Wall clock time and date at job start Tue Mar 31 2020 14:16:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46505 * 120.00322 * 2 1 4 4 C 1.52996 * 109.46890 * 90.00114 * 3 2 1 5 5 C 1.50705 * 109.46967 * 180.02562 * 4 3 2 6 6 C 1.38227 * 119.61742 * 125.02141 * 5 4 3 7 7 C 1.38628 * 119.16125 * 179.75007 * 6 5 4 8 8 C 1.38675 * 118.41945 * 0.47112 * 7 6 5 9 9 C 1.38182 * 119.16091 * 359.50855 * 8 7 6 10 10 N 1.31849 * 119.61577 * 305.00195 * 5 4 3 11 11 C 1.34778 * 119.99962 * 180.02562 * 2 1 3 12 12 O 1.21591 * 119.99973 * 181.91973 * 11 2 1 13 13 C 1.47540 * 119.99730 * 1.91004 * 11 2 1 14 14 C 1.39668 * 120.19761 * 25.21505 * 13 11 2 15 15 C 1.37819 * 119.91666 * 180.02562 * 14 13 11 16 16 C 1.38576 * 120.32888 * 359.97438 * 15 14 13 17 17 C 1.38024 * 120.39963 * 0.02772 * 16 15 14 18 18 C 1.38837 * 120.06724 * 359.67086 * 17 16 15 19 19 O 1.35525 * 120.15866 * 180.29918 * 18 17 16 20 20 C 1.34811 * 116.99910 * 354.42766 * 19 18 17 21 21 H 1.07994 * 120.00309 * 5.06841 * 20 19 18 22 22 C 1.38702 * 119.99732 * 185.06812 * 20 19 18 23 23 N 1.31517 * 120.00097 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99883 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.46797 * 90.00000 * 24 22 20 26 26 H 1.48493 * 109.47368 * 210.00083 * 24 22 20 27 27 H 1.48499 * 109.47150 * 330.00184 * 24 22 20 28 28 H 1.08999 * 109.47096 * 84.07829 * 1 2 3 29 29 H 1.08992 * 109.47173 * 204.08348 * 1 2 3 30 30 H 1.09000 * 109.46869 * 324.08483 * 1 2 3 31 31 H 1.09002 * 109.46695 * 330.00085 * 3 2 1 32 32 H 1.08994 * 109.46926 * 210.00281 * 3 2 1 33 33 H 1.08995 * 109.47086 * 60.00506 * 4 3 2 34 34 H 1.09007 * 109.47239 * 300.00015 * 4 3 2 35 35 H 1.08003 * 120.41732 * 359.95608 * 6 5 4 36 36 H 1.08004 * 120.79192 * 180.23430 * 7 6 5 37 37 H 1.07993 * 120.42001 * 179.78845 * 8 7 6 38 38 H 1.08001 * 119.61616 * 180.25644 * 9 8 7 39 39 H 1.08001 * 120.03596 * 359.97438 * 14 13 11 40 40 H 1.08002 * 119.83894 * 179.97438 * 15 14 13 41 41 H 1.08000 * 119.79767 * 180.02562 * 16 15 14 42 42 H 1.07997 * 119.96512 * 179.97438 * 17 16 15 43 43 H 0.97011 * 119.99824 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7103 1.4425 5 6 3.2056 3.0157 1.4425 6 6 2.6946 4.0991 2.1323 7 6 3.3978 5.2939 2.1303 8 6 4.5890 5.3574 1.4232 9 6 5.0376 4.2328 0.7574 10 7 4.3444 3.1110 0.7849 11 6 2.1389 -1.1672 -0.0005 12 8 3.3543 -1.1675 0.0348 13 6 1.4017 -2.4445 -0.0437 14 6 0.1200 -2.4977 -0.5962 15 6 -0.5635 -3.6938 -0.6330 16 6 0.0146 -4.8461 -0.1247 17 6 1.2804 -4.8088 0.4243 18 6 1.9863 -3.6140 0.4642 19 8 3.2317 -3.5765 0.9974 20 6 3.6838 -4.7069 1.5765 21 1 3.0950 -5.6109 1.5287 22 6 4.9053 -4.7087 2.2337 23 7 5.6221 -3.6076 2.2923 24 14 5.5315 -6.2748 3.0367 25 1 6.3387 -7.0450 2.0565 26 1 6.3750 -5.9273 4.2083 27 1 4.3785 -7.0972 3.4834 28 1 -0.3633 0.1060 -1.0222 29 1 -0.3633 -0.9381 0.4193 30 1 -0.3633 0.8323 0.6028 31 1 1.6085 2.0284 -0.5138 32 1 3.1499 1.1383 -0.5139 33 1 3.0417 0.9507 1.9562 34 1 1.5001 1.8407 1.9564 35 1 1.7611 4.0149 2.6688 36 1 3.0247 6.1558 2.6636 37 1 5.1612 6.2729 1.3970 38 1 5.9665 4.2728 0.2078 39 1 -0.3350 -1.6023 -0.9932 40 1 -1.5547 -3.7334 -1.0602 41 1 -0.5287 -5.7789 -0.1584 42 1 1.7240 -5.7110 0.8188 43 1 6.4762 -3.6089 2.7523 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193867238.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:34 Heat of formation + Delta-G solvation = 4.002546 kcal Electronic energy + Delta-G solvation = -26881.337411 eV Core-core repulsion = 23085.562160 eV Total energy + Delta-G solvation = -3795.775251 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.55321 -41.08535 -39.92428 -38.10038 -36.84595 -34.51284 -34.32770 -33.27881 -32.20758 -30.63232 -29.99874 -27.76122 -27.41352 -25.82515 -24.42268 -23.75447 -23.15402 -22.36314 -20.67546 -19.89980 -18.67682 -18.01152 -17.77230 -17.19558 -17.13670 -16.51806 -16.45873 -16.24934 -15.81053 -15.76210 -15.43310 -15.34326 -15.02071 -14.56555 -14.43161 -14.17148 -14.09288 -13.85092 -13.62472 -13.58099 -13.29757 -13.20015 -12.91632 -12.56231 -12.52573 -12.44295 -12.16846 -12.08631 -11.85646 -11.39344 -10.84470 -10.81712 -10.57901 -10.32988 -9.99558 -9.75573 -9.54444 -9.01267 -8.46257 -6.17691 0.15136 0.18279 0.39606 0.73191 1.29911 1.42083 1.49700 1.99340 2.14513 2.16339 2.84378 2.86017 3.20297 3.37128 3.45296 3.76967 3.78072 4.00906 4.06870 4.12035 4.17447 4.25166 4.28223 4.32628 4.34096 4.45808 4.58295 4.63176 4.67313 4.70851 4.81621 4.91478 4.94666 5.00988 5.07102 5.07682 5.15461 5.25259 5.26719 5.51023 5.60075 5.68577 5.72146 5.82451 5.94564 6.19595 6.49568 6.93224 7.12296 7.42639 7.79805 8.74838 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.010717 B = 0.003683 C = 0.002851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2612.100601 B = 7600.699592 C = 9817.408364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.054 3.946 2 N -0.617 5.617 3 C 0.137 3.863 4 C -0.079 4.079 5 C 0.111 3.889 6 C -0.167 4.167 7 C -0.072 4.072 8 C -0.172 4.172 9 C 0.079 3.921 10 N -0.527 5.527 11 C 0.546 3.454 12 O -0.574 6.574 13 C -0.242 4.242 14 C -0.048 4.048 15 C -0.200 4.200 16 C -0.042 4.042 17 C -0.259 4.259 18 C 0.147 3.853 19 O -0.199 6.199 20 C -0.425 4.425 21 H 0.108 0.892 22 C -0.024 4.024 23 N -0.911 5.911 24 Si 1.023 2.977 25 H -0.263 1.263 26 H -0.272 1.272 27 H -0.245 1.245 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.094 0.906 31 H 0.109 0.891 32 H 0.048 0.952 33 H 0.034 0.966 34 H 0.110 0.890 35 H 0.161 0.839 36 H 0.173 0.827 37 H 0.167 0.833 38 H 0.164 0.836 39 H 0.180 0.820 40 H 0.167 0.833 41 H 0.154 0.846 42 H 0.122 0.878 43 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.430 15.115 -2.060 21.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 N -0.350 5.350 3 C 0.014 3.986 4 C -0.118 4.118 5 C -0.027 4.027 6 C -0.186 4.186 7 C -0.098 4.098 8 C -0.192 4.192 9 C -0.078 4.078 10 N -0.237 5.237 11 C 0.338 3.662 12 O -0.453 6.453 13 C -0.247 4.247 14 C -0.065 4.065 15 C -0.218 4.218 16 C -0.060 4.060 17 C -0.278 4.278 18 C 0.093 3.907 19 O -0.102 6.102 20 C -0.501 4.501 21 H 0.125 0.875 22 C -0.223 4.223 23 N -0.547 5.547 24 Si 0.841 3.159 25 H -0.187 1.187 26 H -0.197 1.197 27 H -0.168 1.168 28 H 0.107 0.893 29 H 0.108 0.892 30 H 0.112 0.888 31 H 0.127 0.873 32 H 0.066 0.934 33 H 0.053 0.947 34 H 0.128 0.872 35 H 0.179 0.821 36 H 0.190 0.810 37 H 0.185 0.815 38 H 0.181 0.819 39 H 0.197 0.803 40 H 0.185 0.815 41 H 0.171 0.829 42 H 0.139 0.861 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -14.112 14.656 -2.391 20.486 hybrid contribution 1.084 -0.215 0.891 1.420 sum -13.027 14.442 -1.500 19.507 Atomic orbital electron populations 1.22769 0.77101 1.05175 1.03603 1.47782 1.08503 1.04383 1.74356 1.21189 0.97080 0.84559 0.95778 1.20828 0.99802 0.92530 0.98594 1.21200 0.91601 0.95688 0.94172 1.22264 1.02696 0.93160 1.00526 1.22058 0.93636 0.98226 0.95866 1.22506 0.97998 1.00456 0.98195 1.23171 0.99201 0.88246 0.97187 1.67458 1.07687 1.28927 1.19663 1.18723 0.86697 0.84936 0.75860 1.90876 1.16280 1.87678 1.50471 1.19248 0.98750 0.90884 1.15826 1.22120 0.89902 1.00766 0.93753 1.21242 1.02537 0.91530 1.06534 1.21448 0.92235 1.00126 0.92152 1.21279 0.98677 0.96962 1.10908 1.20083 0.85024 0.94338 0.91254 1.84138 1.25325 1.37349 1.63402 1.22027 1.05278 0.88637 1.34184 0.87524 1.26797 0.95369 1.02927 0.97200 1.70335 1.13116 1.29918 1.41316 0.84552 0.78927 0.74842 0.77560 1.18746 1.19700 1.16816 0.89298 0.89160 0.88755 0.87302 0.93371 0.94698 0.87176 0.82121 0.80985 0.81505 0.81856 0.80285 0.81523 0.82867 0.86069 0.92117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.12 8.72 127.77 1.11 2.24 16 2 N -0.62 -21.37 2.87 -850.56 -2.44 -23.82 16 3 C 0.14 4.53 5.28 86.38 0.46 4.98 16 4 C -0.08 -2.53 5.94 29.85 0.18 -2.35 16 5 C 0.11 3.28 6.18 42.56 0.26 3.55 16 6 C -0.17 -3.39 9.71 22.36 0.22 -3.18 16 7 C -0.07 -1.15 10.18 22.47 0.23 -0.92 16 8 C -0.17 -3.01 10.11 22.36 0.23 -2.79 16 9 C 0.08 2.00 11.18 84.67 0.95 2.94 16 10 N -0.53 -17.89 9.88 -183.88 -1.82 -19.71 16 11 C 0.55 26.59 7.44 86.70 0.64 27.24 16 12 O -0.57 -36.10 15.18 15.25 0.23 -35.87 16 13 C -0.24 -11.00 5.55 -19.99 -0.11 -11.11 16 14 C -0.05 -1.48 7.50 22.52 0.17 -1.31 16 15 C -0.20 -5.37 10.02 22.25 0.22 -5.15 16 16 C -0.04 -1.32 10.03 22.30 0.22 -1.09 16 17 C -0.26 -11.41 9.16 22.36 0.20 -11.20 16 18 C 0.15 7.89 6.63 22.91 0.15 8.04 16 19 O -0.20 -13.16 8.14 -0.83 -0.01 -13.17 16 20 C -0.43 -26.58 9.49 67.93 0.64 -25.93 16 21 H 0.11 5.96 5.21 -2.91 -0.02 5.95 16 22 C -0.02 -1.50 5.49 84.85 0.47 -1.03 16 23 N -0.91 -61.79 13.67 21.62 0.30 -61.49 16 24 Si 1.02 45.63 29.55 68.60 2.03 47.66 16 25 H -0.26 -11.13 7.11 99.48 0.71 -10.43 16 26 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 27 H -0.24 -9.86 7.11 99.48 0.71 -9.15 16 28 H 0.09 1.29 7.30 -2.39 -0.02 1.28 16 29 H 0.09 2.00 4.81 -2.39 -0.01 1.99 16 30 H 0.09 1.37 8.12 -2.39 -0.02 1.35 16 31 H 0.11 2.63 8.07 -2.39 -0.02 2.61 16 32 H 0.05 2.04 7.25 -2.39 -0.02 2.03 16 33 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.11 2.64 7.87 -2.38 -0.02 2.62 16 35 H 0.16 2.25 7.95 -2.91 -0.02 2.22 16 36 H 0.17 1.34 8.06 -2.91 -0.02 1.32 16 37 H 0.17 1.67 8.06 -2.91 -0.02 1.65 16 38 H 0.16 3.48 8.06 -2.91 -0.02 3.46 16 39 H 0.18 3.88 4.37 -2.91 -0.01 3.87 16 40 H 0.17 2.80 8.06 -2.91 -0.02 2.78 16 41 H 0.15 3.56 8.06 -2.91 -0.02 3.54 16 42 H 0.12 5.42 5.64 -2.91 -0.02 5.41 16 43 H 0.27 16.80 8.31 -92.70 -0.77 16.03 16 Total: -1.00 -100.06 362.54 5.57 -94.48 By element: Atomic # 1 Polarization: 27.94 SS G_CDS: 1.04 Total: 28.98 kcal Atomic # 6 Polarization: -23.32 SS G_CDS: 6.25 Total: -17.07 kcal Atomic # 7 Polarization: -101.05 SS G_CDS: -3.97 Total: -105.01 kcal Atomic # 8 Polarization: -49.27 SS G_CDS: 0.22 Total: -49.04 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.66 kcal Total: -100.06 5.57 -94.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193867238.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.485 kcal (2) G-P(sol) polarization free energy of solvation -100.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds