Wall clock time and date at job start Tue Mar 31 2020 14:44:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42906 * 114.00286 * 2 1 4 4 C 1.50693 * 109.47035 * 180.02562 * 3 2 1 5 5 C 1.38279 * 119.93180 * 90.00553 * 4 3 2 6 6 C 1.38114 * 120.07601 * 179.97438 * 5 4 3 7 7 C 1.38868 * 119.92527 * 0.02562 * 6 5 4 8 8 N 1.39931 * 120.07084 * 179.97438 * 7 6 5 9 9 C 1.34781 * 120.00086 * 144.52265 * 8 7 6 10 10 O 1.21578 * 120.00042 * 3.59567 * 9 8 7 11 11 N 1.34773 * 119.99978 * 183.59585 * 9 8 7 12 12 C 1.39230 * 119.99972 * 184.12116 * 11 9 8 13 13 C 1.39484 * 119.83098 * 143.12894 * 12 11 9 14 14 C 1.36374 * 120.16572 * 179.76274 * 13 12 11 15 15 C 1.40867 * 119.82813 * 0.50874 * 14 13 12 16 16 C 1.41150 * 120.16329 * 179.71780 * 15 14 13 17 17 H 1.08004 * 119.99861 * 159.47189 * 16 15 14 18 18 C 1.39891 * 120.00309 * 339.46982 * 16 15 14 19 19 N 1.30885 * 119.99935 * 327.27453 * 18 16 15 20 20 Si 1.86798 * 120.00178 * 147.26758 * 18 16 15 21 21 H 1.48508 * 109.46987 * 94.99358 * 20 18 16 22 22 H 1.48494 * 109.47490 * 214.99068 * 20 18 16 23 23 H 1.48495 * 109.47436 * 334.99560 * 20 18 16 24 24 C 1.40870 * 119.67378 * 359.74481 * 15 14 13 25 25 C 1.36373 * 119.83007 * 359.97438 * 24 15 14 26 26 C 1.38877 * 119.85922 * 0.24605 * 7 6 5 27 27 C 1.38102 * 119.92749 * 359.49870 * 26 7 6 28 28 H 1.09002 * 109.47099 * 300.00036 * 1 2 3 29 29 H 1.09003 * 109.47160 * 59.99701 * 1 2 3 30 30 H 1.09002 * 109.46975 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46852 * 60.00051 * 3 2 1 32 32 H 1.08999 * 109.47143 * 300.00374 * 3 2 1 33 33 H 1.08008 * 119.96106 * 359.97438 * 5 4 3 34 34 H 1.08002 * 120.03618 * 179.97438 * 6 5 4 35 35 H 0.97003 * 119.99679 * 324.25548 * 8 7 6 36 36 H 0.97006 * 120.00163 * 4.12422 * 11 9 8 37 37 H 1.08002 * 119.91729 * 359.97438 * 13 12 11 38 38 H 1.08004 * 120.08437 * 180.23091 * 14 13 12 39 39 H 0.96996 * 119.99828 * 179.97438 * 19 18 16 40 40 H 1.07997 * 120.08740 * 179.97438 * 24 15 14 41 41 H 1.07998 * 119.92012 * 179.97438 * 25 24 15 42 42 H 1.07998 * 120.03221 * 179.72886 * 26 7 6 43 43 H 1.08007 * 119.96437 * 180.23123 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5124 1.1864 -0.0006 5 6 4.1998 1.1322 -1.1993 6 6 5.5766 1.0236 -1.2033 7 6 6.2707 0.9683 -0.0018 8 7 7.6657 0.8577 -0.0024 9 6 8.3914 1.4795 0.9480 10 8 7.8315 2.0821 1.8433 11 7 9.7377 1.4332 0.9059 12 6 10.4862 2.0017 1.9331 13 6 11.6648 1.3865 2.3552 14 6 12.4058 1.9400 3.3574 15 6 11.9725 3.1302 3.9739 16 6 12.7309 3.7059 5.0159 17 1 12.6048 4.7498 5.2623 18 6 13.6458 2.9243 5.7294 19 7 13.4032 1.6543 5.9324 20 14 15.2137 3.6932 6.3925 21 1 15.0046 4.1051 7.8039 22 1 16.3180 2.7028 6.3244 23 1 15.5650 4.8831 5.5765 24 6 10.7784 3.7427 3.5457 25 6 10.0510 3.1806 2.5384 26 6 5.5771 1.0172 1.2003 27 6 4.2008 1.1312 1.1974 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6886 1.8464 0.8900 32 1 1.6886 1.8464 -0.8899 33 1 3.6593 1.1749 -2.1334 34 1 6.1128 0.9809 -2.1399 35 1 8.1101 0.3303 -0.6846 36 1 10.1852 1.0039 0.1600 37 1 11.9931 0.4714 1.8848 38 1 13.3201 1.4645 3.6806 39 1 14.0377 1.1123 6.4268 40 1 10.4398 4.6550 4.0140 41 1 9.1351 3.6487 2.2093 42 1 6.1137 0.9700 2.1363 43 1 3.6610 1.1731 2.1320 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193364469.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:34 Heat of formation + Delta-G solvation = -19.302273 kcal Electronic energy + Delta-G solvation = -25595.035415 eV Core-core repulsion = 21798.249591 eV Total energy + Delta-G solvation = -3796.785824 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.57013 -39.18275 -37.91813 -37.21945 -34.85075 -34.37377 -33.07646 -30.98536 -30.86400 -29.55035 -28.90347 -27.16703 -25.55032 -24.61549 -22.99016 -22.14637 -21.31929 -20.66633 -20.11806 -18.19218 -17.65840 -17.31667 -16.64934 -16.38477 -16.14620 -15.83219 -15.21142 -15.19035 -14.60692 -14.39435 -14.11385 -13.97477 -13.52773 -13.39174 -13.18610 -12.75298 -12.67958 -12.48555 -12.09921 -12.03272 -11.84603 -11.46353 -11.28490 -11.23714 -11.14829 -11.05338 -10.71954 -10.19744 -10.13621 -9.96984 -9.67715 -9.51589 -9.08207 -8.91626 -8.84964 -8.06211 -7.54302 -7.15385 -6.86623 -4.27375 1.19567 1.43220 2.62867 2.88996 3.02921 3.04919 3.11180 3.16473 3.39160 3.66307 3.88378 4.04429 4.50081 4.51907 4.69755 4.74182 4.97064 4.99231 5.05420 5.11473 5.16429 5.35563 5.39204 5.58118 5.67028 5.70490 5.99710 6.17639 6.23514 6.32979 6.44265 6.55071 6.61217 6.75577 6.83629 6.86294 6.99764 7.07825 7.09478 7.25189 7.30050 7.58721 7.83225 7.93442 8.02571 8.26243 8.39376 8.55438 8.84027 8.86480 9.04008 10.01302 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.031078 B = 0.001977 C = 0.001919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.755949 B =14158.899422 C =14588.796665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.386 6.386 3 C 0.107 3.893 4 C -0.120 4.120 5 C -0.080 4.080 6 C -0.156 4.156 7 C 0.183 3.817 8 N -0.693 5.693 9 C 0.691 3.309 10 O -0.561 6.561 11 N -0.657 5.657 12 C -0.010 4.010 13 C -0.102 4.102 14 C -0.172 4.172 15 C 0.111 3.889 16 C -0.464 4.464 17 H 0.082 0.918 18 C 0.087 3.913 19 N -0.767 5.767 20 Si 0.897 3.103 21 H -0.269 1.269 22 H -0.274 1.274 23 H -0.257 1.257 24 C -0.224 4.224 25 C -0.065 4.065 26 C -0.121 4.121 27 C -0.078 4.078 28 H 0.041 0.959 29 H 0.040 0.960 30 H 0.085 0.915 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.123 0.877 34 H 0.125 0.875 35 H 0.403 0.597 36 H 0.392 0.608 37 H 0.089 0.911 38 H 0.109 0.891 39 H 0.283 0.717 40 H 0.094 0.906 41 H 0.106 0.894 42 H 0.145 0.855 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.747 -4.156 -13.398 21.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.305 6.305 3 C 0.031 3.969 4 C -0.121 4.121 5 C -0.099 4.099 6 C -0.177 4.177 7 C 0.087 3.913 8 N -0.341 5.341 9 C 0.392 3.608 10 O -0.436 6.436 11 N -0.302 5.302 12 C -0.102 4.102 13 C -0.122 4.122 14 C -0.192 4.192 15 C 0.108 3.892 16 C -0.491 4.491 17 H 0.100 0.900 18 C -0.135 4.135 19 N -0.389 5.389 20 Si 0.720 3.280 21 H -0.195 1.195 22 H -0.199 1.199 23 H -0.181 1.181 24 C -0.244 4.244 25 C -0.085 4.085 26 C -0.142 4.142 27 C -0.097 4.097 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.104 0.896 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.141 0.859 34 H 0.143 0.857 35 H 0.238 0.762 36 H 0.225 0.775 37 H 0.107 0.893 38 H 0.127 0.873 39 H 0.094 0.906 40 H 0.112 0.888 41 H 0.123 0.877 42 H 0.162 0.838 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -15.984 -3.981 -12.424 20.632 hybrid contribution 0.987 -0.114 -0.344 1.052 sum -14.997 -4.095 -12.768 20.117 Atomic orbital electron populations 1.22748 0.81238 1.02750 0.99922 1.87991 1.19381 1.27781 1.95380 1.21304 0.90100 0.84819 1.00703 1.19464 0.93707 1.05233 0.93653 1.20707 0.93283 0.98610 0.97315 1.20827 0.94489 1.05901 0.96468 1.17569 0.81738 0.98088 0.93893 1.42727 1.04669 1.53886 1.32851 1.16039 0.82196 0.80457 0.82084 1.90916 1.70034 1.46977 1.35702 1.42030 1.03202 1.60186 1.24807 1.16852 0.96898 0.97643 0.98856 1.20138 0.95695 0.97894 0.98479 1.20611 1.01030 0.99558 0.98002 1.17602 0.89636 0.90901 0.91080 1.19516 1.18045 0.97573 1.14002 0.89997 1.25960 0.99063 0.94339 0.94119 1.69969 1.33554 1.07932 1.27489 0.86499 0.81242 0.80657 0.79619 1.19458 1.19894 1.18085 1.20569 0.97420 1.03325 1.03094 1.20356 0.98292 0.93321 0.96560 1.21398 0.93704 1.00527 0.98521 1.20935 0.93683 0.97650 0.97411 0.94045 0.94154 0.89649 0.92484 0.92633 0.85919 0.85742 0.76165 0.77504 0.89311 0.87339 0.90575 0.88765 0.87654 0.83778 0.85806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.32 16 2 O -0.39 -4.09 10.69 -35.23 -0.38 -4.47 16 3 C 0.11 1.01 6.06 36.00 0.22 1.23 16 4 C -0.12 -1.38 5.51 -104.59 -0.58 -1.96 16 5 C -0.08 -0.86 9.69 -39.61 -0.38 -1.25 16 6 C -0.16 -1.75 9.97 -39.39 -0.39 -2.14 16 7 C 0.18 2.52 6.28 -83.69 -0.53 2.00 16 8 N -0.69 -9.28 5.34 -14.23 -0.08 -9.36 16 9 C 0.69 12.35 8.22 -86.92 -0.71 11.64 16 10 O -0.56 -12.26 11.36 5.30 0.06 -12.20 16 11 N -0.66 -11.52 5.30 -14.10 -0.07 -11.59 16 12 C -0.01 -0.23 6.28 -83.57 -0.52 -0.75 16 13 C -0.10 -2.31 9.90 -39.79 -0.39 -2.70 16 14 C -0.17 -4.38 8.75 -39.26 -0.34 -4.72 16 15 C 0.11 2.96 5.59 -106.80 -0.60 2.36 16 16 C -0.46 -12.23 8.94 -37.86 -0.34 -12.57 16 17 H 0.08 2.09 8.02 -52.48 -0.42 1.67 16 18 C 0.09 2.15 4.78 -17.34 -0.08 2.07 16 19 N -0.77 -19.47 11.70 55.54 0.65 -18.82 16 20 Si 0.90 18.09 29.66 -169.99 -5.04 13.05 16 21 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 22 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 23 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 24 C -0.22 -5.73 9.74 -39.26 -0.38 -6.11 16 25 C -0.07 -1.58 8.60 -39.79 -0.34 -1.92 16 26 C -0.12 -1.83 8.68 -39.40 -0.34 -2.17 16 27 C -0.08 -1.01 9.69 -39.61 -0.38 -1.40 16 28 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.48 8.09 -51.93 -0.42 0.06 16 32 H 0.06 0.43 8.08 -51.93 -0.42 0.01 16 33 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 34 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 35 H 0.40 3.85 8.84 -40.82 -0.36 3.49 16 36 H 0.39 5.25 8.84 -40.82 -0.36 4.89 16 37 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 38 H 0.11 2.80 6.43 -52.48 -0.34 2.46 16 39 H 0.28 6.46 8.30 -40.82 -0.34 6.12 16 40 H 0.09 2.30 8.06 -52.49 -0.42 1.88 16 41 H 0.11 2.55 6.33 -52.49 -0.33 2.22 16 42 H 0.14 2.52 6.31 -52.49 -0.33 2.19 16 43 H 0.12 1.42 8.06 -52.48 -0.42 1.00 16 LS Contribution 367.02 15.07 5.53 5.53 Total: -1.00 -31.62 367.02 -9.82 -41.44 By element: Atomic # 1 Polarization: 19.01 SS G_CDS: -5.50 Total: 13.51 kcal Atomic # 6 Polarization: -12.10 SS G_CDS: -4.99 Total: -17.09 kcal Atomic # 7 Polarization: -40.28 SS G_CDS: 0.50 Total: -39.78 kcal Atomic # 8 Polarization: -16.35 SS G_CDS: -0.32 Total: -16.67 kcal Atomic # 14 Polarization: 18.09 SS G_CDS: -5.04 Total: 13.05 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.62 -9.82 -41.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193364469.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.142 kcal (2) G-P(sol) polarization free energy of solvation -31.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds