Wall clock time and date at job start Tue Mar 31 2020 14:14:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46902 * 111.00074 * 2 1 4 4 C 1.39898 * 110.99892 * 123.95240 * 2 1 3 5 5 C 1.38711 * 120.10080 * 299.99673 * 4 2 1 6 6 C 1.38223 * 119.99648 * 179.72572 * 5 4 2 7 7 C 1.38281 * 120.19799 * 0.30107 * 6 5 4 8 8 C 1.38234 * 120.20345 * 0.02562 * 7 6 5 9 9 C 1.38679 * 119.99492 * 359.97312 * 8 7 6 10 10 N 1.40092 * 120.09402 * 180.02562 * 9 8 7 11 11 C 1.34774 * 119.99811 * 325.42412 * 10 9 8 12 12 O 1.21608 * 120.00364 * 4.38348 * 11 10 9 13 13 C 1.47513 * 119.99753 * 184.38329 * 11 10 9 14 14 C 1.39676 * 120.19357 * 359.97438 * 13 11 10 15 15 C 1.37833 * 119.91425 * 180.02562 * 14 13 11 16 16 C 1.38572 * 120.32285 * 0.02562 * 15 14 13 17 17 C 1.38028 * 120.40580 * 359.97438 * 16 15 14 18 18 C 1.38833 * 120.07471 * 359.72019 * 17 16 15 19 19 O 1.35515 * 120.16717 * 180.30231 * 18 17 16 20 20 C 1.34819 * 116.99799 * 5.45006 * 19 18 17 21 21 H 1.08000 * 119.99829 * 354.94594 * 20 19 18 22 22 C 1.38701 * 119.99841 * 174.95549 * 20 19 18 23 23 N 1.31515 * 119.99744 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99684 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47153 * 59.99907 * 24 22 20 26 26 H 1.48497 * 109.46983 * 179.97438 * 24 22 20 27 27 H 1.48491 * 109.47209 * 299.99815 * 24 22 20 28 28 H 1.09005 * 109.46742 * 296.04669 * 1 2 3 29 29 H 1.08992 * 109.46787 * 56.04726 * 1 2 3 30 30 H 1.08997 * 109.46896 * 176.04739 * 1 2 3 31 31 H 1.08995 * 109.47602 * 183.95472 * 3 2 1 32 32 H 1.09006 * 109.46988 * 303.95619 * 3 2 1 33 33 H 1.08998 * 109.47486 * 63.95192 * 3 2 1 34 34 H 1.08002 * 120.00197 * 0.02562 * 5 4 2 35 35 H 1.08008 * 119.90398 * 180.28376 * 6 5 4 36 36 H 1.08006 * 119.89995 * 179.97438 * 7 6 5 37 37 H 1.08002 * 119.99796 * 180.02562 * 8 7 6 38 38 H 0.96997 * 119.99494 * 145.42847 * 10 9 8 39 39 H 1.07999 * 120.04583 * 0.03005 * 14 13 11 40 40 H 1.07997 * 119.84130 * 180.02562 * 15 14 13 41 41 H 1.08003 * 119.79728 * 179.97438 * 16 15 14 42 42 H 1.08003 * 119.96542 * 180.02562 * 17 16 15 43 43 H 0.97011 * 119.99449 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9704 -0.7294 1.0834 5 6 1.6596 -0.3501 2.3809 6 6 2.1514 -1.0758 3.4496 7 6 2.9587 -2.1768 3.2301 8 6 3.2792 -2.5581 1.9406 9 6 2.7902 -1.8360 0.8623 10 7 3.1133 -2.2209 -0.4454 11 6 4.3244 -2.7482 -0.7129 12 8 5.1072 -2.9638 0.1925 13 6 4.7005 -3.0637 -2.1039 14 6 3.8044 -2.8182 -3.1468 15 6 4.1616 -3.1157 -4.4444 16 6 5.4064 -3.6584 -4.7204 17 6 6.3023 -3.9064 -3.7000 18 6 5.9622 -3.6072 -2.3877 19 8 6.8426 -3.8443 -1.3851 20 6 8.0734 -4.2661 -1.7384 21 1 8.2948 -4.4788 -2.7739 22 6 9.0553 -4.4270 -0.7721 23 7 8.7857 -4.1677 0.4888 24 14 10.7604 -5.0121 -1.2615 25 1 11.3570 -4.0499 -2.2225 26 1 11.6190 -5.1010 -0.0532 27 1 10.6609 -6.3500 -1.8981 28 1 -0.3633 0.4513 0.9234 29 1 -0.3632 0.5739 -0.8524 30 1 -0.3633 -1.0252 -0.0708 31 1 3.0828 1.3433 -0.0709 32 1 1.5898 1.9164 -0.8525 33 1 1.7045 1.8724 0.9232 34 1 1.0293 0.5092 2.5560 35 1 1.9047 -0.7818 4.4592 36 1 3.3408 -2.7401 4.0687 37 1 3.9097 -3.4188 1.7730 38 1 2.4653 -2.1078 -1.1582 39 1 2.8329 -2.3957 -2.9368 40 1 3.4680 -2.9250 -5.2499 41 1 5.6774 -3.8886 -5.7402 42 1 7.2707 -4.3291 -3.9233 43 1 9.4726 -4.2799 1.1646 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194188064.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:39 Heat of formation + Delta-G solvation = 16.742609 kcal Electronic energy + Delta-G solvation = -27344.886088 eV Core-core repulsion = 23549.663287 eV Total energy + Delta-G solvation = -3795.222801 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.39526 -39.30088 -37.99029 -36.43341 -36.22276 -34.10074 -32.35829 -30.92984 -29.82329 -28.97902 -28.71691 -27.68006 -25.41597 -24.52343 -23.65036 -22.19122 -21.34577 -20.82344 -19.76387 -18.16747 -17.79798 -17.05252 -16.33242 -16.20282 -15.36153 -15.04417 -14.74102 -14.61732 -14.39631 -14.24300 -14.20237 -13.85883 -13.62272 -13.52343 -13.15946 -12.76837 -12.62689 -12.52805 -12.28132 -12.09994 -11.78728 -11.72971 -11.65804 -11.34044 -11.20405 -11.09003 -10.89746 -10.81070 -10.48803 -9.88130 -9.57871 -8.92326 -8.88495 -8.64780 -8.49385 -8.31131 -7.70722 -7.31733 -6.46078 -4.05871 1.40174 1.53498 1.79291 2.31569 3.11151 3.13301 3.15680 3.57649 3.63284 3.81610 3.92438 4.04423 4.62467 4.98087 5.04666 5.06918 5.16466 5.18713 5.22518 5.30593 5.38294 5.40044 5.50024 5.54895 5.68454 5.70828 5.74095 5.81989 5.86603 6.03649 6.11162 6.14071 6.45026 6.47896 6.55620 6.66685 6.74270 6.78094 6.87454 6.92274 7.05212 7.09776 7.22443 7.27838 7.53024 7.67956 7.90128 8.06262 8.92858 8.98577 9.64778 10.67444 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.013058 B = 0.003920 C = 0.003177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2143.832179 B = 7140.810734 C = 8811.933227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.506 5.506 3 C 0.031 3.969 4 C 0.042 3.958 5 C -0.132 4.132 6 C -0.139 4.139 7 C -0.100 4.100 8 C -0.118 4.118 9 C 0.191 3.809 10 N -0.671 5.671 11 C 0.553 3.447 12 O -0.485 6.485 13 C -0.228 4.228 14 C -0.035 4.035 15 C -0.230 4.230 16 C -0.049 4.049 17 C -0.238 4.238 18 C 0.191 3.809 19 O -0.123 6.123 20 C -0.404 4.404 21 H 0.094 0.906 22 C 0.046 3.954 23 N -0.831 5.831 24 Si 0.941 3.059 25 H -0.269 1.269 26 H -0.277 1.277 27 H -0.268 1.268 28 H 0.029 0.971 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.029 0.971 34 H 0.116 0.884 35 H 0.117 0.883 36 H 0.124 0.876 37 H 0.148 0.852 38 H 0.408 0.592 39 H 0.114 0.886 40 H 0.110 0.890 41 H 0.111 0.889 42 H 0.132 0.868 43 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.629 6.814 -1.284 16.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.227 5.227 3 C -0.116 4.116 4 C -0.054 4.054 5 C -0.153 4.153 6 C -0.159 4.159 7 C -0.119 4.119 8 C -0.139 4.139 9 C 0.094 3.906 10 N -0.317 5.317 11 C 0.344 3.656 12 O -0.359 6.359 13 C -0.233 4.233 14 C -0.053 4.053 15 C -0.249 4.249 16 C -0.068 4.068 17 C -0.257 4.257 18 C 0.131 3.869 19 O -0.021 6.021 20 C -0.480 4.480 21 H 0.111 0.889 22 C -0.162 4.162 23 N -0.462 5.462 24 Si 0.765 3.235 25 H -0.194 1.194 26 H -0.201 1.201 27 H -0.193 1.193 28 H 0.047 0.953 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.047 0.953 34 H 0.134 0.866 35 H 0.135 0.865 36 H 0.142 0.858 37 H 0.166 0.834 38 H 0.245 0.755 39 H 0.131 0.869 40 H 0.128 0.872 41 H 0.129 0.871 42 H 0.150 0.850 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -13.700 6.425 -0.630 15.145 hybrid contribution 0.227 0.300 -0.018 0.377 sum -13.474 6.725 -0.648 15.073 Atomic orbital electron populations 1.22464 0.86431 1.02498 1.00590 1.59489 1.07937 1.14211 1.41035 1.22418 1.01391 0.87355 1.00392 1.18498 1.02693 0.95068 0.89180 1.21244 1.01360 1.00154 0.92539 1.20895 0.99900 0.96828 0.98278 1.21101 0.97228 0.96850 0.96731 1.21470 1.00461 1.00876 0.91118 1.17623 0.95661 0.92034 0.85256 1.43455 1.16795 1.63490 1.07995 1.18397 0.80426 0.77286 0.89514 1.90933 1.49375 1.49406 1.46142 1.18701 0.96018 1.16416 0.92200 1.20795 0.96777 0.95473 0.92288 1.20465 0.98154 1.10424 0.95850 1.20914 0.93124 0.94830 0.97886 1.21152 1.02109 1.10146 0.92269 1.19244 0.89337 0.90296 0.88052 1.84161 1.20438 1.68568 1.28909 1.21458 0.85157 1.45937 0.95449 0.88883 1.25379 0.99565 0.96611 0.94687 1.70115 1.34324 1.41548 1.00246 0.85798 0.80033 0.79371 0.78337 1.19359 1.20143 1.19344 0.95259 0.91094 0.91257 0.91012 0.91097 0.95278 0.86618 0.86466 0.85825 0.83449 0.75457 0.86851 0.87183 0.87133 0.85034 0.91778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.35 60.07 0.56 0.82 16 2 N -0.51 -6.19 4.47 -186.66 -0.83 -7.02 16 3 C 0.03 0.34 9.39 60.07 0.56 0.91 16 4 C 0.04 0.60 4.75 -83.54 -0.40 0.21 16 5 C -0.13 -1.70 8.57 -39.41 -0.34 -2.04 16 6 C -0.14 -1.80 10.04 -39.57 -0.40 -2.20 16 7 C -0.10 -1.49 10.04 -39.57 -0.40 -1.89 16 8 C -0.12 -2.13 8.70 -39.42 -0.34 -2.47 16 9 C 0.19 3.29 6.33 -83.46 -0.53 2.76 16 10 N -0.67 -11.85 5.12 -10.66 -0.05 -11.90 16 11 C 0.55 12.26 7.61 -12.48 -0.09 12.16 16 12 O -0.49 -12.99 12.58 -16.59 -0.21 -13.20 16 13 C -0.23 -4.96 5.89 -104.81 -0.62 -5.58 16 14 C -0.03 -0.60 9.53 -39.19 -0.37 -0.97 16 15 C -0.23 -3.75 10.03 -39.61 -0.40 -4.15 16 16 C -0.05 -0.86 10.03 -39.54 -0.40 -1.25 16 17 C -0.24 -5.05 9.16 -39.44 -0.36 -5.42 16 18 C 0.19 4.69 6.66 -38.59 -0.26 4.44 16 19 O -0.12 -3.58 7.84 -21.06 -0.16 -3.75 16 20 C -0.40 -11.34 9.49 30.90 0.29 -11.05 16 21 H 0.09 2.36 5.21 -52.49 -0.27 2.09 16 22 C 0.05 1.26 5.49 -17.52 -0.10 1.17 16 23 N -0.83 -24.82 13.67 55.48 0.76 -24.06 16 24 Si 0.94 20.38 29.55 -169.99 -5.02 15.36 16 25 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 26 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 27 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 28 H 0.03 0.25 7.13 -51.93 -0.37 -0.12 16 29 H 0.07 0.55 8.12 -51.93 -0.42 0.13 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.07 0.64 8.12 -51.93 -0.42 0.22 16 33 H 0.03 0.29 7.35 -51.93 -0.38 -0.09 16 34 H 0.12 1.24 7.02 -52.49 -0.37 0.87 16 35 H 0.12 1.20 8.06 -52.48 -0.42 0.78 16 36 H 0.12 1.60 8.06 -52.48 -0.42 1.18 16 37 H 0.15 3.07 6.19 -52.49 -0.32 2.74 16 38 H 0.41 6.10 6.54 -40.82 -0.27 5.83 16 39 H 0.11 1.57 6.41 -52.49 -0.34 1.23 16 40 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 41 H 0.11 1.57 8.06 -52.48 -0.42 1.15 16 42 H 0.13 2.75 5.64 -52.48 -0.30 2.46 16 43 H 0.27 7.44 8.31 -40.82 -0.34 7.11 16 LS Contribution 360.14 15.07 5.43 5.43 Total: -1.00 -33.45 360.14 -8.81 -42.26 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: -5.13 Total: 11.43 kcal Atomic # 6 Polarization: -10.98 SS G_CDS: -3.58 Total: -14.55 kcal Atomic # 7 Polarization: -42.85 SS G_CDS: -0.13 Total: -42.98 kcal Atomic # 8 Polarization: -16.57 SS G_CDS: -0.37 Total: -16.95 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.45 -8.81 -42.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194188064.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.005 kcal (2) G-P(sol) polarization free energy of solvation -33.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds