Wall clock time and date at job start Tue Mar 31 2020 14:44:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42906 * 114.00286 * 2 1 4 4 C 1.50693 * 109.47035 * 180.02562 * 3 2 1 5 5 C 1.38279 * 119.93180 * 90.00553 * 4 3 2 6 6 C 1.38114 * 120.07601 * 179.97438 * 5 4 3 7 7 C 1.38868 * 119.92527 * 0.02562 * 6 5 4 8 8 N 1.39931 * 120.07084 * 179.97438 * 7 6 5 9 9 C 1.34781 * 120.00086 * 144.52265 * 8 7 6 10 10 O 1.21578 * 120.00042 * 3.59567 * 9 8 7 11 11 N 1.34773 * 119.99978 * 183.59585 * 9 8 7 12 12 C 1.39230 * 119.99972 * 184.12116 * 11 9 8 13 13 C 1.39484 * 119.83098 * 143.12894 * 12 11 9 14 14 C 1.36374 * 120.16572 * 179.76274 * 13 12 11 15 15 C 1.40867 * 119.82813 * 0.50874 * 14 13 12 16 16 C 1.41150 * 120.16329 * 179.71780 * 15 14 13 17 17 H 1.08004 * 119.99861 * 159.47189 * 16 15 14 18 18 C 1.39891 * 120.00309 * 339.46982 * 16 15 14 19 19 N 1.30885 * 119.99935 * 327.27453 * 18 16 15 20 20 Si 1.86798 * 120.00178 * 147.26758 * 18 16 15 21 21 H 1.48508 * 109.46987 * 94.99358 * 20 18 16 22 22 H 1.48494 * 109.47490 * 214.99068 * 20 18 16 23 23 H 1.48495 * 109.47436 * 334.99560 * 20 18 16 24 24 C 1.40870 * 119.67378 * 359.74481 * 15 14 13 25 25 C 1.36373 * 119.83007 * 359.97438 * 24 15 14 26 26 C 1.38877 * 119.85922 * 0.24605 * 7 6 5 27 27 C 1.38102 * 119.92749 * 359.49870 * 26 7 6 28 28 H 1.09002 * 109.47099 * 300.00036 * 1 2 3 29 29 H 1.09003 * 109.47160 * 59.99701 * 1 2 3 30 30 H 1.09002 * 109.46975 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46852 * 60.00051 * 3 2 1 32 32 H 1.08999 * 109.47143 * 300.00374 * 3 2 1 33 33 H 1.08008 * 119.96106 * 359.97438 * 5 4 3 34 34 H 1.08002 * 120.03618 * 179.97438 * 6 5 4 35 35 H 0.97003 * 119.99679 * 324.25548 * 8 7 6 36 36 H 0.97006 * 120.00163 * 4.12422 * 11 9 8 37 37 H 1.08002 * 119.91729 * 359.97438 * 13 12 11 38 38 H 1.08004 * 120.08437 * 180.23091 * 14 13 12 39 39 H 0.96996 * 119.99828 * 179.97438 * 19 18 16 40 40 H 1.07997 * 120.08740 * 179.97438 * 24 15 14 41 41 H 1.07998 * 119.92012 * 179.97438 * 25 24 15 42 42 H 1.07998 * 120.03221 * 179.72886 * 26 7 6 43 43 H 1.08007 * 119.96437 * 180.23123 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5124 1.1864 -0.0006 5 6 4.1998 1.1322 -1.1993 6 6 5.5766 1.0236 -1.2033 7 6 6.2707 0.9683 -0.0018 8 7 7.6657 0.8577 -0.0024 9 6 8.3914 1.4795 0.9480 10 8 7.8315 2.0821 1.8433 11 7 9.7377 1.4332 0.9059 12 6 10.4862 2.0017 1.9331 13 6 11.6648 1.3865 2.3552 14 6 12.4058 1.9400 3.3574 15 6 11.9725 3.1302 3.9739 16 6 12.7309 3.7059 5.0159 17 1 12.6048 4.7498 5.2623 18 6 13.6458 2.9243 5.7294 19 7 13.4032 1.6543 5.9324 20 14 15.2137 3.6932 6.3925 21 1 15.0046 4.1051 7.8039 22 1 16.3180 2.7028 6.3244 23 1 15.5650 4.8831 5.5765 24 6 10.7784 3.7427 3.5457 25 6 10.0510 3.1806 2.5384 26 6 5.5771 1.0172 1.2003 27 6 4.2008 1.1312 1.1974 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6886 1.8464 0.8900 32 1 1.6886 1.8464 -0.8899 33 1 3.6593 1.1749 -2.1334 34 1 6.1128 0.9809 -2.1399 35 1 8.1101 0.3303 -0.6846 36 1 10.1852 1.0039 0.1600 37 1 11.9931 0.4714 1.8848 38 1 13.3201 1.4645 3.6806 39 1 14.0377 1.1123 6.4268 40 1 10.4398 4.6550 4.0140 41 1 9.1351 3.6487 2.2093 42 1 6.1137 0.9700 2.1363 43 1 3.6610 1.1731 2.1320 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193364469.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:33 Heat of formation + Delta-G solvation = -38.581602 kcal Electronic energy + Delta-G solvation = -25595.871429 eV Core-core repulsion = 21798.249591 eV Total energy + Delta-G solvation = -3797.621838 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.88244 -40.32508 -39.24283 -38.40080 -36.33996 -35.82045 -34.81569 -31.99916 -31.89299 -31.42143 -30.64328 -27.94613 -26.86102 -25.85617 -24.02831 -23.64529 -22.87140 -22.15686 -21.58143 -19.61993 -19.16851 -18.91893 -17.64174 -17.28442 -17.11646 -16.99436 -16.86227 -16.42506 -15.89683 -15.72788 -15.35506 -15.26826 -14.94860 -14.53003 -14.37026 -14.29141 -13.98755 -13.86646 -13.71906 -13.19331 -13.12064 -12.95880 -12.74302 -12.57266 -12.40624 -12.20689 -12.14596 -11.83937 -11.50364 -11.34966 -11.13933 -10.87776 -10.65047 -10.61019 -9.86452 -9.47220 -9.18031 -8.95937 -8.68917 -6.23214 0.21403 0.47353 0.85552 1.14496 1.37910 1.44406 1.56154 1.65241 2.06828 2.20313 2.61802 2.69500 3.24161 3.26683 3.70911 3.88779 3.96311 4.10074 4.26708 4.38603 4.40301 4.48558 4.50695 4.57925 4.59708 4.65690 4.75948 4.89266 4.89747 5.06540 5.10645 5.15255 5.24011 5.28007 5.36696 5.43768 5.54568 5.63288 5.64743 5.77938 6.01969 6.06477 6.10352 6.18604 6.24674 6.36406 6.62397 6.89369 6.99539 7.05509 7.55883 8.20101 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.031078 B = 0.001977 C = 0.001919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.755949 B =14158.899422 C =14588.796665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.413 6.413 3 C 0.106 3.894 4 C -0.120 4.120 5 C -0.078 4.078 6 C -0.143 4.143 7 C 0.159 3.841 8 N -0.671 5.671 9 C 0.690 3.310 10 O -0.604 6.604 11 N -0.648 5.648 12 C 0.007 3.993 13 C -0.099 4.099 14 C -0.189 4.189 15 C 0.081 3.919 16 C -0.503 4.503 17 H 0.076 0.924 18 C 0.050 3.950 19 N -0.799 5.799 20 Si 0.975 3.025 21 H -0.262 1.262 22 H -0.260 1.260 23 H -0.259 1.259 24 C -0.245 4.245 25 C -0.076 4.076 26 C -0.148 4.148 27 C -0.090 4.090 28 H 0.048 0.952 29 H 0.056 0.944 30 H 0.093 0.907 31 H 0.062 0.938 32 H 0.079 0.921 33 H 0.156 0.844 34 H 0.158 0.842 35 H 0.425 0.575 36 H 0.416 0.584 37 H 0.125 0.875 38 H 0.101 0.899 39 H 0.294 0.706 40 H 0.090 0.910 41 H 0.102 0.898 42 H 0.109 0.891 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.366 -5.043 -15.972 23.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.333 6.333 3 C 0.030 3.970 4 C -0.121 4.121 5 C -0.096 4.096 6 C -0.163 4.163 7 C 0.064 3.936 8 N -0.320 5.320 9 C 0.392 3.608 10 O -0.483 6.483 11 N -0.296 5.296 12 C -0.087 4.087 13 C -0.119 4.119 14 C -0.209 4.209 15 C 0.078 3.922 16 C -0.531 4.531 17 H 0.094 0.906 18 C -0.169 4.169 19 N -0.423 5.423 20 Si 0.794 3.206 21 H -0.186 1.186 22 H -0.184 1.184 23 H -0.182 1.182 24 C -0.265 4.265 25 C -0.096 4.096 26 C -0.169 4.169 27 C -0.109 4.109 28 H 0.067 0.933 29 H 0.074 0.926 30 H 0.112 0.888 31 H 0.081 0.919 32 H 0.097 0.903 33 H 0.174 0.826 34 H 0.176 0.824 35 H 0.263 0.737 36 H 0.253 0.747 37 H 0.143 0.857 38 H 0.119 0.881 39 H 0.105 0.895 40 H 0.108 0.892 41 H 0.120 0.880 42 H 0.127 0.873 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -16.631 -4.915 -15.067 22.973 hybrid contribution 0.923 0.088 0.348 0.990 sum -15.709 -4.827 -14.720 22.062 Atomic orbital electron populations 1.22938 0.79428 1.03754 1.01052 1.87937 1.21418 1.28314 1.95628 1.21364 0.88585 0.84859 1.02151 1.19804 0.95197 1.03792 0.93344 1.21148 0.93263 0.96960 0.98254 1.21152 0.94826 1.03865 0.96484 1.17774 0.81590 0.99768 0.94506 1.42357 1.04543 1.53110 1.32022 1.16174 0.82152 0.80194 0.82326 1.90906 1.70850 1.48832 1.37709 1.41754 1.03133 1.60112 1.24578 1.16860 0.96632 0.96475 0.98725 1.20411 0.95229 0.98698 0.97547 1.20644 1.01432 0.99665 0.99187 1.17924 0.90245 0.91982 0.92025 1.19729 1.20300 0.97716 1.15325 0.90608 1.26783 1.01642 0.94663 0.93846 1.69971 1.34911 1.09257 1.28143 0.85328 0.76685 0.79637 0.78919 1.18633 1.18441 1.18228 1.20678 0.97860 1.03790 1.04178 1.20442 0.98050 0.94346 0.96789 1.21255 0.94740 1.02933 0.97947 1.21040 0.93031 0.98184 0.98668 0.93348 0.92564 0.88817 0.91947 0.90316 0.82615 0.82443 0.73654 0.74701 0.85736 0.88128 0.89476 0.89156 0.88023 0.87303 0.85489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 11.01 113.37 1.25 1.53 16 2 O -0.41 -7.92 10.69 -148.98 -1.59 -9.51 16 3 C 0.11 1.77 6.06 71.23 0.43 2.20 16 4 C -0.12 -2.58 5.51 -19.85 -0.11 -2.69 16 5 C -0.08 -1.41 9.69 22.25 0.22 -1.20 16 6 C -0.14 -2.76 9.97 22.39 0.22 -2.54 16 7 C 0.16 4.21 6.28 38.15 0.24 4.45 16 8 N -0.67 -16.97 5.34 -317.18 -1.69 -18.67 16 9 C 0.69 24.42 8.22 179.05 1.47 25.89 16 10 O -0.60 -27.27 11.36 -3.96 -0.04 -27.31 16 11 N -0.65 -21.89 5.30 -316.79 -1.68 -23.57 16 12 C 0.01 0.30 6.28 38.57 0.24 0.54 16 13 C -0.10 -4.43 9.90 22.14 0.22 -4.21 16 14 C -0.19 -9.84 8.75 22.48 0.20 -9.64 16 15 C 0.08 4.51 5.59 -21.28 -0.12 4.39 16 16 C -0.50 -27.67 8.94 23.39 0.21 -27.47 16 17 H 0.08 4.08 8.02 -2.91 -0.02 4.06 16 18 C 0.05 2.52 4.78 85.23 0.41 2.92 16 19 N -0.80 -41.31 11.70 21.82 0.26 -41.06 16 20 Si 0.97 37.44 29.66 68.60 2.03 39.47 16 21 H -0.26 -9.66 7.11 99.48 0.71 -8.96 16 22 H -0.26 -9.34 7.11 99.48 0.71 -8.63 16 23 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 24 C -0.24 -13.17 9.74 22.48 0.22 -12.95 16 25 C -0.08 -3.80 8.60 22.13 0.19 -3.61 16 26 C -0.15 -4.62 8.68 22.39 0.19 -4.43 16 27 C -0.09 -2.38 9.69 22.25 0.22 -2.16 16 28 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.06 0.95 8.09 -2.38 -0.02 0.93 16 32 H 0.08 0.94 8.08 -2.39 -0.02 0.92 16 33 H 0.16 1.82 8.06 -2.91 -0.02 1.79 16 34 H 0.16 1.97 8.06 -2.91 -0.02 1.95 16 35 H 0.42 6.90 8.84 -92.71 -0.82 6.08 16 36 H 0.42 10.03 8.84 -92.70 -0.82 9.21 16 37 H 0.12 4.62 8.06 -2.91 -0.02 4.60 16 38 H 0.10 5.30 6.43 -2.91 -0.02 5.28 16 39 H 0.29 13.47 8.30 -92.71 -0.77 12.70 16 40 H 0.09 4.73 8.06 -2.91 -0.02 4.70 16 41 H 0.10 5.11 6.33 -2.91 -0.02 5.10 16 42 H 0.11 4.13 6.31 -2.91 -0.02 4.12 16 43 H 0.13 3.06 8.06 -2.91 -0.02 3.04 16 Total: -1.00 -72.53 367.02 2.39 -70.14 By element: Atomic # 1 Polarization: 40.05 SS G_CDS: -0.58 Total: 39.47 kcal Atomic # 6 Polarization: -34.66 SS G_CDS: 5.70 Total: -28.97 kcal Atomic # 7 Polarization: -80.18 SS G_CDS: -3.12 Total: -83.30 kcal Atomic # 8 Polarization: -35.19 SS G_CDS: -1.64 Total: -36.82 kcal Atomic # 14 Polarization: 37.44 SS G_CDS: 2.03 Total: 39.47 kcal Total: -72.53 2.39 -70.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193364469.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.560 kcal (2) G-P(sol) polarization free energy of solvation -72.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds