Wall clock time and date at job start Tue Mar 31 2020 14:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99784 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99763 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99944 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99937 * 3 2 1 7 7 C 1.37881 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99801 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99661 * 359.97438 * 7 2 1 10 10 N 1.46498 * 109.46983 * 180.02562 * 9 7 2 11 11 C 1.34969 * 125.97666 * 125.00290 * 10 9 7 12 12 C 1.35241 * 107.86090 * 179.97438 * 11 10 9 13 13 C 1.40411 * 107.86657 * 359.97438 * 12 11 10 14 14 N 1.40161 * 125.97348 * 180.02562 * 13 12 11 15 15 C 1.34780 * 119.99667 * 0.02562 * 14 13 12 16 16 O 1.21287 * 120.00174 * 359.97438 * 15 14 13 17 17 C 1.50704 * 119.99539 * 180.02562 * 15 14 13 18 18 H 1.09004 * 109.24923 * 300.51941 * 17 15 14 19 19 C 1.52727 * 109.25155 * 181.08961 * 17 15 14 20 20 C 1.53319 * 108.44007 * 188.42112 * 19 17 15 21 21 C 1.52769 * 108.36233 * 69.83535 * 20 19 17 22 22 C 1.50492 * 110.55660 * 309.14043 * 21 20 19 23 23 C 1.39190 * 117.97528 * 197.27407 * 22 21 20 24 24 C 1.38405 * 118.86576 * 180.56406 * 23 22 21 25 25 C 1.38233 * 118.84765 * 359.97438 * 24 23 22 26 26 N 1.31517 * 120.61153 * 359.85679 * 25 24 23 27 27 C 1.32706 * 122.39570 * 0.05060 * 26 25 24 28 28 N 1.31220 * 108.05649 * 359.72017 * 13 12 11 29 29 H 0.97001 * 119.99697 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47575 * 299.99992 * 9 7 2 31 31 H 1.09000 * 109.47392 * 60.00390 * 9 7 2 32 32 H 1.07992 * 126.07328 * 0.02562 * 11 10 9 33 33 H 1.07999 * 126.06841 * 179.97438 * 12 11 10 34 34 H 0.96999 * 120.00430 * 180.02562 * 14 13 12 35 35 H 1.08998 * 109.63909 * 308.10447 * 19 17 15 36 36 H 1.08994 * 109.64413 * 68.73862 * 19 17 15 37 37 H 1.09001 * 109.68692 * 310.12070 * 20 19 17 38 38 H 1.09000 * 109.72031 * 189.57487 * 20 19 17 39 39 H 1.09003 * 109.26022 * 188.86736 * 21 20 19 40 40 H 1.08995 * 109.26298 * 69.41868 * 21 20 19 41 41 H 1.08001 * 120.56253 * 0.54329 * 23 22 21 42 42 H 1.08006 * 120.57608 * 179.97438 * 24 23 22 43 43 H 1.07994 * 119.70022 * 179.87923 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 3.5467 1.4403 0.7001 6 1 1.4466 2.6527 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 7 2.2031 -3.6126 0.0027 11 6 2.2421 -4.6216 0.8983 12 6 3.2604 -5.4424 0.5542 13 6 3.8680 -4.9160 -0.5969 14 7 4.9631 -5.4680 -1.2756 15 6 5.5270 -6.6082 -0.8300 16 8 5.0872 -7.1562 0.1586 17 6 6.7048 -7.2014 -1.5594 18 1 6.4166 -7.4229 -2.5871 19 6 7.1273 -8.4947 -0.8657 20 6 8.4463 -8.9695 -1.4866 21 6 9.5518 -8.0025 -1.0659 22 6 9.1445 -6.5808 -1.3446 23 6 10.1412 -5.6096 -1.3721 24 6 9.7858 -4.2942 -1.6151 25 6 8.4532 -3.9908 -1.8226 26 7 7.5388 -4.9355 -1.7926 27 6 7.8384 -6.2081 -1.5649 28 7 3.2273 -3.8203 -0.9301 29 1 -0.4850 -0.8401 -0.0004 30 1 0.6248 -2.5563 0.8920 31 1 0.6242 -2.5575 -0.8880 32 1 1.5777 -4.7510 1.7397 33 1 3.5541 -6.3431 1.0729 34 1 5.3151 -5.0295 -2.0660 35 1 7.2692 -8.3099 0.1991 36 1 6.3600 -9.2553 -1.0097 37 1 8.3590 -8.9770 -2.5731 38 1 8.6806 -9.9725 -1.1301 39 1 10.4608 -8.2317 -1.6221 40 1 9.7445 -8.1188 0.0005 41 1 11.1741 -5.8779 -1.2063 42 1 10.5366 -3.5183 -1.6421 43 1 8.1603 -2.9687 -2.0114 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194388818.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:59:04 Heat of formation + Delta-G solvation = 71.957000 kcal Electronic energy + Delta-G solvation = -26911.586374 eV Core-core repulsion = 23151.050600 eV Total energy + Delta-G solvation = -3760.535774 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.31567 -40.44565 -39.08440 -36.70063 -34.68443 -33.87270 -33.36626 -30.97529 -30.69255 -30.10855 -29.27003 -26.34078 -25.03092 -23.67695 -23.55978 -22.80260 -21.45175 -20.40004 -19.93410 -19.45500 -17.28388 -17.12859 -16.89667 -16.69266 -16.38108 -15.88865 -15.10745 -14.95929 -14.55039 -14.20414 -14.17694 -13.89582 -13.78873 -13.67855 -13.23065 -13.13786 -12.93437 -12.70892 -12.31216 -12.26946 -12.08636 -11.76513 -11.49508 -11.23401 -11.09494 -10.90936 -10.76944 -10.31744 -10.15794 -10.07576 -9.90971 -9.67431 -9.53867 -8.99044 -8.93676 -8.54442 -8.08135 -7.40522 -6.54648 -4.28074 0.80183 0.98150 2.36309 2.85139 2.97134 3.39304 3.42191 3.48266 3.59156 3.73494 3.86456 3.96185 4.18838 4.42266 4.43617 4.46779 4.58589 4.67244 4.79287 4.92163 5.00928 5.06593 5.13114 5.19236 5.30622 5.42630 5.45160 5.53404 5.54394 5.64766 5.78886 5.84899 5.89906 5.97960 6.03580 6.34956 6.40946 6.50404 6.61413 6.69898 6.80882 7.50087 7.59976 7.71170 7.80672 7.91229 8.39169 8.40368 8.62134 8.71540 9.40056 10.82916 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.015988 B = 0.003092 C = 0.002654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.852930 B = 9053.137805 C =10547.014568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.022 3.978 3 Si 1.080 2.920 4 H -0.285 1.285 5 H -0.287 1.287 6 H -0.282 1.282 7 C -0.605 4.605 8 H 0.064 0.936 9 C 0.250 3.750 10 N -0.320 5.320 11 C 0.048 3.952 12 C -0.287 4.287 13 C 0.262 3.738 14 N -0.612 5.612 15 C 0.533 3.467 16 O -0.523 6.523 17 C -0.050 4.050 18 H 0.116 0.884 19 C -0.101 4.101 20 C -0.121 4.121 21 C -0.079 4.079 22 C -0.118 4.118 23 C -0.077 4.077 24 C -0.171 4.171 25 C 0.112 3.888 26 N -0.485 5.485 27 C 0.134 3.866 28 N -0.301 5.301 29 H 0.267 0.733 30 H 0.045 0.955 31 H 0.034 0.966 32 H 0.166 0.834 33 H 0.160 0.840 34 H 0.420 0.580 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.068 0.932 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.135 0.865 42 H 0.137 0.863 43 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.093 -16.801 -4.061 27.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.182 4.182 3 Si 0.907 3.093 4 H -0.211 1.211 5 H -0.213 1.213 6 H -0.208 1.208 7 C -0.644 4.644 8 H 0.082 0.918 9 C 0.132 3.868 10 N -0.101 5.101 11 C -0.102 4.102 12 C -0.319 4.319 13 C 0.008 3.992 14 N -0.260 5.260 15 C 0.317 3.683 16 O -0.398 6.398 17 C -0.072 4.072 18 H 0.134 0.866 19 C -0.139 4.139 20 C -0.158 4.158 21 C -0.116 4.116 22 C -0.120 4.120 23 C -0.103 4.103 24 C -0.190 4.190 25 C -0.047 4.047 26 N -0.193 5.193 27 C -0.002 4.002 28 N -0.132 5.132 29 H 0.077 0.923 30 H 0.063 0.937 31 H 0.051 0.949 32 H 0.183 0.817 33 H 0.177 0.823 34 H 0.258 0.742 35 H 0.099 0.901 36 H 0.101 0.899 37 H 0.087 0.913 38 H 0.095 0.905 39 H 0.096 0.904 40 H 0.099 0.901 41 H 0.152 0.848 42 H 0.155 0.845 43 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 19.548 -14.257 -4.333 24.579 hybrid contribution 1.300 -1.991 0.297 2.397 sum 20.848 -16.248 -4.036 26.738 Atomic orbital electron populations 1.70820 1.06777 1.30441 1.46212 1.25921 0.96327 1.02791 0.93208 0.83381 0.74578 0.74327 0.77024 1.21127 1.21347 1.20787 1.22140 0.95427 0.90433 1.56372 0.91810 1.19731 0.86351 0.82885 0.97881 1.48776 1.23634 1.19396 1.18317 1.22534 1.00526 0.90253 0.96837 1.21540 1.02019 1.06398 1.01896 1.19195 0.91361 0.94117 0.94496 1.42584 1.28608 1.24342 1.30514 1.20104 0.83497 0.80021 0.84649 1.90626 1.62794 1.60834 1.25503 1.20175 0.90637 0.94249 1.02159 0.86596 1.21438 0.97373 0.94237 1.00831 1.21604 0.94208 0.98853 1.01142 1.20465 0.98995 0.89910 1.02241 1.20380 0.93265 0.97209 1.01179 1.21590 0.99548 0.92663 0.96515 1.22158 0.98108 0.97255 1.01513 1.22726 0.88907 0.98706 0.94396 1.67354 1.38494 1.00613 1.12883 1.20535 0.92097 0.91057 0.96483 1.77371 1.03623 1.16437 1.15771 0.92255 0.93727 0.94857 0.81669 0.82273 0.74158 0.90060 0.89864 0.91292 0.90450 0.90395 0.90074 0.84758 0.84538 0.82214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.84 13.65 55.43 0.76 -26.09 16 2 C 0.02 0.62 5.46 -17.82 -0.10 0.53 16 3 Si 1.08 25.42 29.90 -169.99 -5.08 20.34 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.61 -17.46 9.24 -34.44 -0.32 -17.78 16 8 H 0.06 1.93 7.81 -52.49 -0.41 1.52 16 9 C 0.25 6.52 5.57 -5.20 -0.03 6.50 16 10 N -0.32 -7.81 3.66 -62.57 -0.23 -8.04 16 11 C 0.05 1.02 11.44 -17.24 -0.20 0.82 16 12 C -0.29 -6.05 9.61 -39.83 -0.38 -6.43 16 13 C 0.26 5.67 8.11 -154.38 -1.25 4.42 16 14 N -0.61 -10.77 4.84 -11.13 -0.05 -10.82 16 15 C 0.53 8.37 7.01 -10.98 -0.08 8.30 16 16 O -0.52 -9.48 12.95 5.55 0.07 -9.41 16 17 C -0.05 -0.56 2.70 -93.05 -0.25 -0.81 16 18 H 0.12 1.06 8.14 -51.93 -0.42 0.64 16 19 C -0.10 -0.91 4.66 -26.71 -0.12 -1.03 16 20 C -0.12 -0.75 5.98 -26.68 -0.16 -0.91 16 21 C -0.08 -0.51 5.68 -28.10 -0.16 -0.66 16 22 C -0.12 -1.08 5.74 -104.60 -0.60 -1.68 16 23 C -0.08 -0.62 9.75 -39.17 -0.38 -1.00 16 24 C -0.17 -1.45 10.12 -39.52 -0.40 -1.85 16 25 C 0.11 1.22 11.19 -17.69 -0.20 1.02 16 26 N -0.48 -6.26 7.62 -9.51 -0.07 -6.33 16 27 C 0.13 1.53 6.20 -82.44 -0.51 1.02 16 28 N -0.30 -7.37 12.43 31.44 0.39 -6.98 16 29 H 0.27 7.74 7.22 -40.82 -0.29 7.45 16 30 H 0.05 1.12 7.94 -51.93 -0.41 0.71 16 31 H 0.03 0.90 8.01 -51.93 -0.42 0.49 16 32 H 0.17 2.85 8.06 -52.49 -0.42 2.43 16 33 H 0.16 3.23 5.92 -52.49 -0.31 2.92 16 34 H 0.42 6.81 7.25 -40.82 -0.30 6.52 16 35 H 0.08 0.86 7.77 -51.93 -0.40 0.46 16 36 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.07 0.39 8.10 -51.93 -0.42 -0.03 16 38 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 39 H 0.08 0.37 8.13 -51.93 -0.42 -0.06 16 40 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 42 H 0.14 0.81 8.06 -52.48 -0.42 0.38 16 43 H 0.16 1.52 8.06 -52.49 -0.42 1.10 16 LS Contribution 357.77 15.07 5.39 5.39 Total: -1.00 -35.19 357.77 -9.53 -44.72 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -5.56 Total: 6.79 kcal Atomic # 6 Polarization: -4.43 SS G_CDS: -5.14 Total: -9.57 kcal Atomic # 7 Polarization: -59.05 SS G_CDS: 0.79 Total: -58.26 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: 0.07 Total: -9.41 kcal Atomic # 14 Polarization: 25.42 SS G_CDS: -5.08 Total: 20.34 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -35.19 -9.53 -44.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194388818.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.678 kcal (2) G-P(sol) polarization free energy of solvation -35.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds