Wall clock time and date at job start Tue Mar 31 2020 14:16:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46505 * 120.00322 * 2 1 4 4 C 1.52996 * 109.46890 * 90.00114 * 3 2 1 5 5 C 1.50705 * 109.46967 * 180.02562 * 4 3 2 6 6 C 1.38227 * 119.61742 * 125.02141 * 5 4 3 7 7 C 1.38628 * 119.16125 * 179.75007 * 6 5 4 8 8 C 1.38675 * 118.41945 * 0.47112 * 7 6 5 9 9 C 1.38182 * 119.16091 * 359.50855 * 8 7 6 10 10 N 1.31849 * 119.61577 * 305.00195 * 5 4 3 11 11 C 1.34778 * 119.99962 * 180.02562 * 2 1 3 12 12 O 1.21591 * 119.99973 * 181.91973 * 11 2 1 13 13 C 1.47540 * 119.99730 * 1.91004 * 11 2 1 14 14 C 1.39668 * 120.19761 * 25.21505 * 13 11 2 15 15 C 1.37819 * 119.91666 * 180.02562 * 14 13 11 16 16 C 1.38576 * 120.32888 * 359.97438 * 15 14 13 17 17 C 1.38024 * 120.39963 * 0.02772 * 16 15 14 18 18 C 1.38837 * 120.06724 * 359.67086 * 17 16 15 19 19 O 1.35525 * 120.15866 * 180.29918 * 18 17 16 20 20 C 1.34811 * 116.99910 * 354.42766 * 19 18 17 21 21 H 1.07994 * 120.00309 * 5.06841 * 20 19 18 22 22 C 1.38702 * 119.99732 * 185.06812 * 20 19 18 23 23 N 1.31517 * 120.00097 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99883 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.46797 * 90.00000 * 24 22 20 26 26 H 1.48493 * 109.47368 * 210.00083 * 24 22 20 27 27 H 1.48499 * 109.47150 * 330.00184 * 24 22 20 28 28 H 1.08999 * 109.47096 * 84.07829 * 1 2 3 29 29 H 1.08992 * 109.47173 * 204.08348 * 1 2 3 30 30 H 1.09000 * 109.46869 * 324.08483 * 1 2 3 31 31 H 1.09002 * 109.46695 * 330.00085 * 3 2 1 32 32 H 1.08994 * 109.46926 * 210.00281 * 3 2 1 33 33 H 1.08995 * 109.47086 * 60.00506 * 4 3 2 34 34 H 1.09007 * 109.47239 * 300.00015 * 4 3 2 35 35 H 1.08003 * 120.41732 * 359.95608 * 6 5 4 36 36 H 1.08004 * 120.79192 * 180.23430 * 7 6 5 37 37 H 1.07993 * 120.42001 * 179.78845 * 8 7 6 38 38 H 1.08001 * 119.61616 * 180.25644 * 9 8 7 39 39 H 1.08001 * 120.03596 * 359.97438 * 14 13 11 40 40 H 1.08002 * 119.83894 * 179.97438 * 15 14 13 41 41 H 1.08000 * 119.79767 * 180.02562 * 16 15 14 42 42 H 1.07997 * 119.96512 * 179.97438 * 17 16 15 43 43 H 0.97011 * 119.99824 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7103 1.4425 5 6 3.2056 3.0157 1.4425 6 6 2.6946 4.0991 2.1323 7 6 3.3978 5.2939 2.1303 8 6 4.5890 5.3574 1.4232 9 6 5.0376 4.2328 0.7574 10 7 4.3444 3.1110 0.7849 11 6 2.1389 -1.1672 -0.0005 12 8 3.3543 -1.1675 0.0348 13 6 1.4017 -2.4445 -0.0437 14 6 0.1200 -2.4977 -0.5962 15 6 -0.5635 -3.6938 -0.6330 16 6 0.0146 -4.8461 -0.1247 17 6 1.2804 -4.8088 0.4243 18 6 1.9863 -3.6140 0.4642 19 8 3.2317 -3.5765 0.9974 20 6 3.6838 -4.7069 1.5765 21 1 3.0950 -5.6109 1.5287 22 6 4.9053 -4.7087 2.2337 23 7 5.6221 -3.6076 2.2923 24 14 5.5315 -6.2748 3.0367 25 1 6.3387 -7.0450 2.0565 26 1 6.3750 -5.9273 4.2083 27 1 4.3785 -7.0972 3.4834 28 1 -0.3633 0.1060 -1.0222 29 1 -0.3633 -0.9381 0.4193 30 1 -0.3633 0.8323 0.6028 31 1 1.6085 2.0284 -0.5138 32 1 3.1499 1.1383 -0.5139 33 1 3.0417 0.9507 1.9562 34 1 1.5001 1.8407 1.9564 35 1 1.7611 4.0149 2.6688 36 1 3.0247 6.1558 2.6636 37 1 5.1612 6.2729 1.3970 38 1 5.9665 4.2728 0.2078 39 1 -0.3350 -1.6023 -0.9932 40 1 -1.5547 -3.7334 -1.0602 41 1 -0.5287 -5.7789 -0.1584 42 1 1.7240 -5.7110 0.8188 43 1 6.4762 -3.6089 2.7523 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193867238.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:34 Heat of formation + Delta-G solvation = 29.282154 kcal Electronic energy + Delta-G solvation = -26880.241205 eV Core-core repulsion = 23085.562160 eV Total energy + Delta-G solvation = -3794.679045 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.28284 -39.75781 -38.20828 -36.38296 -35.28501 -33.34735 -32.36124 -32.30936 -30.80551 -28.95627 -28.81418 -26.51440 -25.40366 -24.50282 -23.51590 -22.34333 -21.63464 -21.10570 -19.10212 -18.02833 -17.01430 -16.90592 -16.35532 -16.11124 -15.81096 -15.36149 -14.90374 -14.72703 -14.30506 -14.22086 -13.92221 -13.79351 -13.50654 -13.37872 -13.18144 -13.02046 -12.59447 -12.41881 -12.36094 -12.04174 -11.90131 -11.63958 -11.60903 -11.24624 -10.99953 -10.85860 -10.77676 -10.52470 -10.33933 -9.92834 -9.52362 -9.38972 -9.03821 -8.85072 -8.80564 -8.17303 -8.15512 -7.27362 -6.41635 -4.01837 1.05549 1.23281 1.78544 2.34263 3.13687 3.14591 3.19352 3.46160 3.73611 3.79583 3.95940 4.32598 4.61175 4.67238 4.77997 4.97820 5.05100 5.09598 5.13853 5.16109 5.33878 5.40734 5.47299 5.49051 5.59316 5.64973 5.66782 5.70069 5.79350 5.90443 6.00101 6.04791 6.08533 6.18268 6.31331 6.36976 6.60395 6.66667 6.71219 6.95100 7.03909 7.09543 7.28636 7.32287 7.73179 7.92483 8.03008 8.04363 8.98222 9.09332 9.70392 10.72526 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.010717 B = 0.003683 C = 0.002851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2612.100601 B = 7600.699592 C = 9817.408364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.628 5.628 3 C 0.134 3.866 4 C -0.089 4.089 5 C 0.143 3.857 6 C -0.174 4.174 7 C -0.076 4.076 8 C -0.186 4.186 9 C 0.104 3.896 10 N -0.473 5.473 11 C 0.559 3.441 12 O -0.498 6.498 13 C -0.225 4.225 14 C -0.059 4.059 15 C -0.233 4.233 16 C -0.052 4.052 17 C -0.239 4.239 18 C 0.190 3.810 19 O -0.131 6.131 20 C -0.403 4.403 21 H 0.094 0.906 22 C 0.044 3.956 23 N -0.835 5.835 24 Si 0.940 3.060 25 H -0.272 1.272 26 H -0.277 1.277 27 H -0.266 1.266 28 H 0.052 0.948 29 H 0.095 0.905 30 H 0.057 0.943 31 H 0.066 0.934 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.076 0.924 35 H 0.133 0.867 36 H 0.131 0.869 37 H 0.132 0.868 38 H 0.155 0.845 39 H 0.135 0.865 40 H 0.109 0.891 41 H 0.109 0.891 42 H 0.131 0.869 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.100 13.702 -1.526 17.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.364 5.364 3 C 0.010 3.990 4 C -0.128 4.128 5 C 0.005 3.995 6 C -0.194 4.194 7 C -0.102 4.102 8 C -0.206 4.206 9 C -0.053 4.053 10 N -0.182 5.182 11 C 0.349 3.651 12 O -0.372 6.372 13 C -0.230 4.230 14 C -0.077 4.077 15 C -0.252 4.252 16 C -0.071 4.071 17 C -0.258 4.258 18 C 0.131 3.869 19 O -0.030 6.030 20 C -0.479 4.479 21 H 0.111 0.889 22 C -0.163 4.163 23 N -0.467 5.467 24 Si 0.764 3.236 25 H -0.197 1.197 26 H -0.202 1.202 27 H -0.191 1.191 28 H 0.070 0.930 29 H 0.113 0.887 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.112 0.888 33 H 0.113 0.887 34 H 0.095 0.905 35 H 0.151 0.849 36 H 0.149 0.851 37 H 0.149 0.851 38 H 0.172 0.828 39 H 0.152 0.848 40 H 0.127 0.873 41 H 0.127 0.873 42 H 0.149 0.851 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.645 13.220 -1.821 15.900 hybrid contribution -0.137 0.011 0.946 0.956 sum -8.782 13.231 -0.876 15.905 Atomic orbital electron populations 1.22390 0.80847 1.03757 1.00613 1.47733 1.06231 1.05692 1.76725 1.21154 0.98357 0.84386 0.95066 1.20989 0.99092 0.93115 0.99642 1.21272 0.91156 0.95178 0.91873 1.21998 1.01766 0.93779 1.01833 1.21545 0.94325 0.97695 0.96631 1.22115 0.97885 1.00385 1.00221 1.22830 0.98650 0.87953 0.95874 1.67590 1.06230 1.26617 1.17781 1.18308 0.87314 0.82992 0.76444 1.90909 1.12955 1.86464 1.46852 1.18802 0.96777 0.91909 1.15484 1.21552 0.92319 0.98140 0.95676 1.20501 1.01017 0.93224 1.10456 1.20904 0.94175 0.97385 0.94586 1.21139 0.96792 0.98463 1.09446 1.19263 0.85263 0.91774 0.90584 1.84128 1.22399 1.36507 1.59956 1.21463 1.04544 0.88013 1.33845 0.88890 1.25374 0.95433 0.98829 0.96674 1.70121 1.12098 1.26505 1.37949 0.85736 0.79159 0.79900 0.78758 1.19730 1.20169 1.19086 0.92956 0.88708 0.92424 0.91600 0.88801 0.88672 0.90502 0.84909 0.85078 0.85052 0.82784 0.84800 0.87300 0.87295 0.85148 0.91866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.83 8.72 59.85 0.52 1.35 16 2 N -0.63 -10.79 2.87 -182.81 -0.53 -11.31 16 3 C 0.13 2.12 5.28 -4.04 -0.02 2.10 16 4 C -0.09 -1.35 5.94 -27.88 -0.17 -1.52 16 5 C 0.14 2.04 6.18 -82.59 -0.51 1.53 16 6 C -0.17 -1.93 9.71 -39.44 -0.38 -2.32 16 7 C -0.08 -0.73 10.18 -39.28 -0.40 -1.12 16 8 C -0.19 -1.82 10.11 -39.44 -0.40 -2.22 16 9 C 0.10 1.28 11.18 -17.55 -0.20 1.08 16 10 N -0.47 -7.42 9.88 -9.47 -0.09 -7.51 16 11 C 0.56 12.70 7.44 -12.47 -0.09 12.61 16 12 O -0.50 -13.96 15.18 -14.85 -0.23 -14.18 16 13 C -0.22 -4.98 5.55 -104.81 -0.58 -5.56 16 14 C -0.06 -1.02 7.50 -39.20 -0.29 -1.31 16 15 C -0.23 -3.82 10.02 -39.61 -0.40 -4.22 16 16 C -0.05 -0.92 10.03 -39.54 -0.40 -1.32 16 17 C -0.24 -5.20 9.16 -39.44 -0.36 -5.57 16 18 C 0.19 4.79 6.63 -38.60 -0.26 4.54 16 19 O -0.13 -3.93 8.14 -19.34 -0.16 -4.09 16 20 C -0.40 -11.55 9.49 30.90 0.29 -11.25 16 21 H 0.09 2.42 5.21 -52.49 -0.27 2.15 16 22 C 0.04 1.25 5.49 -17.52 -0.10 1.16 16 23 N -0.84 -25.56 13.67 55.48 0.76 -24.80 16 24 Si 0.94 20.81 29.55 -169.99 -5.02 15.79 16 25 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 26 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 27 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 28 H 0.05 0.54 7.30 -51.93 -0.38 0.16 16 29 H 0.09 1.25 4.81 -51.93 -0.25 1.00 16 30 H 0.06 0.57 8.12 -51.93 -0.42 0.15 16 31 H 0.07 0.84 8.07 -51.93 -0.42 0.42 16 32 H 0.09 1.79 7.25 -51.93 -0.38 1.41 16 33 H 0.09 1.82 8.14 -51.93 -0.42 1.39 16 34 H 0.08 0.95 7.87 -51.92 -0.41 0.54 16 35 H 0.13 1.16 7.95 -52.48 -0.42 0.74 16 36 H 0.13 0.86 8.06 -52.48 -0.42 0.43 16 37 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 38 H 0.15 1.52 8.06 -52.49 -0.42 1.10 16 39 H 0.13 1.84 4.37 -52.49 -0.23 1.61 16 40 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 41 H 0.11 1.59 8.06 -52.49 -0.42 1.16 16 42 H 0.13 2.81 5.64 -52.49 -0.30 2.51 16 43 H 0.27 7.59 8.31 -40.82 -0.34 7.26 16 LS Contribution 362.54 15.07 5.46 5.46 Total: -1.00 -36.75 362.54 -8.68 -45.43 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -5.14 Total: 7.24 kcal Atomic # 6 Polarization: -8.29 SS G_CDS: -3.74 Total: -12.03 kcal Atomic # 7 Polarization: -43.77 SS G_CDS: 0.14 Total: -43.63 kcal Atomic # 8 Polarization: -17.89 SS G_CDS: -0.38 Total: -18.27 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -36.75 -8.68 -45.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193867238.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.715 kcal (2) G-P(sol) polarization free energy of solvation -36.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.433 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds