -0.02 2.54 16 40 H 0.06 2.56 7.66 -2.38 -0.02 2.54 16 41 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 42 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 43 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 Total: -1.00 -80.55 371.60 5.09 -75.46 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: 1.03 Total: 9.73 kcal Atomic # 6 Polarization: -27.52 SS G_CDS: 7.23 Total: -20.29 kcal Atomic # 7 Polarization: -80.15 SS G_CDS: -3.60 Total: -83.76 kcal Atomic # 8 Polarization: -26.13 SS G_CDS: -1.59 Total: -27.72 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.58 kcal Total: -80.55 5.09 -75.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157279498.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.412 kcal (2) G-P(sol) polarization free energy of solvation -80.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds