Wall clock time and date at job start Tue Mar 31 2020 14:07:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.28442 * 125.19068 * 2 1 4 4 C 1.30892 * 110.94656 * 180.26669 * 3 2 1 5 5 C 1.39645 * 107.86649 * 359.74688 * 4 3 2 6 6 C 1.36603 * 125.18935 * 179.83786 * 2 1 3 7 7 C 1.47213 * 126.88990 * 0.02562 * 6 2 1 8 8 O 1.21809 * 120.00139 * 359.70149 * 7 6 2 9 9 C 1.46364 * 119.99804 * 179.70963 * 7 6 2 10 10 C 1.34987 * 119.99820 * 179.97438 * 9 7 6 11 11 C 1.47143 * 119.99911 * 179.97438 * 10 9 7 12 12 C 1.39925 * 120.14739 * 0.02562 * 11 10 9 13 13 C 1.37878 * 119.93627 * 179.72464 * 12 11 10 14 14 C 1.38353 * 120.23328 * 359.97438 * 13 12 11 15 15 C 1.38874 * 120.29923 * 359.97438 * 14 13 12 16 16 O 1.35901 * 119.96586 * 180.02562 * 15 14 13 17 17 C 1.42903 * 117.00331 * 359.97438 * 16 15 14 18 18 C 1.53006 * 109.47072 * 180.02562 * 17 16 15 19 19 C 1.50695 * 109.46698 * 180.02562 * 18 17 16 20 20 H 1.08003 * 120.00247 * 359.97438 * 19 18 17 21 21 C 1.37881 * 119.99548 * 180.02562 * 19 18 17 22 22 N 1.31518 * 119.99737 * 179.97438 * 21 19 18 23 23 Si 1.86793 * 120.00131 * 359.97438 * 21 19 18 24 24 H 1.48506 * 109.47018 * 90.00544 * 23 21 19 25 25 H 1.48504 * 109.47358 * 210.00138 * 23 21 19 26 26 H 1.48492 * 109.47380 * 330.00340 * 23 21 19 27 27 C 1.38412 * 120.06175 * 0.04089 * 15 14 13 28 28 H 1.09001 * 109.47207 * 270.15724 * 1 2 3 29 29 H 1.08991 * 109.47067 * 30.16037 * 1 2 3 30 30 H 1.09002 * 109.46795 * 150.16365 * 1 2 3 31 31 H 1.07996 * 126.06254 * 179.71635 * 4 3 2 32 32 H 1.07997 * 127.32211 * 179.97438 * 5 4 3 33 33 H 1.07998 * 119.99630 * 359.97438 * 9 7 6 34 34 H 1.07998 * 120.00547 * 0.02562 * 10 9 7 35 35 H 1.08005 * 120.02968 * 359.69888 * 12 11 10 36 36 H 1.08001 * 119.88525 * 180.02562 * 13 12 11 37 37 H 1.07998 * 119.84586 * 179.97438 * 14 13 12 38 38 H 1.08997 * 109.47031 * 299.99773 * 17 16 15 39 39 H 1.08994 * 109.46972 * 59.99775 * 17 16 15 40 40 H 1.08997 * 109.46769 * 299.99641 * 18 17 16 41 41 H 1.08995 * 109.47200 * 59.99596 * 18 17 16 42 42 H 0.97001 * 119.99883 * 180.02562 * 22 21 19 43 43 H 1.07994 * 120.11308 * 180.02562 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2052 1.0497 0.0000 4 6 3.4739 0.7276 -0.0057 5 6 3.5621 -0.6660 -0.0039 6 6 2.2522 -1.1164 0.0032 7 6 1.7992 -2.5171 0.0066 8 8 0.6081 -2.7720 0.0123 9 6 2.7801 -3.6034 0.0033 10 6 2.3648 -4.8878 0.0070 11 6 3.3509 -5.9799 0.0031 12 6 4.7199 -5.6906 -0.0038 13 6 5.6401 -6.7173 -0.0016 14 6 5.2150 -8.0339 0.0079 15 6 3.8586 -8.3321 0.0159 16 8 3.4486 -9.6277 0.0258 17 6 4.4666 -10.6305 0.0268 18 6 3.8177 -12.0161 0.0377 19 6 4.8914 -13.0735 0.0394 20 1 5.9324 -12.7861 0.0328 21 6 4.5446 -14.4080 0.0482 22 7 5.4816 -15.3309 0.0492 23 14 2.7440 -14.9050 0.0588 24 1 2.2608 -15.0446 -1.3385 25 1 2.5926 -16.2017 0.7667 26 1 1.9473 -13.8642 0.7565 27 6 2.9242 -7.3110 0.0135 28 1 -0.3634 0.0028 1.0277 29 1 -0.3633 0.8885 -0.5163 30 1 -0.3633 -0.8915 -0.5113 31 1 4.3048 1.4174 -0.0113 32 1 4.4606 -1.2652 -0.0077 33 1 3.8362 -3.3773 -0.0020 34 1 1.3087 -5.1139 0.0119 35 1 5.0553 -4.6640 -0.0112 36 1 6.6966 -6.4931 -0.0066 37 1 5.9412 -8.8332 0.0091 38 1 5.0816 -10.5248 -0.8670 39 1 5.0905 -10.5140 0.9129 40 1 3.2025 -12.1221 0.9312 41 1 3.1941 -12.1323 -0.8486 42 1 5.2376 -16.2697 0.0550 43 1 1.8693 -7.5420 0.0202 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193053220.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:30 Heat of formation + Delta-G solvation = 43.132994 kcal Electronic energy + Delta-G solvation = -24851.173521 eV Core-core repulsion = 21057.095094 eV Total energy + Delta-G solvation = -3794.078427 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.89108 -40.06760 -39.42926 -37.60759 -34.28174 -33.64193 -33.34938 -31.74346 -31.27556 -30.17818 -29.11527 -27.54938 -25.79829 -24.98808 -22.98006 -22.64705 -21.96068 -20.82124 -20.17033 -19.27739 -18.19736 -17.45411 -16.77283 -16.64992 -16.37562 -15.91161 -15.64208 -15.57101 -15.21732 -14.57447 -14.47852 -14.24409 -14.02693 -13.98080 -13.64101 -13.26305 -13.24250 -13.16802 -12.87670 -12.66186 -12.32692 -12.03383 -11.75103 -11.48178 -11.24020 -10.97832 -10.86669 -10.45283 -10.37178 -10.26145 -10.05919 -9.88194 -9.62931 -9.43747 -9.40771 -8.67770 -8.61818 -8.08135 -6.18507 -4.19953 -0.06712 0.92532 1.41842 1.89296 2.05263 2.25906 2.92150 3.24812 3.32424 3.37250 3.40544 3.65273 3.78841 4.12719 4.34518 4.42649 4.60738 4.70403 4.71404 4.77628 4.85756 4.89681 5.03387 5.06403 5.14159 5.15584 5.23355 5.33842 5.37439 5.40128 5.71778 5.82209 5.82524 5.88220 5.97275 6.07775 6.26438 6.27325 6.29788 6.43023 6.44361 6.66384 6.99861 7.03710 7.15919 7.55737 7.63010 7.76500 8.32849 8.81639 9.41545 10.93876 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.032651 B = 0.001706 C = 0.001624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.355463 B =16405.713064 C =17237.284442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.263 5.263 3 N -0.278 5.278 4 C -0.008 4.008 5 C -0.171 4.171 6 C -0.062 4.062 7 C 0.459 3.541 8 O -0.468 6.468 9 C -0.236 4.236 10 C 0.011 3.989 11 C -0.056 4.056 12 C -0.143 4.143 13 C -0.083 4.083 14 C -0.191 4.191 15 C 0.140 3.860 16 O -0.318 6.318 17 C 0.071 3.929 18 C -0.009 4.009 19 C -0.529 4.529 20 H 0.075 0.925 21 C 0.073 3.927 22 N -0.896 5.896 23 Si 0.881 3.119 24 H -0.275 1.275 25 H -0.285 1.285 26 H -0.263 1.263 27 C -0.131 4.131 28 H 0.085 0.915 29 H 0.094 0.906 30 H 0.108 0.892 31 H 0.188 0.812 32 H 0.165 0.835 33 H 0.139 0.861 34 H 0.136 0.864 35 H 0.127 0.873 36 H 0.128 0.872 37 H 0.136 0.864 38 H 0.058 0.942 39 H 0.058 0.942 40 H 0.028 0.972 41 H 0.024 0.976 42 H 0.266 0.734 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.561 30.976 -0.207 31.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.051 5.051 3 N -0.112 5.112 4 C -0.183 4.183 5 C -0.200 4.200 6 C -0.188 4.188 7 C 0.340 3.660 8 O -0.346 6.346 9 C -0.256 4.256 10 C -0.007 4.007 11 C -0.056 4.056 12 C -0.161 4.161 13 C -0.101 4.101 14 C -0.210 4.210 15 C 0.094 3.906 16 O -0.231 6.231 17 C -0.003 4.003 18 C -0.046 4.046 19 C -0.567 4.567 20 H 0.093 0.907 21 C -0.130 4.130 22 N -0.534 5.534 23 Si 0.707 3.293 24 H -0.200 1.200 25 H -0.211 1.211 26 H -0.188 1.188 27 C -0.149 4.149 28 H 0.104 0.896 29 H 0.113 0.887 30 H 0.127 0.873 31 H 0.205 0.795 32 H 0.182 0.818 33 H 0.157 0.843 34 H 0.154 0.846 35 H 0.144 0.856 36 H 0.145 0.855 37 H 0.153 0.847 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.046 0.954 41 H 0.042 0.958 42 H 0.076 0.924 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -6.239 31.454 -0.196 32.068 hybrid contribution 0.143 -1.043 0.010 1.052 sum -6.096 30.412 -0.186 31.017 Atomic orbital electron populations 1.22369 0.72598 1.05932 1.04835 1.45756 1.07932 1.02136 1.49250 1.73210 1.04541 1.14028 1.19410 1.23647 0.93433 0.95186 1.06043 1.22364 0.95818 0.95361 1.06436 1.22183 0.91878 0.90524 1.14172 1.19436 0.88530 0.86038 0.71978 1.90667 1.18851 1.86317 1.38800 1.23054 1.00350 0.92463 1.09683 1.22585 0.99508 0.91527 0.87101 1.18646 0.92971 0.91836 1.02150 1.21213 0.91886 0.99356 1.03613 1.20884 0.99673 0.91834 0.97742 1.21641 0.95186 0.98255 1.05943 1.19027 0.92287 0.85246 0.94081 1.86146 1.37995 1.11835 1.87144 1.23131 0.89562 0.86969 1.00601 1.19588 0.97682 0.89395 0.97969 1.20826 0.93617 0.89626 1.52611 0.90727 1.24932 0.97659 0.96329 0.94042 1.69891 1.32803 1.00751 1.49983 0.86758 0.85512 0.78215 0.78785 1.20040 1.21127 1.18760 1.20633 0.99587 0.89906 1.04818 0.89636 0.88721 0.87324 0.79530 0.81794 0.84322 0.84618 0.85556 0.85453 0.84662 0.92376 0.92344 0.95363 0.95790 0.92397 0.84754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.55 10.82 59.85 0.65 1.19 16 2 N -0.26 -2.47 3.75 -63.84 -0.24 -2.71 16 3 N -0.28 -2.72 11.90 30.59 0.36 -2.35 16 4 C -0.01 -0.06 12.03 -17.43 -0.21 -0.27 16 5 C -0.17 -1.26 10.48 -38.95 -0.41 -1.67 16 6 C -0.06 -0.57 6.95 -81.99 -0.57 -1.14 16 7 C 0.46 4.39 7.07 -32.67 -0.23 4.15 16 8 O -0.47 -5.35 14.59 5.09 0.07 -5.28 16 9 C -0.24 -1.94 9.07 -37.47 -0.34 -2.28 16 10 C 0.01 0.11 9.46 -37.12 -0.35 -0.24 16 11 C -0.06 -0.61 5.87 -105.07 -0.62 -1.23 16 12 C -0.14 -1.40 9.41 -39.08 -0.37 -1.77 16 13 C -0.08 -0.89 10.02 -39.67 -0.40 -1.29 16 14 C -0.19 -2.58 9.04 -39.30 -0.36 -2.93 16 15 C 0.14 2.14 6.68 -39.28 -0.26 1.88 16 16 O -0.32 -5.81 10.13 -19.43 -0.20 -6.01 16 17 C 0.07 1.39 4.68 37.16 0.17 1.56 16 18 C -0.01 -0.21 4.41 -27.88 -0.12 -0.33 16 19 C -0.53 -14.54 9.66 -34.44 -0.33 -14.88 16 20 H 0.07 2.16 7.99 -52.48 -0.42 1.74 16 21 C 0.07 2.06 5.47 -17.82 -0.10 1.97 16 22 N -0.90 -26.78 13.96 55.43 0.77 -26.00 16 23 Si 0.88 21.19 27.47 -169.99 -4.67 16.52 16 24 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 25 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 26 H -0.26 -6.14 6.54 56.52 0.37 -5.77 16 27 C -0.13 -1.70 9.73 -38.94 -0.38 -2.08 16 28 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.11 0.75 6.31 -51.93 -0.33 0.42 16 31 H 0.19 0.82 8.06 -52.49 -0.42 0.39 16 32 H 0.16 0.72 7.48 -52.49 -0.39 0.33 16 33 H 0.14 0.83 5.27 -52.49 -0.28 0.55 16 34 H 0.14 1.25 7.52 -52.49 -0.39 0.85 16 35 H 0.13 0.87 6.16 -52.48 -0.32 0.54 16 36 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 37 H 0.14 1.80 6.28 -52.49 -0.33 1.48 16 38 H 0.06 1.08 7.66 -51.93 -0.40 0.68 16 39 H 0.06 1.09 7.65 -51.93 -0.40 0.69 16 40 H 0.03 0.67 7.20 -51.93 -0.37 0.29 16 41 H 0.02 0.56 7.57 -51.93 -0.39 0.17 16 42 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 43 H 0.13 1.60 8.06 -52.49 -0.42 1.18 16 LS Contribution 369.25 15.07 5.56 5.56 Total: -1.00 -32.90 369.25 -7.86 -40.75 By element: Atomic # 1 Polarization: 4.18 SS G_CDS: -5.31 Total: -1.13 kcal Atomic # 6 Polarization: -15.14 SS G_CDS: -4.22 Total: -19.36 kcal Atomic # 7 Polarization: -31.96 SS G_CDS: 0.90 Total: -31.06 kcal Atomic # 8 Polarization: -11.16 SS G_CDS: -0.12 Total: -11.28 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.67 Total: 16.52 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.90 -7.86 -40.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193053220.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.883 kcal (2) G-P(sol) polarization free energy of solvation -32.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds