Wall clock time and date at job start Tue Mar 31 2020 14:14:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46496 * 120.00232 * 2 1 4 4 C 1.39902 * 119.99799 * 180.02562 * 2 1 3 5 5 C 1.38886 * 120.00202 * 185.68889 * 4 2 1 6 6 C 1.38061 * 120.00029 * 180.25279 * 5 4 2 7 7 C 1.38870 * 119.99847 * 359.45103 * 6 5 4 8 8 N 1.40076 * 119.99907 * 180.27649 * 7 6 5 9 9 C 1.34781 * 119.99981 * 324.84859 * 8 7 6 10 10 O 1.21616 * 119.99659 * 4.45588 * 9 8 7 11 11 C 1.47507 * 120.00093 * 184.44892 * 9 8 7 12 12 C 1.39671 * 120.19495 * 0.02562 * 11 9 8 13 13 C 1.37831 * 119.91351 * 180.02562 * 12 11 9 14 14 C 1.38570 * 120.32473 * 0.02562 * 13 12 11 15 15 C 1.38025 * 120.40513 * 0.02562 * 14 13 12 16 16 C 1.38828 * 120.07363 * 359.67491 * 15 14 13 17 17 O 1.35523 * 120.16642 * 180.30507 * 16 15 14 18 18 C 1.34814 * 116.99699 * 5.38945 * 17 16 15 19 19 H 1.07995 * 120.00319 * 354.96117 * 18 17 16 20 20 C 1.38700 * 119.99815 * 174.96387 * 18 17 16 21 21 N 1.31520 * 120.00046 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00011 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.46884 * 359.97438 * 22 20 18 24 24 H 1.48506 * 109.47208 * 119.99586 * 22 20 18 25 25 H 1.48496 * 109.47222 * 239.99949 * 22 20 18 26 26 C 1.38876 * 120.00468 * 0.25840 * 7 6 5 27 27 C 1.38050 * 120.00191 * 0.02562 * 26 7 6 28 28 H 1.08998 * 109.47405 * 269.99818 * 1 2 3 29 29 H 1.09005 * 109.47175 * 29.99861 * 1 2 3 30 30 H 1.09003 * 109.47420 * 149.99781 * 1 2 3 31 31 H 1.08999 * 109.47128 * 185.36565 * 3 2 1 32 32 H 1.09007 * 109.47230 * 305.36242 * 3 2 1 33 33 H 1.09001 * 109.47230 * 65.36467 * 3 2 1 34 34 H 1.08007 * 120.00219 * 359.97438 * 5 4 2 35 35 H 1.07996 * 120.00566 * 179.72761 * 6 5 4 36 36 H 0.96997 * 120.00283 * 144.85857 * 8 7 6 37 37 H 1.08000 * 120.04571 * 359.97438 * 12 11 9 38 38 H 1.08000 * 119.83502 * 179.97438 * 13 12 11 39 39 H 1.08004 * 119.79912 * 179.97438 * 14 13 12 40 40 H 1.08005 * 119.96685 * 179.97438 * 15 14 13 41 41 H 0.97002 * 119.99828 * 180.02562 * 21 20 18 42 42 H 1.08005 * 119.99757 * 180.02562 * 26 7 6 43 43 H 1.08003 * 120.00525 * 179.97438 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1644 -1.2116 -0.0005 5 6 3.5481 -1.2147 0.1187 6 6 4.2388 -2.4101 0.1129 7 6 3.5490 -3.6100 -0.0007 8 7 4.2493 -4.8232 -0.0007 9 6 5.4640 -4.9001 -0.5797 10 8 5.9873 -3.8990 -1.0301 11 6 6.1587 -6.1984 -0.6667 12 6 5.5612 -7.3508 -0.1510 13 6 6.2157 -8.5608 -0.2350 14 6 7.4653 -8.6407 -0.8286 15 6 8.0684 -7.5101 -1.3417 16 6 7.4215 -6.2838 -1.2716 17 8 8.0093 -5.1737 -1.7802 18 6 9.1722 -5.3448 -2.4404 19 1 9.6353 -6.3198 -2.4747 20 6 9.7739 -4.2686 -3.0757 21 7 9.2097 -3.0813 -3.0343 22 14 11.3848 -4.5059 -3.9911 23 1 11.8078 -5.9257 -3.8888 24 1 11.2000 -4.1456 -5.4199 25 1 12.4276 -3.6349 -3.3918 26 6 2.1649 -3.6073 -0.1138 27 6 1.4746 -2.4118 -0.1139 28 1 -0.3634 0.0000 1.0276 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3634 -0.8900 -0.5139 31 1 3.2652 1.0717 -0.0961 32 1 1.8641 1.8808 -0.8381 33 1 2.0082 1.7975 0.9341 34 1 4.0843 -0.2817 0.2114 35 1 5.3152 -2.4124 0.2012 36 1 3.8600 -5.6079 0.4158 37 1 4.5880 -7.2936 0.3137 38 1 5.7527 -9.4510 0.1645 39 1 7.9707 -9.5932 -0.8895 40 1 9.0427 -7.5804 -1.8025 41 1 9.6303 -2.3287 -3.4789 42 1 1.6284 -4.5406 -0.2017 43 1 0.3982 -2.4096 -0.2024 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194325801.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:41 Heat of formation + Delta-G solvation = -1.595201 kcal Electronic energy + Delta-G solvation = -26614.457824 eV Core-core repulsion = 22818.439836 eV Total energy + Delta-G solvation = -3796.017988 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.62976 -40.65004 -39.60818 -38.05350 -37.22430 -35.02888 -34.32491 -32.24752 -32.10684 -30.58058 -29.72132 -28.98557 -27.39572 -25.83737 -24.44335 -23.57821 -23.15764 -21.92385 -21.17527 -19.88686 -19.44033 -18.59984 -17.88936 -17.58664 -16.63827 -16.41217 -16.13009 -16.04706 -15.87295 -15.81504 -15.53280 -15.27626 -15.16004 -14.64098 -14.51151 -14.32087 -14.25184 -13.59418 -13.55839 -13.42453 -13.25283 -13.02433 -12.89669 -12.82978 -12.65119 -12.55444 -12.33570 -12.10235 -11.94779 -11.44644 -11.33822 -10.84953 -10.55785 -10.01357 -9.85069 -9.81084 -9.04967 -8.45094 -7.93513 -6.15950 0.05455 0.49682 0.62780 0.73087 1.31666 1.42400 1.51558 2.06669 2.14957 2.20289 2.33326 2.85284 2.97689 3.22871 3.45679 3.83694 3.98509 4.00694 4.07484 4.24828 4.28404 4.45368 4.46758 4.52190 4.54311 4.56735 4.63751 4.70396 4.81920 4.89346 4.92782 4.97181 5.07084 5.09421 5.12494 5.23061 5.30580 5.46688 5.54282 5.62668 5.66376 5.69734 5.95621 6.01432 6.16885 6.39343 6.57013 6.67370 6.94211 7.44976 7.79616 8.75408 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.012244 B = 0.003363 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2286.307142 B = 8323.298773 C =10447.564782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.647 5.647 3 C 0.085 3.915 4 C 0.193 3.807 5 C -0.195 4.195 6 C -0.098 4.098 7 C 0.074 3.926 8 N -0.658 5.658 9 C 0.544 3.456 10 O -0.549 6.549 11 C -0.244 4.244 12 C -0.029 4.029 13 C -0.199 4.199 14 C -0.038 4.038 15 C -0.258 4.258 16 C 0.150 3.850 17 O -0.188 6.188 18 C -0.426 4.426 19 H 0.107 0.893 20 C -0.022 4.022 21 N -0.904 5.904 22 Si 1.022 2.978 23 H -0.245 1.245 24 H -0.269 1.269 25 H -0.269 1.269 26 C -0.089 4.089 27 C -0.177 4.177 28 H 0.055 0.945 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.124 0.876 35 H 0.095 0.905 36 H 0.420 0.580 37 H 0.162 0.838 38 H 0.166 0.834 39 H 0.155 0.845 40 H 0.123 0.877 41 H 0.270 0.730 42 H 0.159 0.841 43 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.875 -2.950 7.976 19.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.360 5.360 3 C -0.057 4.057 4 C 0.091 3.909 5 C -0.218 4.218 6 C -0.119 4.119 7 C -0.021 4.021 8 N -0.306 5.306 9 C 0.335 3.665 10 O -0.426 6.426 11 C -0.249 4.249 12 C -0.048 4.048 13 C -0.218 4.218 14 C -0.057 4.057 15 C -0.277 4.277 16 C 0.095 3.905 17 O -0.091 6.091 18 C -0.502 4.502 19 H 0.125 0.875 20 C -0.222 4.222 21 N -0.540 5.540 22 Si 0.840 3.160 23 H -0.168 1.168 24 H -0.194 1.194 25 H -0.194 1.194 26 C -0.109 4.109 27 C -0.200 4.200 28 H 0.074 0.926 29 H 0.099 0.901 30 H 0.094 0.906 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.142 0.858 35 H 0.114 0.886 36 H 0.260 0.740 37 H 0.180 0.820 38 H 0.184 0.816 39 H 0.172 0.828 40 H 0.141 0.859 41 H 0.079 0.921 42 H 0.176 0.824 43 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -17.609 -1.626 7.567 19.235 hybrid contribution 1.261 0.220 -0.410 1.344 sum -16.348 -1.406 7.157 17.901 Atomic orbital electron populations 1.21781 0.77767 1.03689 1.01911 1.46526 1.06059 1.02564 1.80827 1.21777 0.97236 0.84716 1.02020 1.17949 0.90488 0.87340 0.95099 1.20664 0.93317 0.97603 1.10226 1.20993 0.99430 0.92654 0.98830 1.17780 0.92038 0.85313 1.06960 1.43093 1.17960 1.11839 1.57739 1.18684 0.81307 0.89111 0.77374 1.90928 1.65928 1.38224 1.47566 1.19192 0.95715 0.94660 1.15296 1.21334 0.99174 0.90251 0.94012 1.21188 0.96269 0.98309 1.05995 1.21453 0.94864 0.97286 0.92054 1.21300 1.02959 0.92765 1.10663 1.20075 0.91587 0.87743 0.91124 1.84179 1.35322 1.28698 1.60875 1.22075 0.97818 0.98376 1.31955 0.87530 1.26758 1.03828 0.93770 0.97804 1.70336 1.40651 1.01126 1.41886 0.84506 0.74435 0.79825 0.77197 1.16774 1.19435 1.19389 1.20949 0.90701 0.99806 0.99465 1.20778 1.00908 0.89677 1.08615 0.92627 0.90143 0.90604 0.91784 0.91363 0.91714 0.85801 0.88646 0.74027 0.82048 0.81649 0.82764 0.85884 0.92097 0.82387 0.82430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.23 10.35 127.77 1.32 2.55 16 2 N -0.65 -13.83 3.41 -747.10 -2.55 -16.38 16 3 C 0.09 1.58 10.59 127.77 1.35 2.94 16 4 C 0.19 5.32 6.54 38.16 0.25 5.57 16 5 C -0.20 -6.65 9.26 22.38 0.21 -6.45 16 6 C -0.10 -3.98 8.69 22.38 0.19 -3.79 16 7 C 0.07 2.59 6.30 38.13 0.24 2.83 16 8 N -0.66 -22.76 5.29 -306.20 -1.62 -24.38 16 9 C 0.54 25.59 7.61 86.69 0.66 26.25 16 10 O -0.55 -33.03 12.61 16.82 0.21 -32.82 16 11 C -0.24 -10.73 5.89 -19.99 -0.12 -10.85 16 12 C -0.03 -0.88 9.53 22.52 0.21 -0.67 16 13 C -0.20 -5.27 10.02 22.25 0.22 -5.04 16 14 C -0.04 -1.19 10.03 22.30 0.22 -0.97 16 15 C -0.26 -11.06 9.16 22.36 0.20 -10.86 16 16 C 0.15 7.81 6.66 22.91 0.15 7.96 16 17 O -0.19 -12.11 7.84 0.81 0.01 -12.10 16 18 C -0.43 -26.03 9.49 67.93 0.64 -25.39 16 19 H 0.11 5.84 5.20 -2.91 -0.02 5.82 16 20 C -0.02 -1.34 5.49 84.85 0.47 -0.88 16 21 N -0.90 -59.82 13.67 21.62 0.30 -59.52 16 22 Si 1.02 44.76 29.55 68.60 2.03 46.79 16 23 H -0.24 -9.67 7.11 99.48 0.71 -8.96 16 24 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 25 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 26 C -0.09 -2.29 9.96 22.38 0.22 -2.06 16 27 C -0.18 -4.21 9.25 22.38 0.21 -4.00 16 28 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.08 0.82 8.07 -2.38 -0.02 0.80 16 30 H 0.08 0.90 6.00 -2.39 -0.01 0.89 16 31 H 0.06 1.39 5.39 -2.39 -0.01 1.38 16 32 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 33 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.12 3.99 5.83 -2.91 -0.02 3.98 16 35 H 0.10 4.74 6.22 -2.91 -0.02 4.72 16 36 H 0.42 10.23 6.86 -92.71 -0.64 9.59 16 37 H 0.16 3.21 6.41 -2.91 -0.02 3.19 16 38 H 0.17 2.78 8.06 -2.91 -0.02 2.76 16 39 H 0.15 3.48 8.06 -2.91 -0.02 3.46 16 40 H 0.12 5.37 5.64 -2.91 -0.02 5.35 16 41 H 0.27 16.34 8.31 -92.71 -0.77 15.57 16 42 H 0.16 2.84 8.06 -2.91 -0.02 2.82 16 43 H 0.16 2.58 6.03 -2.91 -0.02 2.56 16 Total: -1.00 -91.44 357.09 5.48 -85.96 By element: Atomic # 1 Polarization: 34.86 SS G_CDS: 0.44 Total: 35.30 kcal Atomic # 6 Polarization: -29.52 SS G_CDS: 6.67 Total: -22.85 kcal Atomic # 7 Polarization: -96.41 SS G_CDS: -3.87 Total: -100.28 kcal Atomic # 8 Polarization: -45.13 SS G_CDS: 0.22 Total: -44.92 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -91.44 5.48 -85.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194325801.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.367 kcal (2) G-P(sol) polarization free energy of solvation -91.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds