Wall clock time and date at job start Tue Mar 31 2020 14:18:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46503 * 120.00340 * 2 1 4 4 C 1.50704 * 109.46678 * 269.99715 * 3 2 1 5 5 H 1.07997 * 120.00396 * 359.97438 * 4 3 2 6 6 C 1.37877 * 119.99855 * 179.97438 * 4 3 2 7 7 N 1.31518 * 120.00054 * 359.97438 * 6 4 3 8 8 Si 1.86804 * 120.00183 * 180.02562 * 6 4 3 9 9 H 1.48493 * 109.47091 * 59.99527 * 8 6 4 10 10 H 1.48499 * 109.47290 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.46758 * 299.99591 * 8 6 4 12 12 C 1.34776 * 120.00122 * 179.97438 * 2 1 3 13 13 O 1.21590 * 120.00262 * 180.02562 * 12 2 1 14 14 N 1.34778 * 119.99512 * 359.97438 * 12 2 1 15 15 C 1.40141 * 119.99753 * 184.49071 * 14 12 2 16 16 C 1.38842 * 120.01241 * 33.74837 * 15 14 12 17 17 C 1.38082 * 119.98919 * 179.74363 * 16 15 14 18 18 C 1.38743 * 120.01206 * 0.25354 * 17 16 15 19 19 O 1.35959 * 119.98824 * 180.02562 * 18 17 16 20 20 C 1.35875 * 117.99696 * 256.12938 * 19 18 17 21 21 C 1.38762 * 120.06058 * 359.51984 * 20 19 18 22 22 C 1.38138 * 119.94037 * 179.81068 * 21 20 19 23 23 C 1.38270 * 120.05910 * 0.44708 * 22 21 20 24 24 C 1.38270 * 120.11677 * 359.77872 * 23 22 21 25 25 C 1.38132 * 120.05965 * 0.02562 * 24 23 22 26 26 C 1.38749 * 120.02269 * 0.02562 * 18 17 16 27 27 C 1.38081 * 120.01213 * 359.95835 * 26 18 17 28 28 H 1.08998 * 109.47274 * 270.00992 * 1 2 3 29 29 H 1.09008 * 109.46946 * 30.00046 * 1 2 3 30 30 H 1.08993 * 109.47332 * 150.00192 * 1 2 3 31 31 H 1.08995 * 109.47270 * 29.99417 * 3 2 1 32 32 H 1.08998 * 109.47396 * 150.00312 * 3 2 1 33 33 H 0.97001 * 119.99824 * 180.02562 * 7 6 4 34 34 H 0.96997 * 120.00008 * 4.49821 * 14 12 2 35 35 H 1.08001 * 120.00217 * 0.02562 * 16 15 14 36 36 H 1.08001 * 119.99720 * 180.28001 * 17 16 15 37 37 H 1.07996 * 120.02685 * 0.02562 * 21 20 19 38 38 H 1.07999 * 119.96981 * 180.20982 * 22 21 20 39 39 H 1.07999 * 119.94286 * 179.76994 * 23 22 21 40 40 H 1.08003 * 119.97224 * 179.97438 * 24 23 22 41 41 H 1.07998 * 120.03094 * 179.97438 * 25 24 23 42 42 H 1.07999 * 119.98956 * 179.97438 * 26 18 17 43 43 H 1.07997 * 120.00956 * 180.02562 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4488 1.7036 -1.4209 5 1 2.0982 1.0956 -2.2417 6 6 3.1261 2.8778 -1.6729 7 7 3.5526 3.6185 -0.6733 8 14 3.4369 3.4173 -3.4341 9 1 2.1392 3.5944 -4.1339 10 1 4.1785 4.7038 -3.4342 11 1 4.2397 2.3827 -4.1343 12 6 2.1389 -1.1672 0.0005 13 8 3.3548 -1.1672 0.0010 14 7 1.4649 -2.3343 0.0016 15 6 2.1624 -3.5461 0.0971 16 6 3.3274 -3.6194 0.8488 17 6 4.0114 -4.8149 0.9470 18 6 3.5375 -5.9415 0.2903 19 8 4.2111 -7.1184 0.3878 20 6 4.9607 -7.5142 -0.6742 21 6 5.0145 -6.7300 -1.8177 22 6 5.7805 -7.1327 -2.8945 23 6 6.4857 -8.3206 -2.8370 24 6 6.4301 -9.1062 -1.7005 25 6 5.6689 -8.7062 -0.6194 26 6 2.3765 -5.8674 -0.4657 27 6 1.6915 -4.6725 -0.5643 28 1 -0.3634 0.0002 1.0276 29 1 -0.3633 0.8900 -0.5139 30 1 -0.3633 -0.8899 -0.5138 31 1 1.6085 2.0284 0.5137 32 1 3.1500 1.1384 0.5138 33 1 4.0288 4.4447 -0.8507 34 1 0.4971 -2.3356 -0.0639 35 1 3.6961 -2.7426 1.3604 36 1 4.9152 -4.8731 1.5353 37 1 4.4609 -5.8039 -1.8645 38 1 5.8255 -6.5210 -3.7834 39 1 7.0810 -8.6355 -3.6813 40 1 6.9815 -10.0339 -1.6583 41 1 5.6254 -9.3204 0.2678 42 1 2.0083 -6.7446 -0.9769 43 1 0.7876 -4.6150 -1.1524 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176539766.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:16 Heat of formation + Delta-G solvation = 11.077209 kcal Electronic energy + Delta-G solvation = -26252.655094 eV Core-core repulsion = 22457.186623 eV Total energy + Delta-G solvation = -3795.468471 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.01797 -40.08085 -38.54502 -37.32202 -34.99473 -34.21930 -32.56511 -31.20187 -31.05125 -30.31659 -28.75904 -27.60209 -25.85330 -23.83478 -23.16804 -22.72438 -22.64856 -21.37066 -19.57532 -18.75401 -18.01776 -17.09480 -16.85239 -16.57161 -16.04572 -15.91500 -15.08653 -14.89165 -14.64931 -14.45665 -14.24837 -13.88313 -13.66106 -13.59819 -13.49723 -13.26204 -12.92847 -12.58977 -12.41912 -12.21929 -12.06550 -11.90572 -11.78811 -11.24293 -11.22737 -10.96775 -10.95856 -10.61107 -10.20244 -10.07058 -9.68291 -9.43406 -9.18857 -8.98471 -8.46763 -8.43522 -8.02240 -7.65667 -6.07949 -4.12962 1.04958 1.15980 1.26467 1.33061 2.95342 3.15752 3.29641 3.34393 3.38054 3.59154 3.64394 3.94456 4.33623 4.46483 4.68405 4.75090 4.81986 4.86972 4.98655 5.15731 5.20937 5.26170 5.28131 5.37635 5.42111 5.47253 5.61962 5.77947 5.81751 5.91972 5.99561 6.05599 6.14444 6.24550 6.29591 6.32736 6.35735 6.52033 6.69011 6.73185 7.01988 7.27338 7.41544 7.53798 7.57886 7.89035 8.17884 8.46783 8.86852 9.12836 9.52390 10.99958 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.014934 B = 0.002665 C = 0.002396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.498350 B =10505.511745 C =11685.254861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.610 5.610 3 C 0.259 3.741 4 C -0.529 4.529 5 H 0.056 0.944 6 C 0.062 3.938 7 N -0.895 5.895 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.276 1.276 12 C 0.696 3.304 13 O -0.566 6.566 14 N -0.696 5.696 15 C 0.190 3.810 16 C -0.108 4.108 17 C -0.096 4.096 18 C 0.047 3.953 19 O -0.256 6.256 20 C 0.124 3.876 21 C -0.193 4.193 22 C -0.081 4.081 23 C -0.158 4.158 24 C -0.086 4.086 25 C -0.151 4.151 26 C -0.110 4.110 27 C -0.144 4.144 28 H 0.047 0.953 29 H 0.079 0.921 30 H 0.050 0.950 31 H 0.036 0.964 32 H 0.046 0.954 33 H 0.264 0.736 34 H 0.403 0.597 35 H 0.148 0.852 36 H 0.132 0.868 37 H 0.132 0.868 38 H 0.125 0.875 39 H 0.122 0.878 40 H 0.128 0.872 41 H 0.130 0.870 42 H 0.130 0.870 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.022 -22.586 0.463 22.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.346 5.346 3 C 0.140 3.860 4 C -0.568 4.568 5 H 0.074 0.926 6 C -0.140 4.140 7 N -0.533 5.533 8 Si 0.726 3.274 9 H -0.203 1.203 10 H -0.211 1.211 11 H -0.202 1.202 12 C 0.398 3.602 13 O -0.442 6.442 14 N -0.346 5.346 15 C 0.093 3.907 16 C -0.128 4.128 17 C -0.115 4.115 18 C 0.004 3.996 19 O -0.168 6.168 20 C 0.081 3.919 21 C -0.211 4.211 22 C -0.100 4.100 23 C -0.177 4.177 24 C -0.104 4.104 25 C -0.170 4.170 26 C -0.129 4.129 27 C -0.165 4.165 28 H 0.065 0.935 29 H 0.098 0.902 30 H 0.068 0.932 31 H 0.054 0.946 32 H 0.064 0.936 33 H 0.074 0.926 34 H 0.240 0.760 35 H 0.166 0.834 36 H 0.150 0.850 37 H 0.150 0.850 38 H 0.143 0.857 39 H 0.140 0.860 40 H 0.146 0.854 41 H 0.148 0.852 42 H 0.148 0.852 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -2.085 -22.325 0.700 22.433 hybrid contribution -0.452 0.581 -1.242 1.444 sum -2.537 -21.744 -0.542 21.898 Atomic orbital electron populations 1.21610 0.81562 1.02424 1.00530 1.47531 1.05814 1.06327 1.74884 1.19274 0.92388 0.76751 0.97559 1.21398 1.36794 1.06305 0.92291 0.92562 1.24925 0.95280 0.96347 0.97473 1.69917 1.38273 1.14340 1.30803 0.86552 0.78364 0.77851 0.84618 1.20272 1.21122 1.20167 1.15936 0.85603 0.80059 0.78625 1.90917 1.11237 1.85470 1.56527 1.43113 1.10014 1.03681 1.77794 1.17665 0.93616 0.85006 0.94403 1.21186 0.95239 0.97895 0.98499 1.21108 1.00008 0.90376 1.00052 1.18507 0.93273 0.84971 1.02809 1.84411 1.58711 1.36205 1.37504 1.19281 0.91983 0.94044 0.86605 1.21450 1.03988 1.01654 0.94045 1.21020 0.95036 0.96015 0.97891 1.21091 1.01974 0.95831 0.98766 1.20939 0.97526 0.99397 0.92572 1.20414 1.00312 0.95708 1.00538 1.21092 0.94979 0.97901 0.98940 1.20728 1.02512 0.91936 1.01368 0.93478 0.90182 0.93175 0.94644 0.93608 0.92589 0.75957 0.83446 0.84971 0.84996 0.85690 0.85966 0.85423 0.85211 0.85242 0.85157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.22 10.24 59.84 0.61 1.83 16 2 N -0.61 -12.54 2.86 -188.74 -0.54 -13.08 16 3 C 0.26 6.63 5.16 -5.19 -0.03 6.60 16 4 C -0.53 -14.79 9.39 -34.44 -0.32 -15.12 16 5 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 6 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 7 N -0.89 -26.28 13.29 55.43 0.74 -25.54 16 8 Si 0.90 21.72 29.54 -169.99 -5.02 16.70 16 9 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 10 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 C 0.70 14.29 8.03 -86.92 -0.70 13.59 16 13 O -0.57 -13.98 13.60 5.29 0.07 -13.91 16 14 N -0.70 -10.68 5.23 -14.18 -0.07 -10.75 16 15 C 0.19 2.81 6.28 -83.61 -0.53 2.28 16 16 C -0.11 -1.69 8.65 -39.41 -0.34 -2.03 16 17 C -0.10 -1.34 9.98 -39.45 -0.39 -1.74 16 18 C 0.05 0.62 4.50 -39.21 -0.18 0.45 16 19 O -0.26 -3.38 9.98 -3.73 -0.04 -3.42 16 20 C 0.12 1.53 6.62 -39.19 -0.26 1.27 16 21 C -0.19 -2.37 8.95 -39.42 -0.35 -2.73 16 22 C -0.08 -0.87 10.04 -39.61 -0.40 -1.27 16 23 C -0.16 -1.47 10.04 -39.56 -0.40 -1.87 16 24 C -0.09 -0.77 10.04 -39.61 -0.40 -1.17 16 25 C -0.15 -1.57 9.99 -39.43 -0.39 -1.97 16 26 C -0.11 -1.30 8.75 -39.45 -0.35 -1.65 16 27 C -0.14 -1.73 9.96 -39.41 -0.39 -2.13 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.08 1.22 8.07 -51.92 -0.42 0.80 16 30 H 0.05 0.57 6.30 -51.93 -0.33 0.25 16 31 H 0.04 0.91 8.07 -51.93 -0.42 0.49 16 32 H 0.05 1.32 7.42 -51.93 -0.39 0.93 16 33 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 34 H 0.40 4.76 6.52 -40.82 -0.27 4.49 16 35 H 0.15 2.62 6.41 -52.49 -0.34 2.28 16 36 H 0.13 1.67 8.06 -52.49 -0.42 1.25 16 37 H 0.13 1.73 6.23 -52.49 -0.33 1.41 16 38 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 39 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 40 H 0.13 0.79 8.06 -52.48 -0.42 0.37 16 41 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 42 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 43 H 0.13 1.24 8.06 -52.49 -0.42 0.81 16 LS Contribution 367.57 15.07 5.54 5.54 Total: -1.00 -33.42 367.57 -9.64 -43.06 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -5.41 Total: 5.37 kcal Atomic # 6 Polarization: 0.93 SS G_CDS: -4.90 Total: -3.97 kcal Atomic # 7 Polarization: -49.49 SS G_CDS: 0.12 Total: -49.37 kcal Atomic # 8 Polarization: -17.36 SS G_CDS: 0.03 Total: -17.33 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.42 -9.64 -43.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176539766.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.137 kcal (2) G-P(sol) polarization free energy of solvation -33.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds