Wall clock time and date at job start Tue Mar 31 2020 14:18:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46503 * 120.00340 * 2 1 4 4 C 1.50704 * 109.46678 * 269.99715 * 3 2 1 5 5 H 1.07997 * 120.00396 * 359.97438 * 4 3 2 6 6 C 1.37877 * 119.99855 * 179.97438 * 4 3 2 7 7 N 1.31518 * 120.00054 * 359.97438 * 6 4 3 8 8 Si 1.86804 * 120.00183 * 180.02562 * 6 4 3 9 9 H 1.48493 * 109.47091 * 59.99527 * 8 6 4 10 10 H 1.48499 * 109.47290 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.46758 * 299.99591 * 8 6 4 12 12 C 1.34776 * 120.00122 * 179.97438 * 2 1 3 13 13 O 1.21590 * 120.00262 * 180.02562 * 12 2 1 14 14 N 1.34778 * 119.99512 * 359.97438 * 12 2 1 15 15 C 1.40141 * 119.99753 * 184.49071 * 14 12 2 16 16 C 1.38842 * 120.01241 * 33.74837 * 15 14 12 17 17 C 1.38082 * 119.98919 * 179.74363 * 16 15 14 18 18 C 1.38743 * 120.01206 * 0.25354 * 17 16 15 19 19 O 1.35959 * 119.98824 * 180.02562 * 18 17 16 20 20 C 1.35875 * 117.99696 * 256.12938 * 19 18 17 21 21 C 1.38762 * 120.06058 * 359.51984 * 20 19 18 22 22 C 1.38138 * 119.94037 * 179.81068 * 21 20 19 23 23 C 1.38270 * 120.05910 * 0.44708 * 22 21 20 24 24 C 1.38270 * 120.11677 * 359.77872 * 23 22 21 25 25 C 1.38132 * 120.05965 * 0.02562 * 24 23 22 26 26 C 1.38749 * 120.02269 * 0.02562 * 18 17 16 27 27 C 1.38081 * 120.01213 * 359.95835 * 26 18 17 28 28 H 1.08998 * 109.47274 * 270.00992 * 1 2 3 29 29 H 1.09008 * 109.46946 * 30.00046 * 1 2 3 30 30 H 1.08993 * 109.47332 * 150.00192 * 1 2 3 31 31 H 1.08995 * 109.47270 * 29.99417 * 3 2 1 32 32 H 1.08998 * 109.47396 * 150.00312 * 3 2 1 33 33 H 0.97001 * 119.99824 * 180.02562 * 7 6 4 34 34 H 0.96997 * 120.00008 * 4.49821 * 14 12 2 35 35 H 1.08001 * 120.00217 * 0.02562 * 16 15 14 36 36 H 1.08001 * 119.99720 * 180.28001 * 17 16 15 37 37 H 1.07996 * 120.02685 * 0.02562 * 21 20 19 38 38 H 1.07999 * 119.96981 * 180.20982 * 22 21 20 39 39 H 1.07999 * 119.94286 * 179.76994 * 23 22 21 40 40 H 1.08003 * 119.97224 * 179.97438 * 24 23 22 41 41 H 1.07998 * 120.03094 * 179.97438 * 25 24 23 42 42 H 1.07999 * 119.98956 * 179.97438 * 26 18 17 43 43 H 1.07997 * 120.00956 * 180.02562 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4488 1.7036 -1.4209 5 1 2.0982 1.0956 -2.2417 6 6 3.1261 2.8778 -1.6729 7 7 3.5526 3.6185 -0.6733 8 14 3.4369 3.4173 -3.4341 9 1 2.1392 3.5944 -4.1339 10 1 4.1785 4.7038 -3.4342 11 1 4.2397 2.3827 -4.1343 12 6 2.1389 -1.1672 0.0005 13 8 3.3548 -1.1672 0.0010 14 7 1.4649 -2.3343 0.0016 15 6 2.1624 -3.5461 0.0971 16 6 3.3274 -3.6194 0.8488 17 6 4.0114 -4.8149 0.9470 18 6 3.5375 -5.9415 0.2903 19 8 4.2111 -7.1184 0.3878 20 6 4.9607 -7.5142 -0.6742 21 6 5.0145 -6.7300 -1.8177 22 6 5.7805 -7.1327 -2.8945 23 6 6.4857 -8.3206 -2.8370 24 6 6.4301 -9.1062 -1.7005 25 6 5.6689 -8.7062 -0.6194 26 6 2.3765 -5.8674 -0.4657 27 6 1.6915 -4.6725 -0.5643 28 1 -0.3634 0.0002 1.0276 29 1 -0.3633 0.8900 -0.5139 30 1 -0.3633 -0.8899 -0.5138 31 1 1.6085 2.0284 0.5137 32 1 3.1500 1.1384 0.5138 33 1 4.0288 4.4447 -0.8507 34 1 0.4971 -2.3356 -0.0639 35 1 3.6961 -2.7426 1.3604 36 1 4.9152 -4.8731 1.5353 37 1 4.4609 -5.8039 -1.8645 38 1 5.8255 -6.5210 -3.7834 39 1 7.0810 -8.6355 -3.6813 40 1 6.9815 -10.0339 -1.6583 41 1 5.6254 -9.3204 0.2678 42 1 2.0083 -6.7446 -0.9769 43 1 0.7876 -4.6150 -1.1524 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176539766.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:15 Heat of formation + Delta-G solvation = -8.153912 kcal Electronic energy + Delta-G solvation = -26253.489018 eV Core-core repulsion = 22457.186623 eV Total energy + Delta-G solvation = -3796.302395 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.06701 -41.40761 -39.59961 -38.35379 -36.67265 -35.63966 -34.57394 -32.16078 -31.96425 -31.21724 -30.17788 -29.13108 -27.35810 -25.36002 -24.20747 -24.11878 -23.48658 -22.44349 -21.03583 -19.68606 -19.39426 -18.68149 -18.39390 -17.82407 -17.12533 -16.84520 -16.81837 -16.40198 -15.94303 -15.59526 -15.32851 -14.98767 -14.84550 -14.68037 -14.63011 -14.37943 -14.23275 -14.01084 -13.68164 -13.62044 -13.46002 -13.15009 -12.95678 -12.80112 -12.54747 -12.52524 -12.21082 -12.13232 -11.87132 -11.76420 -11.36241 -11.01504 -10.64156 -10.08913 -9.96280 -9.58957 -9.29275 -8.97848 -8.22253 -6.37092 -0.02907 0.25993 0.38107 0.44221 1.36424 1.40613 1.47512 1.63005 1.96207 2.28934 2.38757 2.76419 2.83039 3.01007 3.08000 3.80500 3.85467 3.89801 3.98679 4.16650 4.27112 4.27572 4.33272 4.39631 4.48053 4.52281 4.64129 4.65521 4.80445 4.91540 4.95995 5.00638 5.07506 5.17894 5.24243 5.27891 5.35798 5.38808 5.47822 5.52929 5.58496 5.76057 5.76099 5.96963 6.03839 6.05287 6.57669 6.71217 7.00362 7.29718 7.57908 8.84121 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.014934 B = 0.002665 C = 0.002396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.498350 B =10505.511745 C =11685.254861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.618 5.618 3 C 0.275 3.725 4 C -0.543 4.543 5 H 0.052 0.948 6 C 0.009 3.991 7 N -0.928 5.928 8 Si 0.966 3.034 9 H -0.259 1.259 10 H -0.278 1.278 11 H -0.280 1.280 12 C 0.692 3.308 13 O -0.619 6.619 14 N -0.674 5.674 15 C 0.166 3.834 16 C -0.126 4.126 17 C -0.106 4.106 18 C 0.051 3.949 19 O -0.265 6.265 20 C 0.101 3.899 21 C -0.211 4.211 22 C -0.094 4.094 23 C -0.156 4.156 24 C -0.082 4.082 25 C -0.157 4.157 26 C -0.103 4.103 27 C -0.124 4.124 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.089 0.911 31 H 0.031 0.969 32 H 0.000 1.000 33 H 0.267 0.733 34 H 0.423 0.577 35 H 0.116 0.884 36 H 0.134 0.866 37 H 0.116 0.884 38 H 0.136 0.864 39 H 0.149 0.851 40 H 0.161 0.839 41 H 0.144 0.856 42 H 0.155 0.845 43 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.217 -25.177 -1.617 25.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.353 5.353 3 C 0.154 3.846 4 C -0.582 4.582 5 H 0.070 0.930 6 C -0.191 4.191 7 N -0.567 5.567 8 Si 0.790 3.210 9 H -0.184 1.184 10 H -0.203 1.203 11 H -0.206 1.206 12 C 0.394 3.606 13 O -0.498 6.498 14 N -0.325 5.325 15 C 0.070 3.930 16 C -0.147 4.147 17 C -0.125 4.125 18 C 0.008 3.992 19 O -0.178 6.178 20 C 0.058 3.942 21 C -0.229 4.229 22 C -0.112 4.112 23 C -0.174 4.174 24 C -0.099 4.099 25 C -0.175 4.175 26 C -0.122 4.122 27 C -0.145 4.145 28 H 0.091 0.909 29 H 0.093 0.907 30 H 0.107 0.893 31 H 0.049 0.951 32 H 0.018 0.982 33 H 0.076 0.924 34 H 0.263 0.737 35 H 0.134 0.866 36 H 0.152 0.848 37 H 0.134 0.866 38 H 0.153 0.847 39 H 0.167 0.833 40 H 0.178 0.822 41 H 0.162 0.838 42 H 0.173 0.827 43 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -3.359 -24.966 -1.375 25.229 hybrid contribution -0.016 1.220 -0.570 1.346 sum -3.375 -23.746 -1.945 24.064 Atomic orbital electron populations 1.21927 0.77774 1.04097 1.02754 1.47378 1.08078 1.04812 1.75027 1.18719 0.90978 0.78929 0.96023 1.21677 1.36951 1.06464 0.93090 0.92954 1.25831 0.94916 0.96446 1.01867 1.70037 1.38892 1.14784 1.33018 0.85495 0.78857 0.77306 0.79318 1.18372 1.20343 1.20550 1.16103 0.85099 0.81169 0.78226 1.90882 1.13815 1.86438 1.58706 1.42679 1.10713 1.02222 1.76912 1.17853 0.93900 0.85473 0.95736 1.21005 0.96502 0.97456 0.99690 1.21116 1.00204 0.90397 1.00766 1.18610 0.93637 0.84701 1.02226 1.84369 1.59205 1.35888 1.38333 1.19528 0.93067 0.95141 0.86443 1.21428 1.05079 1.01442 0.94988 1.21263 0.95071 0.96973 0.97847 1.21464 1.01229 0.94968 0.99735 1.21362 0.96629 1.00294 0.91641 1.20733 0.99952 0.95134 1.01686 1.21365 0.94090 0.98683 0.98067 1.21004 1.03015 0.90473 0.99972 0.90933 0.90724 0.89306 0.95113 0.98182 0.92366 0.73658 0.86600 0.84770 0.86581 0.84650 0.83301 0.82161 0.83832 0.82748 0.81618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.13 10.24 127.77 1.31 3.44 16 2 N -0.62 -25.85 2.86 -869.32 -2.48 -28.33 16 3 C 0.28 14.70 5.16 85.63 0.44 15.14 16 4 C -0.54 -31.11 9.39 25.60 0.24 -30.87 16 5 H 0.05 2.97 7.81 -2.91 -0.02 2.95 16 6 C 0.01 0.49 5.46 84.65 0.46 0.95 16 7 N -0.93 -55.92 13.29 21.45 0.28 -55.64 16 8 Si 0.97 44.81 29.54 68.60 2.03 46.83 16 9 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 10 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 11 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 12 C 0.69 29.23 8.03 179.05 1.44 30.66 16 13 O -0.62 -32.52 13.60 -4.00 -0.05 -32.57 16 14 N -0.67 -20.24 5.23 -317.05 -1.66 -21.90 16 15 C 0.17 4.88 6.28 38.10 0.24 5.12 16 16 C -0.13 -4.18 8.65 22.38 0.19 -3.99 16 17 C -0.11 -3.10 9.98 22.35 0.22 -2.87 16 18 C 0.05 1.34 4.50 22.51 0.10 1.44 16 19 O -0.27 -6.90 9.98 -36.25 -0.36 -7.26 16 20 C 0.10 2.42 6.62 22.52 0.15 2.57 16 21 C -0.21 -5.10 8.95 22.37 0.20 -4.90 16 22 C -0.09 -1.87 10.04 22.25 0.22 -1.65 16 23 C -0.16 -2.47 10.04 22.28 0.22 -2.25 16 24 C -0.08 -1.22 10.04 22.25 0.22 -0.99 16 25 C -0.16 -2.97 9.99 22.37 0.22 -2.75 16 26 C -0.10 -2.26 8.75 22.35 0.20 -2.06 16 27 C -0.12 -2.71 9.96 22.38 0.22 -2.49 16 28 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.07 2.18 8.07 -2.38 -0.02 2.16 16 30 H 0.09 1.76 6.30 -2.39 -0.02 1.74 16 31 H 0.03 1.65 8.07 -2.39 -0.02 1.63 16 32 H 0.00 0.00 7.42 -2.39 -0.02 -0.02 16 33 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 34 H 0.42 8.95 6.52 -92.71 -0.60 8.34 16 35 H 0.12 4.57 6.41 -2.91 -0.02 4.56 16 36 H 0.13 3.68 8.06 -2.91 -0.02 3.66 16 37 H 0.12 3.10 6.23 -2.91 -0.02 3.08 16 38 H 0.14 2.30 8.06 -2.91 -0.02 2.28 16 39 H 0.15 1.54 8.06 -2.91 -0.02 1.51 16 40 H 0.16 1.31 8.06 -2.91 -0.02 1.29 16 41 H 0.14 2.23 8.06 -2.91 -0.02 2.21 16 42 H 0.15 2.64 8.06 -2.91 -0.02 2.61 16 43 H 0.17 2.44 8.06 -2.91 -0.02 2.41 16 Total: -1.00 -77.07 367.57 4.50 -72.58 By element: Atomic # 1 Polarization: 21.37 SS G_CDS: 0.43 Total: 21.80 kcal Atomic # 6 Polarization: -1.81 SS G_CDS: 6.31 Total: 4.50 kcal Atomic # 7 Polarization: -102.01 SS G_CDS: -3.86 Total: -105.87 kcal Atomic # 8 Polarization: -39.42 SS G_CDS: -0.42 Total: -39.84 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.83 kcal Total: -77.07 4.50 -72.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176539766.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.422 kcal (2) G-P(sol) polarization free energy of solvation -77.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds