Wall clock time and date at job start Tue Mar 31 2020 14:07:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.28442 * 125.19068 * 2 1 4 4 C 1.30892 * 110.94656 * 180.26669 * 3 2 1 5 5 C 1.39645 * 107.86649 * 359.74688 * 4 3 2 6 6 C 1.36603 * 125.18935 * 179.83786 * 2 1 3 7 7 C 1.47213 * 126.88990 * 0.02562 * 6 2 1 8 8 O 1.21809 * 120.00139 * 359.70149 * 7 6 2 9 9 C 1.46364 * 119.99804 * 179.70963 * 7 6 2 10 10 C 1.34987 * 119.99820 * 179.97438 * 9 7 6 11 11 C 1.47143 * 119.99911 * 179.97438 * 10 9 7 12 12 C 1.39925 * 120.14739 * 0.02562 * 11 10 9 13 13 C 1.37878 * 119.93627 * 179.72464 * 12 11 10 14 14 C 1.38353 * 120.23328 * 359.97438 * 13 12 11 15 15 C 1.38874 * 120.29923 * 359.97438 * 14 13 12 16 16 O 1.35901 * 119.96586 * 180.02562 * 15 14 13 17 17 C 1.42903 * 117.00331 * 359.97438 * 16 15 14 18 18 C 1.53006 * 109.47072 * 180.02562 * 17 16 15 19 19 C 1.50695 * 109.46698 * 180.02562 * 18 17 16 20 20 H 1.08003 * 120.00247 * 359.97438 * 19 18 17 21 21 C 1.37881 * 119.99548 * 180.02562 * 19 18 17 22 22 N 1.31518 * 119.99737 * 179.97438 * 21 19 18 23 23 Si 1.86793 * 120.00131 * 359.97438 * 21 19 18 24 24 H 1.48506 * 109.47018 * 90.00544 * 23 21 19 25 25 H 1.48504 * 109.47358 * 210.00138 * 23 21 19 26 26 H 1.48492 * 109.47380 * 330.00340 * 23 21 19 27 27 C 1.38412 * 120.06175 * 0.04089 * 15 14 13 28 28 H 1.09001 * 109.47207 * 270.15724 * 1 2 3 29 29 H 1.08991 * 109.47067 * 30.16037 * 1 2 3 30 30 H 1.09002 * 109.46795 * 150.16365 * 1 2 3 31 31 H 1.07996 * 126.06254 * 179.71635 * 4 3 2 32 32 H 1.07997 * 127.32211 * 179.97438 * 5 4 3 33 33 H 1.07998 * 119.99630 * 359.97438 * 9 7 6 34 34 H 1.07998 * 120.00547 * 0.02562 * 10 9 7 35 35 H 1.08005 * 120.02968 * 359.69888 * 12 11 10 36 36 H 1.08001 * 119.88525 * 180.02562 * 13 12 11 37 37 H 1.07998 * 119.84586 * 179.97438 * 14 13 12 38 38 H 1.08997 * 109.47031 * 299.99773 * 17 16 15 39 39 H 1.08994 * 109.46972 * 59.99775 * 17 16 15 40 40 H 1.08997 * 109.46769 * 299.99641 * 18 17 16 41 41 H 1.08995 * 109.47200 * 59.99596 * 18 17 16 42 42 H 0.97001 * 119.99883 * 180.02562 * 22 21 19 43 43 H 1.07994 * 120.11308 * 180.02562 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2052 1.0497 0.0000 4 6 3.4739 0.7276 -0.0057 5 6 3.5621 -0.6660 -0.0039 6 6 2.2522 -1.1164 0.0032 7 6 1.7992 -2.5171 0.0066 8 8 0.6081 -2.7720 0.0123 9 6 2.7801 -3.6034 0.0033 10 6 2.3648 -4.8878 0.0070 11 6 3.3509 -5.9799 0.0031 12 6 4.7199 -5.6906 -0.0038 13 6 5.6401 -6.7173 -0.0016 14 6 5.2150 -8.0339 0.0079 15 6 3.8586 -8.3321 0.0159 16 8 3.4486 -9.6277 0.0258 17 6 4.4666 -10.6305 0.0268 18 6 3.8177 -12.0161 0.0377 19 6 4.8914 -13.0735 0.0394 20 1 5.9324 -12.7861 0.0328 21 6 4.5446 -14.4080 0.0482 22 7 5.4816 -15.3309 0.0492 23 14 2.7440 -14.9050 0.0588 24 1 2.2608 -15.0446 -1.3385 25 1 2.5926 -16.2017 0.7667 26 1 1.9473 -13.8642 0.7565 27 6 2.9242 -7.3110 0.0135 28 1 -0.3634 0.0028 1.0277 29 1 -0.3633 0.8885 -0.5163 30 1 -0.3633 -0.8915 -0.5113 31 1 4.3048 1.4174 -0.0113 32 1 4.4606 -1.2652 -0.0077 33 1 3.8362 -3.3773 -0.0020 34 1 1.3087 -5.1139 0.0119 35 1 5.0553 -4.6640 -0.0112 36 1 6.6966 -6.4931 -0.0066 37 1 5.9412 -8.8332 0.0091 38 1 5.0816 -10.5248 -0.8670 39 1 5.0905 -10.5140 0.9129 40 1 3.2025 -12.1221 0.9312 41 1 3.1941 -12.1323 -0.8486 42 1 5.2376 -16.2697 0.0550 43 1 1.8693 -7.5420 0.0202 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193053220.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:29 Heat of formation + Delta-G solvation = 24.372379 kcal Electronic energy + Delta-G solvation = -24851.987043 eV Core-core repulsion = 21057.095094 eV Total energy + Delta-G solvation = -3794.891949 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.47735 -41.11072 -40.23335 -38.70950 -35.50333 -34.93929 -34.20863 -32.94997 -32.41064 -31.30692 -30.05388 -28.07894 -27.24942 -26.07069 -23.87664 -23.58861 -22.87552 -22.13879 -21.06347 -20.10589 -19.23145 -18.74044 -18.07378 -17.25329 -17.22336 -17.00517 -16.99991 -16.46654 -16.27866 -15.96756 -15.32817 -15.16072 -14.99745 -14.63521 -14.54983 -14.50318 -14.40554 -14.23811 -13.75635 -13.50712 -13.40320 -13.28203 -13.05040 -12.67741 -12.45550 -12.22962 -11.98158 -11.84400 -11.77341 -11.68712 -11.43231 -11.17558 -11.08802 -10.82320 -10.27000 -9.99290 -9.51223 -9.08540 -8.35766 -6.42388 -0.81864 0.19441 0.48983 1.12574 1.35225 1.36943 1.49158 1.51743 1.69711 2.23480 2.27629 2.32205 2.84255 2.88651 2.99422 3.62437 3.68316 3.84636 3.97592 4.07346 4.16400 4.22110 4.22238 4.23686 4.26130 4.32962 4.38467 4.48758 4.52118 4.58965 4.66243 4.67849 4.89854 4.95209 5.04437 5.12218 5.23401 5.29369 5.37179 5.46396 5.52020 5.57930 5.60531 5.71158 5.81914 6.15142 6.34368 6.48735 6.63452 7.04663 7.22964 8.79748 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.032651 B = 0.001706 C = 0.001624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.355463 B =16405.713064 C =17237.284442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.276 5.276 3 N -0.305 5.305 4 C -0.013 4.013 5 C -0.159 4.159 6 C -0.087 4.087 7 C 0.458 3.542 8 O -0.494 6.494 9 C -0.213 4.213 10 C -0.003 4.003 11 C -0.049 4.049 12 C -0.130 4.130 13 C -0.079 4.079 14 C -0.207 4.207 15 C 0.104 3.896 16 O -0.337 6.337 17 C 0.087 3.913 18 C -0.008 4.008 19 C -0.537 4.537 20 H 0.044 0.956 21 C 0.015 3.985 22 N -0.941 5.941 23 Si 0.947 3.053 24 H -0.265 1.265 25 H -0.279 1.279 26 H -0.251 1.251 27 C -0.144 4.144 28 H 0.091 0.909 29 H 0.108 0.892 30 H 0.101 0.899 31 H 0.217 0.783 32 H 0.198 0.802 33 H 0.171 0.829 34 H 0.130 0.870 35 H 0.168 0.832 36 H 0.159 0.841 37 H 0.128 0.872 38 H 0.060 0.940 39 H 0.060 0.940 40 H 0.027 0.973 41 H 0.026 0.974 42 H 0.270 0.730 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.294 33.792 -0.231 34.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.065 5.065 3 N -0.139 5.139 4 C -0.188 4.188 5 C -0.187 4.187 6 C -0.212 4.212 7 C 0.341 3.659 8 O -0.374 6.374 9 C -0.232 4.232 10 C -0.021 4.021 11 C -0.049 4.049 12 C -0.148 4.148 13 C -0.097 4.097 14 C -0.226 4.226 15 C 0.059 3.941 16 O -0.251 6.251 17 C 0.012 3.988 18 C -0.045 4.045 19 C -0.575 4.575 20 H 0.062 0.938 21 C -0.184 4.184 22 N -0.581 5.581 23 Si 0.770 3.230 24 H -0.190 1.190 25 H -0.205 1.205 26 H -0.175 1.175 27 C -0.163 4.163 28 H 0.109 0.891 29 H 0.126 0.874 30 H 0.120 0.880 31 H 0.233 0.767 32 H 0.215 0.785 33 H 0.188 0.812 34 H 0.148 0.852 35 H 0.185 0.815 36 H 0.176 0.824 37 H 0.146 0.854 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.045 0.955 41 H 0.044 0.956 42 H 0.079 0.921 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -5.973 34.301 -0.221 34.817 hybrid contribution 0.140 -1.658 0.015 1.664 sum -5.833 32.642 -0.206 33.160 Atomic orbital electron populations 1.22460 0.71984 1.06257 1.05353 1.45986 1.08605 1.02196 1.49700 1.73193 1.05710 1.14668 1.20305 1.24265 0.93457 0.96149 1.04893 1.22840 0.96053 0.95486 1.04366 1.22363 0.92911 0.90306 1.15642 1.19708 0.88354 0.86700 0.71148 1.90667 1.20047 1.86696 1.39994 1.23244 1.01470 0.91285 1.07180 1.22462 0.99093 0.91669 0.88902 1.18788 0.94047 0.91075 1.01032 1.21690 0.90929 1.01135 1.01017 1.21252 1.01563 0.90611 0.96292 1.21741 0.94261 0.99716 1.06895 1.19313 0.93740 0.84064 0.97009 1.86043 1.37513 1.13157 1.88431 1.22684 0.89347 0.85910 1.00853 1.19450 0.96538 0.90736 0.97776 1.21119 0.93421 0.91033 1.51934 0.93785 1.25856 1.02456 0.96363 0.93685 1.70023 1.35236 1.01291 1.51521 0.85705 0.79766 0.78159 0.79365 1.19022 1.20486 1.17493 1.20776 0.99455 0.90594 1.05464 0.89051 0.87355 0.88021 0.76692 0.78458 0.81220 0.85214 0.81471 0.82367 0.85433 0.92180 0.92194 0.95500 0.95582 0.92110 0.84766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.01 10.82 127.77 1.38 2.40 16 2 N -0.28 -4.83 3.75 -355.88 -1.33 -6.16 16 3 N -0.30 -5.42 11.90 -57.15 -0.68 -6.10 16 4 C -0.01 -0.16 12.03 85.17 1.02 0.86 16 5 C -0.16 -1.73 10.48 22.68 0.24 -1.49 16 6 C -0.09 -1.41 6.95 40.83 0.28 -1.12 16 7 C 0.46 7.83 7.07 26.75 0.19 8.02 16 8 O -0.49 -10.97 14.59 -4.70 -0.07 -11.03 16 9 C -0.21 -2.76 9.07 23.64 0.21 -2.54 16 10 C 0.00 -0.04 9.46 23.86 0.23 0.18 16 11 C -0.05 -0.96 5.87 -20.16 -0.12 -1.08 16 12 C -0.13 -2.02 9.41 22.59 0.21 -1.81 16 13 C -0.08 -1.46 10.02 22.21 0.22 -1.24 16 14 C -0.21 -5.43 9.04 22.45 0.20 -5.23 16 15 C 0.10 3.18 6.68 22.46 0.15 3.33 16 16 O -0.34 -12.57 10.13 -92.43 -0.94 -13.50 16 17 C 0.09 3.45 4.68 71.98 0.34 3.78 16 18 C -0.01 -0.36 4.41 29.85 0.13 -0.22 16 19 C -0.54 -30.35 9.66 25.60 0.25 -30.10 16 20 H 0.04 2.67 7.99 -2.91 -0.02 2.65 16 21 C 0.01 0.85 5.47 84.65 0.46 1.31 16 22 N -0.94 -57.55 13.96 21.45 0.30 -57.25 16 23 Si 0.95 43.80 27.47 68.60 1.88 45.68 16 24 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 25 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 26 H -0.25 -11.04 6.54 99.48 0.65 -10.39 16 27 C -0.14 -3.70 9.73 22.69 0.22 -3.48 16 28 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.10 1.42 6.31 -2.39 -0.02 1.41 16 31 H 0.22 1.08 8.06 -2.91 -0.02 1.06 16 32 H 0.20 0.59 7.48 -2.91 -0.02 0.57 16 33 H 0.17 1.03 5.27 -2.91 -0.02 1.01 16 34 H 0.13 2.29 7.52 -2.91 -0.02 2.27 16 35 H 0.17 1.19 6.16 -2.91 -0.02 1.18 16 36 H 0.16 1.91 8.06 -2.91 -0.02 1.88 16 37 H 0.13 3.44 6.28 -2.91 -0.02 3.42 16 38 H 0.06 2.31 7.66 -2.39 -0.02 2.29 16 39 H 0.06 2.31 7.65 -2.39 -0.02 2.29 16 40 H 0.03 1.27 7.20 -2.39 -0.02 1.25 16 41 H 0.03 1.21 7.57 -2.39 -0.02 1.19 16 42 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 43 H 0.13 3.27 8.06 -2.91 -0.02 3.25 16 Total: -1.00 -73.64 369.25 5.77 -67.87 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: 0.98 Total: 8.92 kcal Atomic # 6 Polarization: -34.05 SS G_CDS: 5.63 Total: -28.42 kcal Atomic # 7 Polarization: -67.80 SS G_CDS: -1.71 Total: -69.52 kcal Atomic # 8 Polarization: -23.53 SS G_CDS: -1.01 Total: -24.54 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 1.88 Total: 45.68 kcal Total: -73.64 5.77 -67.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193053220.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.240 kcal (2) G-P(sol) polarization free energy of solvation -73.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds