Wall clock time and date at job start Tue Mar 31 2020 14:35:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.36057 * 117.00226 * 2 1 4 4 C 1.38598 * 119.99355 * 359.97438 * 3 2 1 5 5 C 1.38325 * 120.04102 * 179.97438 * 4 3 2 6 6 F 1.35106 * 119.98118 * 180.02562 * 5 4 3 7 7 C 1.39007 * 120.03844 * 359.97438 * 5 4 3 8 8 N 1.40265 * 120.00445 * 179.97438 * 7 5 4 9 9 C 1.34769 * 120.00109 * 204.80757 * 8 7 5 10 10 O 1.21599 * 120.00169 * 5.63815 * 9 8 7 11 11 N 1.34780 * 120.00348 * 185.63684 * 9 8 7 12 12 C 1.46503 * 120.00334 * 180.02562 * 11 9 8 13 13 C 1.52993 * 109.47077 * 180.02562 * 12 11 9 14 14 C 1.53002 * 109.47350 * 180.02562 * 13 12 11 15 15 C 1.50693 * 109.47221 * 179.97438 * 14 13 12 16 16 H 1.07994 * 120.00619 * 359.97438 * 15 14 13 17 17 C 1.37883 * 119.99740 * 179.97438 * 15 14 13 18 18 N 1.31514 * 120.00267 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00049 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46969 * 0.02562 * 19 17 15 21 21 H 1.48494 * 109.47560 * 119.99954 * 19 17 15 22 22 H 1.48502 * 109.47404 * 240.00075 * 19 17 15 23 23 C 1.38751 * 119.99161 * 0.02562 * 7 5 4 24 24 C 1.38525 * 119.95592 * 359.97438 * 23 7 5 25 25 O 1.36041 * 120.01883 * 180.02562 * 24 23 7 26 26 C 1.42899 * 117.00002 * 0.02562 * 25 24 23 27 27 H 1.09003 * 109.46887 * 60.00415 * 1 2 3 28 28 H 1.09004 * 109.47066 * 180.02562 * 1 2 3 29 29 H 1.08992 * 109.47219 * 300.00400 * 1 2 3 30 30 H 1.07995 * 119.98156 * 0.25994 * 4 3 2 31 31 H 0.97004 * 120.00225 * 24.81043 * 8 7 5 32 32 H 0.97006 * 119.99725 * 0.02562 * 11 9 8 33 33 H 1.09005 * 109.46624 * 300.00035 * 12 11 9 34 34 H 1.08996 * 109.46851 * 59.99980 * 12 11 9 35 35 H 1.09010 * 109.47289 * 299.99949 * 13 12 11 36 36 H 1.09002 * 109.47431 * 59.99706 * 13 12 11 37 37 H 1.09005 * 109.46426 * 299.99906 * 14 13 12 38 38 H 1.09002 * 109.47156 * 59.99461 * 14 13 12 39 39 H 0.97001 * 120.00389 * 179.97438 * 18 17 15 40 40 H 1.08001 * 120.02155 * 180.02562 * 23 7 5 41 41 H 1.09002 * 109.47215 * 59.99676 * 26 25 24 42 42 H 1.08998 * 109.47384 * 180.02562 * 26 25 24 43 43 H 1.09004 * 109.46655 * 299.99991 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0468 1.2122 0.0000 4 6 1.2918 2.3746 -0.0005 5 6 1.9189 3.6076 0.0000 6 9 1.1817 4.7398 0.0000 7 6 3.3069 3.6823 0.0016 8 7 3.9420 4.9330 0.0016 9 6 5.1923 5.0539 -0.4867 10 8 5.7312 4.1033 -1.0201 11 7 5.8454 6.2284 -0.3837 12 6 7.2043 6.3599 -0.9150 13 6 7.7121 7.7822 -0.6701 14 6 9.1311 7.9198 -1.2255 15 6 9.6310 9.3209 -0.9849 16 1 8.9998 10.0414 -0.4861 17 6 10.8945 9.6831 -1.4015 18 7 11.6636 8.8057 -2.0085 19 14 11.5140 11.4200 -1.1039 20 1 10.4651 12.2071 -0.4072 21 1 12.7368 11.3722 -0.2627 22 1 11.8329 12.0616 -2.4047 23 6 4.0641 2.5197 0.0022 24 6 3.4359 1.2850 0.0016 25 8 4.1771 0.1443 0.0027 26 6 5.5982 0.2939 0.0049 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 0.2134 2.3176 0.0033 31 1 3.4813 5.7109 0.3531 32 1 5.4156 6.9866 0.0422 33 1 7.8608 5.6487 -0.4136 34 1 7.1972 6.1555 -1.9856 35 1 7.0557 8.4937 -1.1712 36 1 7.7193 7.9862 0.4006 37 1 9.7878 7.2083 -0.7248 38 1 9.1236 7.7160 -2.2963 39 1 12.5523 9.0606 -2.3019 40 1 5.1426 2.5772 0.0038 41 1 5.9044 0.8430 0.8954 42 1 6.0672 -0.6900 0.0051 43 1 5.9070 0.8431 -0.8846 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171538254.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:50 Heat of formation + Delta-G solvation = -124.779039 kcal Electronic energy + Delta-G solvation = -26918.511476 eV Core-core repulsion = 22686.382611 eV Total energy + Delta-G solvation = -4232.128864 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.147 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.12678 -41.08791 -40.09572 -38.67183 -37.26273 -35.53296 -34.45737 -33.37378 -31.34015 -30.31726 -29.61091 -27.53176 -27.36146 -26.45983 -23.60610 -22.82091 -22.38250 -21.06768 -20.47565 -19.18548 -18.50174 -18.17951 -17.20006 -16.95998 -16.49882 -16.33488 -16.01473 -15.70355 -15.52614 -15.45188 -14.97738 -14.82375 -14.77936 -14.46142 -14.20128 -14.02465 -13.53672 -12.96601 -12.81990 -12.40013 -12.34209 -11.98506 -11.93917 -11.87525 -11.67519 -11.54091 -11.34010 -10.95571 -10.80112 -10.60628 -10.23565 -10.05203 -9.93029 -9.51344 -9.16187 -9.00174 -8.74678 -8.41303 -7.74678 -6.05751 -4.08922 0.84009 0.91947 2.40677 2.90689 2.96254 3.02888 3.27425 3.35191 3.38429 3.38760 3.91407 4.04149 4.34182 4.41382 4.66922 4.79655 4.82178 4.84085 5.00807 5.12086 5.14697 5.21565 5.30263 5.41159 5.45839 5.54505 5.65253 5.70397 5.85193 6.02493 6.08349 6.33939 6.48779 6.52794 6.61311 6.72701 6.84339 6.93671 7.25204 7.58968 7.70634 7.82214 7.92692 8.33003 8.41159 8.97871 9.55564 11.05494 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.025460 B = 0.002040 C = 0.001904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.485821 B =13724.599635 C =14704.857368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.301 6.301 3 C 0.101 3.899 4 C -0.185 4.185 5 C 0.060 3.940 6 F -0.137 7.137 7 C 0.156 3.844 8 N -0.683 5.683 9 C 0.702 3.298 10 O -0.574 6.574 11 N -0.732 5.732 12 C 0.133 3.867 13 C -0.121 4.121 14 C 0.024 3.976 15 C -0.523 4.523 16 H 0.056 0.944 17 C 0.056 3.944 18 N -0.893 5.893 19 Si 0.893 3.107 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.284 1.284 23 C -0.164 4.164 24 C 0.117 3.883 25 O -0.302 6.302 26 C 0.023 3.977 27 H 0.056 0.944 28 H 0.101 0.899 29 H 0.055 0.945 30 H 0.150 0.850 31 H 0.411 0.589 32 H 0.397 0.603 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.055 0.945 36 H 0.055 0.945 37 H 0.020 0.980 38 H 0.020 0.980 39 H 0.261 0.739 40 H 0.175 0.825 41 H 0.056 0.944 42 H 0.101 0.899 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.238 -16.071 6.444 28.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.215 6.215 3 C 0.055 3.945 4 C -0.205 4.205 5 C 0.038 3.962 6 F -0.115 7.115 7 C 0.058 3.942 8 N -0.330 5.330 9 C 0.402 3.598 10 O -0.452 6.452 11 N -0.385 5.385 12 C 0.010 3.990 13 C -0.159 4.159 14 C -0.014 4.014 15 C -0.561 4.561 16 H 0.074 0.926 17 C -0.145 4.145 18 N -0.532 5.532 19 Si 0.721 3.279 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.210 1.210 23 C -0.185 4.185 24 C 0.071 3.929 25 O -0.215 6.215 26 C -0.072 4.072 27 H 0.074 0.926 28 H 0.119 0.881 29 H 0.074 0.926 30 H 0.168 0.832 31 H 0.246 0.754 32 H 0.231 0.769 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.038 0.962 38 H 0.038 0.962 39 H 0.071 0.929 40 H 0.192 0.808 41 H 0.075 0.925 42 H 0.120 0.880 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -22.454 -17.231 5.867 28.905 hybrid contribution -0.222 2.338 0.448 2.391 sum -22.676 -14.893 6.314 27.855 Atomic orbital electron populations 1.23104 0.78546 1.04143 1.01325 1.86220 1.21002 1.25161 1.89082 1.17826 0.88857 0.84791 1.03063 1.20684 1.00806 0.89684 1.09371 1.16807 0.86704 0.82362 1.10374 1.91472 1.76664 1.48837 1.94564 1.17100 0.88863 0.85639 1.02558 1.42562 1.15857 1.09384 1.65175 1.15946 0.80313 0.84368 0.79166 1.90868 1.67424 1.38205 1.48666 1.45447 1.18134 1.11618 1.63323 1.21625 0.78870 0.99587 0.98879 1.21912 1.00736 0.92208 1.01078 1.19032 0.88610 0.97247 0.96483 1.21227 0.99829 0.96865 1.38176 0.92574 1.25036 0.96937 0.97359 0.95169 1.69970 1.09393 1.34162 1.39677 0.86521 0.78791 0.84657 0.77925 1.19768 1.20991 1.20983 1.21345 1.02867 0.88536 1.05726 1.18076 0.88004 0.86157 1.00707 1.86165 1.19297 1.27469 1.88619 1.23163 0.77792 1.03974 1.02241 0.92586 0.88055 0.92624 0.83230 0.75359 0.76879 0.91573 0.91565 0.92630 0.92623 0.96201 0.96199 0.92944 0.80800 0.92522 0.88024 0.91707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.81 101.05 0.99 1.13 16 2 O -0.30 -3.16 10.28 -34.57 -0.36 -3.52 16 3 C 0.10 1.14 6.70 -39.13 -0.26 0.88 16 4 C -0.19 -1.81 9.01 -39.42 -0.36 -2.16 16 5 C 0.06 0.66 7.30 -39.26 -0.29 0.37 16 6 F -0.14 -1.45 16.80 2.25 0.04 -1.41 16 7 C 0.16 1.92 6.44 -83.52 -0.54 1.38 16 8 N -0.68 -7.90 5.32 -14.14 -0.08 -7.97 16 9 C 0.70 10.07 8.37 -86.92 -0.73 9.34 16 10 O -0.57 -10.04 13.51 5.28 0.07 -9.97 16 11 N -0.73 -9.79 5.56 -65.22 -0.36 -10.15 16 12 C 0.13 2.20 5.67 -4.04 -0.02 2.18 16 13 C -0.12 -2.26 5.27 -26.73 -0.14 -2.40 16 14 C 0.02 0.59 4.97 -27.89 -0.14 0.45 16 15 C -0.52 -14.32 9.11 -34.44 -0.31 -14.63 16 16 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 17 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 18 N -0.89 -26.42 13.29 55.43 0.74 -25.68 16 19 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 20 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 23 C -0.16 -2.11 7.70 -39.29 -0.30 -2.42 16 24 C 0.12 1.47 6.70 -39.15 -0.26 1.21 16 25 O -0.30 -3.73 10.28 -34.52 -0.35 -4.09 16 26 C 0.02 0.22 9.81 101.05 0.99 1.21 16 27 H 0.06 0.27 7.66 -51.93 -0.40 -0.13 16 28 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.25 7.66 -51.93 -0.40 -0.14 16 30 H 0.15 1.05 6.29 -52.49 -0.33 0.72 16 31 H 0.41 3.58 8.47 -40.82 -0.35 3.24 16 32 H 0.40 4.16 8.49 -40.82 -0.35 3.81 16 33 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 34 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.05 1.00 8.14 -51.92 -0.42 0.58 16 36 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 40 H 0.18 2.42 4.02 -52.49 -0.21 2.21 16 41 H 0.06 0.51 7.66 -51.93 -0.40 0.11 16 42 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.06 0.67 7.66 -51.93 -0.40 0.27 16 LS Contribution 367.32 15.07 5.54 5.54 Total: -1.00 -33.35 367.32 -7.00 -40.35 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -5.75 Total: 2.67 kcal Atomic # 6 Polarization: -0.51 SS G_CDS: -1.46 Total: -1.97 kcal Atomic # 7 Polarization: -44.10 SS G_CDS: 0.30 Total: -43.81 kcal Atomic # 8 Polarization: -16.93 SS G_CDS: -0.64 Total: -17.57 kcal Atomic # 9 Polarization: -1.45 SS G_CDS: 0.04 Total: -1.41 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.35 -7.00 -40.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171538254.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.431 kcal (2) G-P(sol) polarization free energy of solvation -33.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds