Wall clock time and date at job start Tue Mar 31 2020 14:14:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46496 * 120.00232 * 2 1 4 4 C 1.39902 * 119.99799 * 180.02562 * 2 1 3 5 5 C 1.38886 * 120.00202 * 185.68889 * 4 2 1 6 6 C 1.38061 * 120.00029 * 180.25279 * 5 4 2 7 7 C 1.38870 * 119.99847 * 359.45103 * 6 5 4 8 8 N 1.40076 * 119.99907 * 180.27649 * 7 6 5 9 9 C 1.34781 * 119.99981 * 324.84859 * 8 7 6 10 10 O 1.21616 * 119.99659 * 4.45588 * 9 8 7 11 11 C 1.47507 * 120.00093 * 184.44892 * 9 8 7 12 12 C 1.39671 * 120.19495 * 0.02562 * 11 9 8 13 13 C 1.37831 * 119.91351 * 180.02562 * 12 11 9 14 14 C 1.38570 * 120.32473 * 0.02562 * 13 12 11 15 15 C 1.38025 * 120.40513 * 0.02562 * 14 13 12 16 16 C 1.38828 * 120.07363 * 359.67491 * 15 14 13 17 17 O 1.35523 * 120.16642 * 180.30507 * 16 15 14 18 18 C 1.34814 * 116.99699 * 5.38945 * 17 16 15 19 19 H 1.07995 * 120.00319 * 354.96117 * 18 17 16 20 20 C 1.38700 * 119.99815 * 174.96387 * 18 17 16 21 21 N 1.31520 * 120.00046 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00011 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.46884 * 359.97438 * 22 20 18 24 24 H 1.48506 * 109.47208 * 119.99586 * 22 20 18 25 25 H 1.48496 * 109.47222 * 239.99949 * 22 20 18 26 26 C 1.38876 * 120.00468 * 0.25840 * 7 6 5 27 27 C 1.38050 * 120.00191 * 0.02562 * 26 7 6 28 28 H 1.08998 * 109.47405 * 269.99818 * 1 2 3 29 29 H 1.09005 * 109.47175 * 29.99861 * 1 2 3 30 30 H 1.09003 * 109.47420 * 149.99781 * 1 2 3 31 31 H 1.08999 * 109.47128 * 185.36565 * 3 2 1 32 32 H 1.09007 * 109.47230 * 305.36242 * 3 2 1 33 33 H 1.09001 * 109.47230 * 65.36467 * 3 2 1 34 34 H 1.08007 * 120.00219 * 359.97438 * 5 4 2 35 35 H 1.07996 * 120.00566 * 179.72761 * 6 5 4 36 36 H 0.96997 * 120.00283 * 144.85857 * 8 7 6 37 37 H 1.08000 * 120.04571 * 359.97438 * 12 11 9 38 38 H 1.08000 * 119.83502 * 179.97438 * 13 12 11 39 39 H 1.08004 * 119.79912 * 179.97438 * 14 13 12 40 40 H 1.08005 * 119.96685 * 179.97438 * 15 14 13 41 41 H 0.97002 * 119.99828 * 180.02562 * 21 20 18 42 42 H 1.08005 * 119.99757 * 180.02562 * 26 7 6 43 43 H 1.08003 * 120.00525 * 179.97438 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1644 -1.2116 -0.0005 5 6 3.5481 -1.2147 0.1187 6 6 4.2388 -2.4101 0.1129 7 6 3.5490 -3.6100 -0.0007 8 7 4.2493 -4.8232 -0.0007 9 6 5.4640 -4.9001 -0.5797 10 8 5.9873 -3.8990 -1.0301 11 6 6.1587 -6.1984 -0.6667 12 6 5.5612 -7.3508 -0.1510 13 6 6.2157 -8.5608 -0.2350 14 6 7.4653 -8.6407 -0.8286 15 6 8.0684 -7.5101 -1.3417 16 6 7.4215 -6.2838 -1.2716 17 8 8.0093 -5.1737 -1.7802 18 6 9.1722 -5.3448 -2.4404 19 1 9.6353 -6.3198 -2.4747 20 6 9.7739 -4.2686 -3.0757 21 7 9.2097 -3.0813 -3.0343 22 14 11.3848 -4.5059 -3.9911 23 1 11.8078 -5.9257 -3.8888 24 1 11.2000 -4.1456 -5.4199 25 1 12.4276 -3.6349 -3.3918 26 6 2.1649 -3.6073 -0.1138 27 6 1.4746 -2.4118 -0.1139 28 1 -0.3634 0.0000 1.0276 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3634 -0.8900 -0.5139 31 1 3.2652 1.0717 -0.0961 32 1 1.8641 1.8808 -0.8381 33 1 2.0082 1.7975 0.9341 34 1 4.0843 -0.2817 0.2114 35 1 5.3152 -2.4124 0.2012 36 1 3.8600 -5.6079 0.4158 37 1 4.5880 -7.2936 0.3137 38 1 5.7527 -9.4510 0.1645 39 1 7.9707 -9.5932 -0.8895 40 1 9.0427 -7.5804 -1.8025 41 1 9.6303 -2.3287 -3.4789 42 1 1.6284 -4.5406 -0.2017 43 1 0.3982 -2.4096 -0.2024 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194325801.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:42 Heat of formation + Delta-G solvation = 21.403592 kcal Electronic energy + Delta-G solvation = -26613.460521 eV Core-core repulsion = 22818.439836 eV Total energy + Delta-G solvation = -3795.020685 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.12720 -39.21081 -38.10752 -36.40082 -35.97643 -33.58542 -32.35525 -30.98781 -30.71136 -28.96465 -28.48576 -28.16741 -25.44646 -24.65455 -23.02612 -22.34862 -21.58451 -20.63929 -19.69430 -18.17191 -17.81702 -17.31440 -16.32308 -16.23152 -15.49560 -15.10632 -14.70581 -14.54499 -14.37094 -14.29771 -14.15306 -13.79284 -13.59527 -13.47529 -13.02724 -12.91691 -12.64966 -12.54697 -12.38083 -12.14974 -11.96932 -11.95486 -11.73096 -11.36314 -11.12977 -10.93527 -10.80953 -10.77445 -10.45437 -10.13025 -9.56757 -8.90285 -8.88173 -8.76627 -8.55786 -8.30917 -7.34139 -6.82107 -6.46035 -4.05696 1.57990 1.70921 1.91305 2.30272 3.11145 3.12087 3.16393 3.17773 3.65149 3.69872 3.92282 4.18728 4.62938 4.89014 4.92027 5.04622 5.15203 5.15817 5.23368 5.29294 5.40819 5.48667 5.49557 5.53853 5.57257 5.69471 5.73193 5.79918 5.85572 6.03273 6.09588 6.30242 6.35614 6.46807 6.54397 6.64748 6.79620 6.90916 6.92873 7.04444 7.22079 7.26890 7.30185 7.34101 7.65497 7.67338 7.90323 8.07234 8.93466 9.02821 9.65222 10.67615 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.012244 B = 0.003363 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2286.307142 B = 8323.298773 C =10447.564782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.644 5.644 3 C 0.092 3.908 4 C 0.188 3.812 5 C -0.177 4.177 6 C -0.070 4.070 7 C 0.108 3.892 8 N -0.683 5.683 9 C 0.552 3.448 10 O -0.485 6.485 11 C -0.228 4.228 12 C -0.038 4.038 13 C -0.230 4.230 14 C -0.050 4.050 15 C -0.237 4.237 16 C 0.190 3.810 17 O -0.123 6.123 18 C -0.403 4.403 19 H 0.095 0.905 20 C 0.045 3.955 21 N -0.831 5.831 22 Si 0.941 3.059 23 H -0.265 1.265 24 H -0.275 1.275 25 H -0.275 1.275 26 C -0.106 4.106 27 C -0.181 4.181 28 H 0.043 0.957 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.079 0.921 32 H 0.051 0.949 33 H 0.047 0.953 34 H 0.124 0.876 35 H 0.143 0.857 36 H 0.400 0.600 37 H 0.112 0.888 38 H 0.110 0.890 39 H 0.111 0.889 40 H 0.132 0.868 41 H 0.271 0.729 42 H 0.121 0.879 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.208 0.476 6.796 15.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.359 5.359 3 C -0.051 4.051 4 C 0.089 3.911 5 C -0.199 4.199 6 C -0.091 4.091 7 C 0.012 3.988 8 N -0.331 5.331 9 C 0.343 3.657 10 O -0.358 6.358 11 C -0.233 4.233 12 C -0.056 4.056 13 C -0.249 4.249 14 C -0.068 4.068 15 C -0.256 4.256 16 C 0.130 3.870 17 O -0.021 6.021 18 C -0.479 4.479 19 H 0.112 0.888 20 C -0.163 4.163 21 N -0.462 5.462 22 Si 0.765 3.235 23 H -0.190 1.190 24 H -0.200 1.200 25 H -0.200 1.200 26 C -0.128 4.128 27 C -0.204 4.204 28 H 0.061 0.939 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.098 0.902 32 H 0.070 0.930 33 H 0.065 0.935 34 H 0.141 0.859 35 H 0.161 0.839 36 H 0.236 0.764 37 H 0.130 0.870 38 H 0.128 0.872 39 H 0.129 0.871 40 H 0.150 0.850 41 H 0.081 0.919 42 H 0.139 0.861 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -13.845 1.864 6.323 15.334 hybrid contribution 0.536 -0.640 -0.302 0.888 sum -13.309 1.224 6.021 14.658 Atomic orbital electron populations 1.21527 0.80079 1.02260 1.00693 1.46203 1.04550 1.03089 1.82044 1.21640 0.98053 0.85008 1.00412 1.17796 0.91200 0.85528 0.96620 1.20645 0.91877 0.98434 1.08938 1.21216 1.01344 0.90335 0.96189 1.17579 0.90626 0.86209 1.04349 1.43461 1.19625 1.10834 1.59139 1.18347 0.80150 0.89486 0.77718 1.90933 1.64073 1.36191 1.44651 1.18742 0.96258 0.93109 1.15177 1.20767 0.97486 0.91790 0.95598 1.20463 0.97666 0.97025 1.09776 1.20908 0.94383 0.97158 0.94377 1.21162 1.02781 0.92435 1.09245 1.19252 0.90006 0.87101 0.90623 1.84166 1.34022 1.26309 1.57584 1.21548 0.97289 0.97564 1.31501 0.88784 1.25389 0.99587 0.94431 0.96906 1.70136 1.37730 0.99770 1.38535 0.85662 0.79914 0.78929 0.78993 1.18962 1.19996 1.20002 1.20610 0.92460 0.97778 1.01913 1.20339 0.99176 0.90632 1.10262 0.93870 0.92035 0.91480 0.90245 0.92997 0.93460 0.85857 0.83929 0.76423 0.86995 0.87196 0.87132 0.85014 0.91885 0.86126 0.86137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.84 10.35 59.84 0.62 1.46 16 2 N -0.64 -7.52 3.41 -187.49 -0.64 -8.16 16 3 C 0.09 0.90 10.59 59.84 0.63 1.53 16 4 C 0.19 2.68 6.54 -83.69 -0.55 2.13 16 5 C -0.18 -2.81 9.26 -39.41 -0.36 -3.17 16 6 C -0.07 -1.30 8.69 -39.41 -0.34 -1.64 16 7 C 0.11 1.85 6.30 -83.62 -0.53 1.32 16 8 N -0.68 -11.75 5.29 -10.76 -0.06 -11.81 16 9 C 0.55 12.24 7.61 -12.48 -0.09 12.14 16 10 O -0.49 -13.12 12.61 -16.59 -0.21 -13.33 16 11 C -0.23 -4.93 5.89 -104.82 -0.62 -5.54 16 12 C -0.04 -0.64 9.53 -39.20 -0.37 -1.01 16 13 C -0.23 -3.73 10.02 -39.61 -0.40 -4.12 16 14 C -0.05 -0.87 10.03 -39.54 -0.40 -1.26 16 15 C -0.24 -5.05 9.16 -39.44 -0.36 -5.41 16 16 C 0.19 4.69 6.66 -38.60 -0.26 4.43 16 17 O -0.12 -3.60 7.84 -21.07 -0.17 -3.76 16 18 C -0.40 -11.34 9.49 30.90 0.29 -11.04 16 19 H 0.09 2.40 5.20 -52.49 -0.27 2.13 16 20 C 0.04 1.24 5.49 -17.51 -0.10 1.15 16 21 N -0.83 -24.89 13.67 55.48 0.76 -24.13 16 22 Si 0.94 20.45 29.55 -169.99 -5.02 15.43 16 23 H -0.27 -5.48 7.11 56.52 0.40 -5.07 16 24 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 25 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 26 C -0.11 -1.50 9.96 -39.41 -0.39 -1.89 16 27 C -0.18 -2.41 9.25 -39.41 -0.36 -2.78 16 28 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.43 8.07 -51.93 -0.42 0.01 16 30 H 0.07 0.55 6.00 -51.93 -0.31 0.23 16 31 H 0.08 0.82 5.39 -51.93 -0.28 0.54 16 32 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.12 1.77 5.83 -52.48 -0.31 1.47 16 35 H 0.14 3.04 6.22 -52.49 -0.33 2.72 16 36 H 0.40 5.36 6.86 -40.82 -0.28 5.08 16 37 H 0.11 1.45 6.41 -52.49 -0.34 1.11 16 38 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 39 H 0.11 1.57 8.06 -52.48 -0.42 1.15 16 40 H 0.13 2.77 5.64 -52.48 -0.30 2.48 16 41 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 42 H 0.12 1.38 8.06 -52.48 -0.42 0.96 16 43 H 0.12 1.29 6.03 -52.48 -0.32 0.97 16 LS Contribution 357.09 15.07 5.38 5.38 Total: -1.00 -34.89 357.09 -8.36 -43.24 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: -4.82 Total: 10.84 kcal Atomic # 6 Polarization: -10.13 SS G_CDS: -3.59 Total: -13.72 kcal Atomic # 7 Polarization: -44.15 SS G_CDS: 0.06 Total: -44.09 kcal Atomic # 8 Polarization: -16.71 SS G_CDS: -0.37 Total: -17.09 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -34.89 -8.36 -43.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194325801.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.648 kcal (2) G-P(sol) polarization free energy of solvation -34.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.244 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds