Wall clock time and date at job start Tue Mar 31 2020 14:53:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00429 * 2 1 4 4 H 1.48506 * 109.46711 * 0.02562 * 3 2 1 5 5 H 1.48501 * 109.47495 * 119.99446 * 3 2 1 6 6 H 1.48496 * 109.47549 * 240.00038 * 3 2 1 7 7 C 1.37885 * 119.99870 * 180.27303 * 2 1 3 8 8 H 1.07998 * 119.99746 * 179.72502 * 7 2 1 9 9 C 1.50701 * 120.00086 * 359.72944 * 7 2 1 10 10 N 1.46498 * 109.47177 * 179.97438 * 9 7 2 11 11 C 1.34960 * 125.97368 * 124.71561 * 10 9 7 12 12 C 1.35250 * 107.85632 * 179.83942 * 11 10 9 13 13 C 1.40404 * 107.86702 * 0.42114 * 12 11 10 14 14 N 1.40180 * 125.97406 * 179.74218 * 13 12 11 15 15 C 1.34781 * 119.99746 * 0.02562 * 14 13 12 16 16 O 1.21592 * 120.00235 * 0.02562 * 15 14 13 17 17 N 1.34773 * 119.99788 * 179.97438 * 15 14 13 18 18 C 1.39940 * 119.99856 * 175.37183 * 17 15 14 19 19 C 1.38887 * 120.10446 * 35.08531 * 18 17 15 20 20 C 1.37969 * 119.86160 * 179.97438 * 19 18 17 21 21 C 1.38569 * 120.31192 * 0.02562 * 20 19 18 22 22 C 1.38284 * 119.95825 * 359.97438 * 21 20 19 23 23 C 1.38387 * 119.91963 * 359.72397 * 22 21 20 24 24 C 1.51379 * 109.75193 * 180.02562 * 22 21 20 25 25 C 1.54336 * 105.17233 * 342.79388 * 24 22 21 26 26 C 1.51395 * 130.30714 * 180.02562 * 21 20 19 27 27 N 1.31214 * 108.05347 * 359.73897 * 13 12 11 28 28 H 0.97000 * 120.00019 * 179.97438 * 1 2 3 29 29 H 1.09008 * 109.46727 * 299.99967 * 9 7 2 30 30 H 1.08994 * 109.46852 * 59.99226 * 9 7 2 31 31 H 1.08003 * 126.07296 * 359.96146 * 11 10 9 32 32 H 1.08002 * 126.06130 * 180.16571 * 12 11 10 33 33 H 0.96994 * 120.00599 * 180.02562 * 14 13 12 34 34 H 0.97004 * 120.00319 * 355.37928 * 17 15 14 35 35 H 1.07994 * 120.07176 * 0.02562 * 19 18 17 36 36 H 1.07996 * 119.85003 * 179.97438 * 20 19 18 37 37 H 1.07998 * 119.91807 * 180.27573 * 23 22 21 38 38 H 1.09008 * 110.30209 * 223.87605 * 24 22 21 39 39 H 1.08997 * 110.39381 * 101.76583 * 24 22 21 40 40 H 1.09003 * 110.82520 * 268.15364 * 25 24 22 41 41 H 1.09000 * 110.99195 * 144.68466 * 25 24 22 42 42 H 1.09001 * 110.29983 * 316.10319 * 26 21 20 43 43 H 1.08999 * 110.30163 * 78.25108 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 1.2842 2.7464 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1030 1.6964 -1.2124 7 6 2.0045 -1.1941 -0.0057 8 1 3.0845 -1.1941 -0.0102 9 6 1.2510 -2.4992 -0.0057 10 7 2.2030 -3.6127 -0.0129 11 6 2.2494 -4.6219 0.8820 12 6 3.2629 -5.4443 0.5275 13 6 3.8663 -4.9130 -0.6236 14 7 4.9594 -5.4619 -1.3083 15 6 5.5254 -6.6035 -0.8691 16 8 5.0876 -7.1576 0.1207 17 7 6.5760 -7.1315 -1.5278 18 6 7.2248 -8.2620 -1.0184 19 6 6.4973 -9.2455 -0.3608 20 6 7.1419 -10.3582 0.1389 21 6 8.5122 -10.4992 -0.0116 22 6 9.2392 -9.5216 -0.6659 23 6 8.5957 -8.4069 -1.1742 24 6 10.7024 -9.9081 -0.6986 25 6 10.8556 -11.0016 0.3797 26 6 9.4379 -11.6090 0.4393 27 7 3.2280 -3.8129 -0.9464 28 1 -0.4850 -0.8400 -0.0004 29 1 0.6280 -2.5591 0.8867 30 1 0.6207 -2.5547 -0.8932 31 1 1.5925 -4.7510 1.7295 32 1 3.5585 -6.3470 1.0414 33 1 5.3084 -5.0201 -2.0982 34 1 6.8826 -6.7278 -2.3548 35 1 5.4292 -9.1399 -0.2416 36 1 6.5761 -11.1227 0.6506 37 1 9.1629 -7.6456 -1.6891 38 1 11.3263 -9.0477 -0.4560 39 1 10.9690 -10.3034 -1.6787 40 1 11.1304 -10.5637 1.3393 41 1 11.5857 -11.7513 0.0746 42 1 9.1982 -11.9106 1.4590 43 1 9.3629 -12.4617 -0.2356 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000173376906.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:44 Heat of formation + Delta-G solvation = 60.338384 kcal Electronic energy + Delta-G solvation = -25733.292158 eV Core-core repulsion = 21972.252563 eV Total energy + Delta-G solvation = -3761.039595 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.46800 -41.63430 -40.51875 -37.47729 -36.35515 -35.65303 -34.77901 -32.69572 -32.06003 -31.05170 -29.29364 -28.35132 -27.80801 -25.24758 -23.90356 -23.64613 -22.45367 -21.67900 -21.56112 -21.17239 -19.44502 -19.23823 -18.52280 -17.72528 -17.07900 -16.72463 -16.51485 -16.37722 -16.05495 -16.00988 -15.67761 -15.39217 -15.01371 -14.60564 -14.24585 -14.19905 -13.94566 -13.73849 -13.65997 -13.59481 -13.24621 -12.88472 -12.62491 -12.53021 -12.19172 -12.02755 -11.97803 -11.95878 -11.71426 -11.63053 -11.25088 -11.01648 -10.94456 -10.69783 -9.87745 -9.68992 -9.27848 -8.91475 -8.76761 -6.56135 0.26771 0.44165 0.92751 0.96938 1.50726 1.56899 1.57469 1.78476 1.93596 2.24013 2.48231 2.80652 2.94192 3.00947 3.57220 3.69905 3.82216 4.07631 4.11511 4.22920 4.23911 4.36109 4.42725 4.53782 4.54443 4.64057 4.76233 4.78598 4.82572 4.89786 4.96449 4.99978 5.05856 5.12999 5.23872 5.34632 5.37716 5.40236 5.53511 5.56534 5.71188 5.74070 5.82046 5.92326 6.08421 6.25916 6.40630 6.57110 6.98684 7.19403 7.22713 8.58092 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.029302 B = 0.001998 C = 0.001924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.321129 B =14012.333900 C =14545.790602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.020 4.020 3 Si 1.120 2.880 4 H -0.275 1.275 5 H -0.272 1.272 6 H -0.275 1.275 7 C -0.621 4.621 8 H 0.045 0.955 9 C 0.259 3.741 10 N -0.343 5.343 11 C 0.056 3.944 12 C -0.289 4.289 13 C 0.286 3.714 14 N -0.630 5.630 15 C 0.714 3.286 16 O -0.579 6.579 17 N -0.662 5.662 18 C 0.148 3.852 19 C -0.139 4.139 20 C -0.099 4.099 21 C -0.123 4.123 22 C -0.089 4.089 23 C -0.133 4.133 24 C -0.079 4.079 25 C -0.118 4.118 26 C -0.081 4.081 27 N -0.344 5.344 28 H 0.261 0.739 29 H 0.055 0.945 30 H 0.017 0.983 31 H 0.202 0.798 32 H 0.169 0.831 33 H 0.424 0.576 34 H 0.426 0.574 35 H 0.122 0.878 36 H 0.132 0.868 37 H 0.145 0.855 38 H 0.082 0.918 39 H 0.094 0.906 40 H 0.071 0.929 41 H 0.097 0.903 42 H 0.078 0.922 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.053 -23.131 -2.512 32.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.219 4.219 3 Si 0.941 3.059 4 H -0.200 1.200 5 H -0.197 1.197 6 H -0.200 1.200 7 C -0.659 4.659 8 H 0.064 0.936 9 C 0.140 3.860 10 N -0.125 5.125 11 C -0.092 4.092 12 C -0.320 4.320 13 C 0.030 3.970 14 N -0.281 5.281 15 C 0.414 3.586 16 O -0.455 6.455 17 N -0.311 5.311 18 C 0.054 3.946 19 C -0.159 4.159 20 C -0.118 4.118 21 C -0.124 4.124 22 C -0.090 4.090 23 C -0.153 4.153 24 C -0.116 4.116 25 C -0.155 4.155 26 C -0.118 4.118 27 N -0.175 5.175 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.035 0.965 31 H 0.219 0.781 32 H 0.187 0.813 33 H 0.262 0.738 34 H 0.265 0.735 35 H 0.140 0.860 36 H 0.150 0.850 37 H 0.163 0.837 38 H 0.101 0.899 39 H 0.112 0.888 40 H 0.090 0.910 41 H 0.115 0.885 42 H 0.097 0.903 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 21.281 -20.889 -2.467 29.922 hybrid contribution -0.295 -1.640 -0.277 1.690 sum 20.986 -22.530 -2.745 30.912 Atomic orbital electron populations 1.70946 1.07440 1.30179 1.47311 1.27283 0.96456 1.06085 0.92106 0.82876 0.74135 0.71113 0.77797 1.20009 1.19689 1.20021 1.22284 0.94679 0.92112 1.56856 0.93641 1.19435 0.86411 0.82763 0.97427 1.48559 1.24061 1.20184 1.19662 1.23175 1.00583 0.88737 0.96668 1.21707 1.02153 1.06532 1.01619 1.19020 0.90820 0.92983 0.94153 1.41263 1.30539 1.24752 1.31596 1.15672 0.80422 0.79905 0.82641 1.90849 1.64430 1.62310 1.27956 1.42177 1.31562 1.29761 1.27649 1.17424 0.91275 0.86260 0.99634 1.21206 1.00670 0.93301 1.00754 1.20683 0.93937 0.97430 0.99756 1.20975 0.93550 0.98074 0.99781 1.20730 0.97583 0.93632 0.97037 1.20474 0.91069 0.99690 1.04107 1.21121 0.90145 0.99509 1.00859 1.22331 0.96258 0.97919 0.99017 1.21116 0.92914 0.95719 1.02042 1.77267 1.04857 1.17967 1.17384 0.92965 0.92764 0.96478 0.78129 0.81328 0.73848 0.73515 0.85983 0.84970 0.83698 0.89898 0.88781 0.91014 0.88493 0.90341 0.89188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.02 13.65 21.45 0.29 -53.73 16 2 C -0.02 -1.10 5.46 84.66 0.46 -0.64 16 3 Si 1.12 49.75 29.90 68.60 2.05 51.80 16 4 H -0.28 -11.93 7.11 99.48 0.71 -11.23 16 5 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 6 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 7 C -0.62 -35.43 9.24 25.60 0.24 -35.19 16 8 H 0.05 2.71 7.81 -2.91 -0.02 2.69 16 9 C 0.26 13.36 5.57 85.63 0.48 13.84 16 10 N -0.34 -16.18 3.67 -351.84 -1.29 -17.47 16 11 C 0.06 2.24 11.44 83.52 0.96 3.20 16 12 C -0.29 -11.39 9.61 22.11 0.21 -11.18 16 13 C 0.29 11.43 8.11 133.32 1.08 12.51 16 14 N -0.63 -18.91 5.45 -321.23 -1.75 -20.66 16 15 C 0.71 20.58 8.38 179.05 1.50 22.08 16 16 O -0.58 -20.46 10.91 -4.01 -0.04 -20.50 16 17 N -0.66 -13.61 5.34 -317.26 -1.70 -15.31 16 18 C 0.15 3.28 6.30 38.12 0.24 3.52 16 19 C -0.14 -3.46 8.69 22.36 0.19 -3.26 16 20 C -0.10 -2.07 10.03 22.28 0.22 -1.84 16 21 C -0.12 -2.15 6.14 -19.55 -0.12 -2.27 16 22 C -0.09 -1.46 6.13 -19.60 -0.12 -1.58 16 23 C -0.13 -2.33 9.96 22.42 0.22 -2.11 16 24 C -0.08 -0.80 6.77 30.52 0.21 -0.59 16 25 C -0.12 -0.99 7.08 31.51 0.22 -0.76 16 26 C -0.08 -0.91 6.77 30.53 0.21 -0.70 16 27 N -0.34 -16.05 12.42 -54.44 -0.68 -16.73 16 28 H 0.26 15.10 7.22 -92.71 -0.67 14.43 16 29 H 0.05 2.68 7.94 -2.38 -0.02 2.66 16 30 H 0.02 0.94 8.00 -2.39 -0.02 0.92 16 31 H 0.20 6.28 8.06 -2.91 -0.02 6.25 16 32 H 0.17 6.47 5.91 -2.91 -0.02 6.45 16 33 H 0.42 9.88 8.84 -92.71 -0.82 9.06 16 34 H 0.43 5.42 8.84 -92.71 -0.82 4.60 16 35 H 0.12 3.55 6.23 -2.91 -0.02 3.53 16 36 H 0.13 2.32 8.06 -2.91 -0.02 2.29 16 37 H 0.15 1.80 8.06 -2.91 -0.02 1.78 16 38 H 0.08 0.72 8.14 -2.38 -0.02 0.70 16 39 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 41 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 42 H 0.08 0.81 8.14 -2.39 -0.02 0.80 16 43 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 Total: -1.00 -74.38 362.15 2.62 -71.76 By element: Atomic # 1 Polarization: 26.31 SS G_CDS: -0.47 Total: 25.84 kcal Atomic # 6 Polarization: -11.19 SS G_CDS: 6.20 Total: -4.99 kcal Atomic # 7 Polarization: -118.78 SS G_CDS: -5.12 Total: -123.91 kcal Atomic # 8 Polarization: -20.46 SS G_CDS: -0.04 Total: -20.50 kcal Atomic # 14 Polarization: 49.75 SS G_CDS: 2.05 Total: 51.80 kcal Total: -74.38 2.62 -71.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173376906.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.097 kcal (2) G-P(sol) polarization free energy of solvation -74.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds