Wall clock time and date at job start Tue Mar 31 2020 14:35:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.36057 * 117.00226 * 2 1 4 4 C 1.38598 * 119.99355 * 359.97438 * 3 2 1 5 5 C 1.38325 * 120.04102 * 179.97438 * 4 3 2 6 6 F 1.35106 * 119.98118 * 180.02562 * 5 4 3 7 7 C 1.39007 * 120.03844 * 359.97438 * 5 4 3 8 8 N 1.40265 * 120.00445 * 179.97438 * 7 5 4 9 9 C 1.34769 * 120.00109 * 204.80757 * 8 7 5 10 10 O 1.21599 * 120.00169 * 5.63815 * 9 8 7 11 11 N 1.34780 * 120.00348 * 185.63684 * 9 8 7 12 12 C 1.46503 * 120.00334 * 180.02562 * 11 9 8 13 13 C 1.52993 * 109.47077 * 180.02562 * 12 11 9 14 14 C 1.53002 * 109.47350 * 180.02562 * 13 12 11 15 15 C 1.50693 * 109.47221 * 179.97438 * 14 13 12 16 16 H 1.07994 * 120.00619 * 359.97438 * 15 14 13 17 17 C 1.37883 * 119.99740 * 179.97438 * 15 14 13 18 18 N 1.31514 * 120.00267 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00049 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46969 * 0.02562 * 19 17 15 21 21 H 1.48494 * 109.47560 * 119.99954 * 19 17 15 22 22 H 1.48502 * 109.47404 * 240.00075 * 19 17 15 23 23 C 1.38751 * 119.99161 * 0.02562 * 7 5 4 24 24 C 1.38525 * 119.95592 * 359.97438 * 23 7 5 25 25 O 1.36041 * 120.01883 * 180.02562 * 24 23 7 26 26 C 1.42899 * 117.00002 * 0.02562 * 25 24 23 27 27 H 1.09003 * 109.46887 * 60.00415 * 1 2 3 28 28 H 1.09004 * 109.47066 * 180.02562 * 1 2 3 29 29 H 1.08992 * 109.47219 * 300.00400 * 1 2 3 30 30 H 1.07995 * 119.98156 * 0.25994 * 4 3 2 31 31 H 0.97004 * 120.00225 * 24.81043 * 8 7 5 32 32 H 0.97006 * 119.99725 * 0.02562 * 11 9 8 33 33 H 1.09005 * 109.46624 * 300.00035 * 12 11 9 34 34 H 1.08996 * 109.46851 * 59.99980 * 12 11 9 35 35 H 1.09010 * 109.47289 * 299.99949 * 13 12 11 36 36 H 1.09002 * 109.47431 * 59.99706 * 13 12 11 37 37 H 1.09005 * 109.46426 * 299.99906 * 14 13 12 38 38 H 1.09002 * 109.47156 * 59.99461 * 14 13 12 39 39 H 0.97001 * 120.00389 * 179.97438 * 18 17 15 40 40 H 1.08001 * 120.02155 * 180.02562 * 23 7 5 41 41 H 1.09002 * 109.47215 * 59.99676 * 26 25 24 42 42 H 1.08998 * 109.47384 * 180.02562 * 26 25 24 43 43 H 1.09004 * 109.46655 * 299.99991 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0468 1.2122 0.0000 4 6 1.2918 2.3746 -0.0005 5 6 1.9189 3.6076 0.0000 6 9 1.1817 4.7398 0.0000 7 6 3.3069 3.6823 0.0016 8 7 3.9420 4.9330 0.0016 9 6 5.1923 5.0539 -0.4867 10 8 5.7312 4.1033 -1.0201 11 7 5.8454 6.2284 -0.3837 12 6 7.2043 6.3599 -0.9150 13 6 7.7121 7.7822 -0.6701 14 6 9.1311 7.9198 -1.2255 15 6 9.6310 9.3209 -0.9849 16 1 8.9998 10.0414 -0.4861 17 6 10.8945 9.6831 -1.4015 18 7 11.6636 8.8057 -2.0085 19 14 11.5140 11.4200 -1.1039 20 1 10.4651 12.2071 -0.4072 21 1 12.7368 11.3722 -0.2627 22 1 11.8329 12.0616 -2.4047 23 6 4.0641 2.5197 0.0022 24 6 3.4359 1.2850 0.0016 25 8 4.1771 0.1443 0.0027 26 6 5.5982 0.2939 0.0049 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 0.2134 2.3176 0.0033 31 1 3.4813 5.7109 0.3531 32 1 5.4156 6.9866 0.0422 33 1 7.8608 5.6487 -0.4136 34 1 7.1972 6.1555 -1.9856 35 1 7.0557 8.4937 -1.1712 36 1 7.7193 7.9862 0.4006 37 1 9.7878 7.2083 -0.7248 38 1 9.1236 7.7160 -2.2963 39 1 12.5523 9.0606 -2.3019 40 1 5.1426 2.5772 0.0038 41 1 5.9044 0.8430 0.8954 42 1 6.0672 -0.6900 0.0051 43 1 5.9070 0.8431 -0.8846 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171538254.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:50 Heat of formation + Delta-G solvation = -147.518930 kcal Electronic energy + Delta-G solvation = -26919.497552 eV Core-core repulsion = 22686.382611 eV Total energy + Delta-G solvation = -4233.114940 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.147 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.97512 -42.03363 -41.08478 -39.46518 -38.23571 -36.93092 -35.50639 -35.16659 -33.03415 -31.16757 -30.55195 -28.67388 -28.10648 -27.75142 -25.15661 -23.82121 -23.39215 -22.37210 -21.90940 -20.09357 -19.49693 -19.09549 -18.50689 -18.07986 -17.78382 -17.31164 -17.02320 -16.71374 -16.49922 -16.47581 -16.17056 -16.01979 -15.78364 -15.56856 -15.49891 -15.18576 -14.41017 -14.27620 -13.78663 -13.74441 -13.65069 -13.45868 -13.22368 -12.79944 -12.63995 -12.54610 -12.44684 -12.36080 -12.33948 -12.11117 -11.68111 -11.60821 -11.29521 -11.15292 -10.92919 -10.55572 -10.20162 -9.68055 -8.62115 -8.19439 -6.30384 -0.01968 0.01834 1.34936 1.41782 1.42518 1.55118 1.85712 2.21249 2.26952 2.41825 2.45402 3.01609 3.05469 3.14629 3.55024 3.87659 3.98023 4.14045 4.23038 4.23397 4.33861 4.35894 4.38644 4.45758 4.55698 4.59492 4.69819 4.75552 4.84560 4.93450 4.95209 4.95927 5.14303 5.17375 5.38689 5.53034 5.57123 5.72120 5.76110 5.85310 5.98115 6.23126 6.45791 6.82437 6.87963 7.30980 7.39170 8.92694 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.025460 B = 0.002040 C = 0.001904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.485821 B =13724.599635 C =14704.857368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.321 6.321 3 C 0.101 3.899 4 C -0.174 4.174 5 C 0.065 3.935 6 F -0.132 7.132 7 C 0.137 3.863 8 N -0.668 5.668 9 C 0.701 3.299 10 O -0.609 6.609 11 N -0.720 5.720 12 C 0.149 3.851 13 C -0.102 4.102 14 C 0.023 3.977 15 C -0.539 4.539 16 H 0.066 0.934 17 C -0.004 4.004 18 N -0.934 5.934 19 Si 0.966 3.034 20 H -0.259 1.259 21 H -0.281 1.281 22 H -0.281 1.281 23 C -0.174 4.174 24 C 0.100 3.900 25 O -0.316 6.316 26 C 0.022 3.978 27 H 0.068 0.932 28 H 0.120 0.880 29 H 0.071 0.929 30 H 0.182 0.818 31 H 0.425 0.575 32 H 0.415 0.585 33 H 0.055 0.945 34 H 0.052 0.948 35 H 0.068 0.932 36 H 0.069 0.931 37 H -0.006 1.006 38 H -0.007 1.007 39 H 0.263 0.737 40 H 0.160 0.840 41 H 0.058 0.942 42 H 0.126 0.874 43 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.653 -15.210 7.458 30.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.235 6.235 3 C 0.054 3.946 4 C -0.194 4.194 5 C 0.043 3.957 6 F -0.111 7.111 7 C 0.040 3.960 8 N -0.316 5.316 9 C 0.401 3.599 10 O -0.488 6.488 11 N -0.374 5.374 12 C 0.025 3.975 13 C -0.140 4.140 14 C -0.015 4.015 15 C -0.577 4.577 16 H 0.084 0.916 17 C -0.202 4.202 18 N -0.575 5.575 19 Si 0.791 3.209 20 H -0.182 1.182 21 H -0.206 1.206 22 H -0.207 1.207 23 C -0.195 4.195 24 C 0.053 3.947 25 O -0.230 6.230 26 C -0.072 4.072 27 H 0.087 0.913 28 H 0.138 0.862 29 H 0.090 0.910 30 H 0.199 0.801 31 H 0.264 0.736 32 H 0.252 0.748 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.013 0.987 38 H 0.012 0.988 39 H 0.072 0.928 40 H 0.177 0.823 41 H 0.077 0.923 42 H 0.145 0.855 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -24.936 -16.344 6.914 30.606 hybrid contribution 0.440 1.957 0.130 2.010 sum -24.496 -14.388 7.043 29.269 Atomic orbital electron populations 1.23462 0.76086 1.05966 1.02669 1.86205 1.23592 1.24838 1.88849 1.17951 0.88586 0.85694 1.02348 1.20957 1.02229 0.88505 1.07674 1.16821 0.86128 0.82937 1.09828 1.91487 1.76406 1.48683 1.94491 1.17227 0.89549 0.85455 1.03771 1.42307 1.14840 1.09936 1.64548 1.16010 0.80967 0.83895 0.78983 1.90861 1.68443 1.39384 1.50158 1.45064 1.16952 1.12204 1.63230 1.21181 0.80327 0.97981 0.98046 1.21606 0.97173 0.93676 1.01552 1.18946 0.91932 0.95721 0.94867 1.21713 1.00201 0.98069 1.37756 0.91551 1.26011 0.97371 1.01850 0.94931 1.70110 1.09869 1.36515 1.40956 0.85383 0.78363 0.79301 0.77886 1.18241 1.20642 1.20679 1.21223 1.02312 0.89278 1.06692 1.18309 0.88922 0.86001 1.01449 1.86136 1.20329 1.27790 1.88745 1.23287 0.76895 1.05335 1.01714 0.91345 0.86216 0.91029 0.80103 0.73617 0.74838 0.92683 0.92996 0.91359 0.91218 0.98721 0.98849 0.92843 0.82324 0.92292 0.85545 0.93018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 9.81 113.37 1.11 1.22 16 2 O -0.32 -6.26 10.28 -80.19 -0.82 -7.08 16 3 C 0.10 2.16 6.70 22.56 0.15 2.31 16 4 C -0.17 -3.00 9.01 22.38 0.20 -2.80 16 5 C 0.07 1.32 7.30 22.47 0.16 1.48 16 6 F -0.13 -2.47 16.80 44.97 0.76 -1.72 16 7 C 0.14 3.28 6.44 38.10 0.25 3.53 16 8 N -0.67 -14.81 5.32 -316.90 -1.69 -16.49 16 9 C 0.70 19.90 8.37 179.06 1.50 21.40 16 10 O -0.61 -21.82 13.51 -4.03 -0.05 -21.88 16 11 N -0.72 -18.56 5.56 -478.52 -2.66 -21.22 16 12 C 0.15 4.94 5.67 86.38 0.49 5.43 16 13 C -0.10 -3.74 5.27 30.59 0.16 -3.58 16 14 C 0.02 1.17 4.97 29.85 0.15 1.32 16 15 C -0.54 -29.55 9.11 25.60 0.23 -29.32 16 16 H 0.07 3.42 7.74 -2.91 -0.02 3.40 16 17 C 0.00 -0.23 5.46 84.66 0.46 0.24 16 18 N -0.93 -56.40 13.29 21.45 0.28 -56.12 16 19 Si 0.97 43.36 29.54 68.60 2.03 45.39 16 20 H -0.26 -10.90 7.11 99.48 0.71 -10.20 16 21 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 22 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 23 C -0.17 -4.58 7.70 22.46 0.17 -4.40 16 24 C 0.10 2.52 6.70 22.55 0.15 2.67 16 25 O -0.32 -7.96 10.28 -80.01 -0.82 -8.79 16 26 C 0.02 0.44 9.81 113.37 1.11 1.55 16 27 H 0.07 0.45 7.66 -2.39 -0.02 0.43 16 28 H 0.12 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.07 0.42 7.66 -2.39 -0.02 0.40 16 30 H 0.18 1.86 6.29 -2.91 -0.02 1.85 16 31 H 0.43 6.65 8.47 -92.70 -0.78 5.86 16 32 H 0.41 7.81 8.49 -92.70 -0.79 7.02 16 33 H 0.05 1.96 8.14 -2.38 -0.02 1.94 16 34 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.07 2.34 8.14 -2.38 -0.02 2.32 16 36 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 37 H -0.01 -0.31 8.14 -2.38 -0.02 -0.33 16 38 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 39 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 40 H 0.16 4.67 4.02 -2.91 -0.01 4.65 16 41 H 0.06 1.12 7.66 -2.39 -0.02 1.10 16 42 H 0.13 1.78 8.14 -2.39 -0.02 1.76 16 43 H 0.05 1.15 7.66 -2.38 -0.02 1.13 16 Total: -1.00 -73.14 367.32 2.82 -70.32 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: -0.50 Total: 16.54 kcal Atomic # 6 Polarization: -5.26 SS G_CDS: 6.30 Total: 1.05 kcal Atomic # 7 Polarization: -89.77 SS G_CDS: -4.06 Total: -93.83 kcal Atomic # 8 Polarization: -36.04 SS G_CDS: -1.70 Total: -37.74 kcal Atomic # 9 Polarization: -2.47 SS G_CDS: 0.76 Total: -1.72 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Total: -73.14 2.82 -70.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171538254.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.197 kcal (2) G-P(sol) polarization free energy of solvation -73.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds