Wall clock time and date at job start Tue Mar 31 2020 14:59:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99784 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99763 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99944 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99937 * 3 2 1 7 7 C 1.37881 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99801 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99661 * 359.97438 * 7 2 1 10 10 N 1.46498 * 109.46983 * 180.02562 * 9 7 2 11 11 C 1.34969 * 125.97666 * 125.00290 * 10 9 7 12 12 C 1.35241 * 107.86090 * 179.97438 * 11 10 9 13 13 C 1.40411 * 107.86657 * 359.97438 * 12 11 10 14 14 N 1.40161 * 125.97348 * 180.02562 * 13 12 11 15 15 C 1.34780 * 119.99667 * 0.02562 * 14 13 12 16 16 O 1.21287 * 120.00174 * 359.97438 * 15 14 13 17 17 C 1.50704 * 119.99539 * 180.02562 * 15 14 13 18 18 H 1.09004 * 109.24923 * 300.51941 * 17 15 14 19 19 C 1.52727 * 109.25155 * 181.08961 * 17 15 14 20 20 C 1.53319 * 108.44007 * 188.42112 * 19 17 15 21 21 C 1.52769 * 108.36233 * 69.83535 * 20 19 17 22 22 C 1.50492 * 110.55660 * 309.14043 * 21 20 19 23 23 C 1.39190 * 117.97528 * 197.27407 * 22 21 20 24 24 C 1.38405 * 118.86576 * 180.56406 * 23 22 21 25 25 C 1.38233 * 118.84765 * 359.97438 * 24 23 22 26 26 N 1.31517 * 120.61153 * 359.85679 * 25 24 23 27 27 C 1.32706 * 122.39570 * 0.05060 * 26 25 24 28 28 N 1.31220 * 108.05649 * 359.72017 * 13 12 11 29 29 H 0.97001 * 119.99697 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47575 * 299.99992 * 9 7 2 31 31 H 1.09000 * 109.47392 * 60.00390 * 9 7 2 32 32 H 1.07992 * 126.07328 * 0.02562 * 11 10 9 33 33 H 1.07999 * 126.06841 * 179.97438 * 12 11 10 34 34 H 0.96999 * 120.00430 * 180.02562 * 14 13 12 35 35 H 1.08998 * 109.63909 * 308.10447 * 19 17 15 36 36 H 1.08994 * 109.64413 * 68.73862 * 19 17 15 37 37 H 1.09001 * 109.68692 * 310.12070 * 20 19 17 38 38 H 1.09000 * 109.72031 * 189.57487 * 20 19 17 39 39 H 1.09003 * 109.26022 * 188.86736 * 21 20 19 40 40 H 1.08995 * 109.26298 * 69.41868 * 21 20 19 41 41 H 1.08001 * 120.56253 * 0.54329 * 23 22 21 42 42 H 1.08006 * 120.57608 * 179.97438 * 24 23 22 43 43 H 1.07994 * 119.70022 * 179.87923 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 3.5467 1.4403 0.7001 6 1 1.4466 2.6527 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 7 2.2031 -3.6126 0.0027 11 6 2.2421 -4.6216 0.8983 12 6 3.2604 -5.4424 0.5542 13 6 3.8680 -4.9160 -0.5969 14 7 4.9631 -5.4680 -1.2756 15 6 5.5270 -6.6082 -0.8300 16 8 5.0872 -7.1562 0.1586 17 6 6.7048 -7.2014 -1.5594 18 1 6.4166 -7.4229 -2.5871 19 6 7.1273 -8.4947 -0.8657 20 6 8.4463 -8.9695 -1.4866 21 6 9.5518 -8.0025 -1.0659 22 6 9.1445 -6.5808 -1.3446 23 6 10.1412 -5.6096 -1.3721 24 6 9.7858 -4.2942 -1.6151 25 6 8.4532 -3.9908 -1.8226 26 7 7.5388 -4.9355 -1.7926 27 6 7.8384 -6.2081 -1.5649 28 7 3.2273 -3.8203 -0.9301 29 1 -0.4850 -0.8401 -0.0004 30 1 0.6248 -2.5563 0.8920 31 1 0.6242 -2.5575 -0.8880 32 1 1.5777 -4.7510 1.7397 33 1 3.5541 -6.3431 1.0729 34 1 5.3151 -5.0295 -2.0660 35 1 7.2692 -8.3099 0.1991 36 1 6.3600 -9.2553 -1.0097 37 1 8.3590 -8.9770 -2.5731 38 1 8.6806 -9.9725 -1.1301 39 1 10.4608 -8.2317 -1.6221 40 1 9.7445 -8.1188 0.0005 41 1 11.1741 -5.8779 -1.2063 42 1 10.5366 -3.5183 -1.6421 43 1 8.1603 -2.9687 -2.0114 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194388818.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:59:03 Heat of formation + Delta-G solvation = 50.810404 kcal Electronic energy + Delta-G solvation = -26912.503359 eV Core-core repulsion = 23151.050600 eV Total energy + Delta-G solvation = -3761.452759 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.44266 -41.81932 -40.34090 -37.44611 -36.36048 -35.53638 -34.41875 -32.64878 -31.43960 -31.06242 -30.93037 -28.23963 -26.01835 -25.07186 -24.25957 -24.19343 -22.78916 -21.91026 -21.02596 -20.65121 -19.25656 -18.42696 -18.09151 -17.71162 -17.48040 -16.88015 -16.57206 -16.26206 -15.74102 -15.61756 -15.35147 -15.08146 -15.02909 -14.69780 -14.61652 -14.17058 -13.96560 -13.83295 -13.71966 -13.67776 -13.35882 -13.23034 -12.91313 -12.62363 -12.10534 -11.98908 -11.98385 -11.83004 -11.65232 -11.50705 -11.03365 -11.00618 -10.71010 -10.61177 -10.40408 -9.82805 -9.74382 -9.19599 -8.79744 -6.57954 0.07537 0.29849 0.85226 1.30824 1.39714 1.48683 1.56203 1.76721 2.16205 2.31714 2.47226 2.77058 2.98916 3.09496 3.39864 3.66835 3.80819 3.85797 3.88732 4.06594 4.12111 4.13015 4.21877 4.34937 4.39644 4.54092 4.54307 4.63903 4.76474 4.77833 4.81693 4.84714 4.89921 4.98506 5.10038 5.12213 5.21266 5.26952 5.36490 5.43372 5.53544 5.74347 5.82831 5.92770 6.22428 6.26295 6.40498 6.91704 6.96727 7.11011 7.17787 8.55993 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.015988 B = 0.003092 C = 0.002654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.852930 B = 9053.137805 C =10547.014568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.019 4.019 3 Si 1.123 2.877 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.271 1.271 7 C -0.621 4.621 8 H 0.042 0.958 9 C 0.260 3.740 10 N -0.344 5.344 11 C 0.055 3.945 12 C -0.294 4.294 13 C 0.267 3.733 14 N -0.611 5.611 15 C 0.530 3.470 16 O -0.548 6.548 17 C -0.041 4.041 18 H 0.134 0.866 19 C -0.098 4.098 20 C -0.113 4.113 21 C -0.078 4.078 22 C -0.117 4.117 23 C -0.077 4.077 24 C -0.164 4.164 25 C 0.083 3.917 26 N -0.521 5.521 27 C 0.106 3.894 28 N -0.346 5.346 29 H 0.261 0.739 30 H 0.054 0.946 31 H 0.016 0.984 32 H 0.203 0.797 33 H 0.169 0.831 34 H 0.424 0.576 35 H 0.062 0.938 36 H 0.085 0.915 37 H 0.078 0.922 38 H 0.098 0.902 39 H 0.105 0.895 40 H 0.086 0.914 41 H 0.170 0.830 42 H 0.164 0.836 43 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.967 -17.978 -4.016 30.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.218 4.218 3 Si 0.944 3.056 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.196 1.196 7 C -0.659 4.659 8 H 0.061 0.939 9 C 0.141 3.859 10 N -0.126 5.126 11 C -0.093 4.093 12 C -0.325 4.325 13 C 0.012 3.988 14 N -0.261 5.261 15 C 0.317 3.683 16 O -0.424 6.424 17 C -0.062 4.062 18 H 0.152 0.848 19 C -0.136 4.136 20 C -0.150 4.150 21 C -0.115 4.115 22 C -0.119 4.119 23 C -0.103 4.103 24 C -0.183 4.183 25 C -0.076 4.076 26 N -0.230 5.230 27 C -0.029 4.029 28 N -0.177 5.177 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.034 0.966 32 H 0.220 0.780 33 H 0.186 0.814 34 H 0.264 0.736 35 H 0.081 0.919 36 H 0.104 0.896 37 H 0.096 0.904 38 H 0.117 0.883 39 H 0.123 0.877 40 H 0.105 0.895 41 H 0.187 0.813 42 H 0.181 0.819 43 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 22.437 -15.477 -4.299 27.594 hybrid contribution 0.481 -1.737 0.294 1.826 sum 22.918 -17.214 -4.006 28.941 Atomic orbital electron populations 1.70917 1.07390 1.30191 1.47375 1.27306 0.96454 1.06059 0.91997 0.82843 0.73877 0.70967 0.77947 1.19710 1.20435 1.19630 1.22295 0.94567 0.92180 1.56891 0.93940 1.19420 0.86412 0.82785 0.97333 1.48594 1.24207 1.20073 1.19689 1.23175 1.00615 0.88783 0.96773 1.21742 1.02113 1.06724 1.01895 1.19612 0.91564 0.93150 0.94490 1.42864 1.27682 1.24943 1.30564 1.21093 0.83934 0.78868 0.84386 1.90590 1.63744 1.61320 1.26773 1.20261 0.88566 0.94812 1.02594 0.84818 1.21463 0.99330 0.93118 0.99726 1.21603 0.92175 0.99746 1.01516 1.20576 0.99969 0.88004 1.02992 1.20738 0.92443 0.99106 0.99581 1.22034 1.00972 0.92024 0.95257 1.22455 0.97457 0.98526 0.99859 1.22927 0.90148 0.98618 0.95873 1.67230 1.39958 1.01682 1.14140 1.20641 0.93157 0.90629 0.98443 1.77291 1.04928 1.18349 1.17179 0.92943 0.92788 0.96588 0.78041 0.81379 0.73607 0.91894 0.89616 0.90369 0.88305 0.87695 0.89528 0.81282 0.81866 0.82306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.06 13.65 21.45 0.29 -54.77 16 2 C -0.02 -1.07 5.46 84.65 0.46 -0.61 16 3 Si 1.12 51.06 29.90 68.60 2.05 53.11 16 4 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 5 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 6 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 7 C -0.62 -36.71 9.24 25.60 0.24 -36.48 16 8 H 0.04 2.65 7.81 -2.91 -0.02 2.62 16 9 C 0.26 13.97 5.57 85.63 0.48 14.44 16 10 N -0.34 -17.22 3.66 -351.86 -1.29 -18.51 16 11 C 0.05 2.32 11.44 83.52 0.96 3.27 16 12 C -0.29 -12.48 9.61 22.11 0.21 -12.26 16 13 C 0.27 11.85 8.11 133.32 1.08 12.94 16 14 N -0.61 -22.12 4.84 -307.50 -1.49 -23.61 16 15 C 0.53 16.84 7.01 87.66 0.61 17.45 16 16 O -0.55 -20.04 12.95 -3.05 -0.04 -20.08 16 17 C -0.04 -0.88 2.70 -12.37 -0.03 -0.91 16 18 H 0.13 2.32 8.14 -2.38 -0.02 2.30 16 19 C -0.10 -1.63 4.66 30.61 0.14 -1.49 16 20 C -0.11 -1.05 5.98 30.62 0.18 -0.86 16 21 C -0.08 -0.72 5.68 29.71 0.17 -0.55 16 22 C -0.12 -1.86 5.74 -19.85 -0.11 -1.97 16 23 C -0.08 -1.00 9.75 22.54 0.22 -0.78 16 24 C -0.16 -2.48 10.12 22.31 0.23 -2.25 16 25 C 0.08 1.82 11.19 84.74 0.95 2.77 16 26 N -0.52 -13.62 7.62 -184.01 -1.40 -15.02 16 27 C 0.11 2.35 6.20 42.28 0.26 2.61 16 28 N -0.35 -17.59 12.43 -54.45 -0.68 -18.26 16 29 H 0.26 15.42 7.22 -92.71 -0.67 14.75 16 30 H 0.05 2.77 7.94 -2.39 -0.02 2.75 16 31 H 0.02 0.91 8.01 -2.39 -0.02 0.89 16 32 H 0.20 6.71 8.06 -2.91 -0.02 6.68 16 33 H 0.17 6.83 5.92 -2.91 -0.02 6.81 16 34 H 0.42 14.38 7.25 -92.71 -0.67 13.71 16 35 H 0.06 1.28 7.77 -2.39 -0.02 1.26 16 36 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.08 0.62 8.10 -2.39 -0.02 0.60 16 38 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 39 H 0.10 0.47 8.13 -2.39 -0.02 0.45 16 40 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.17 0.97 8.06 -2.91 -0.02 0.95 16 42 H 0.16 1.48 8.06 -2.91 -0.02 1.46 16 43 H 0.16 3.21 8.06 -2.91 -0.02 3.18 16 Total: -1.00 -78.33 357.77 3.96 -74.37 By element: Atomic # 1 Polarization: 26.98 SS G_CDS: 0.47 Total: 27.45 kcal Atomic # 6 Polarization: -10.72 SS G_CDS: 6.04 Total: -4.68 kcal Atomic # 7 Polarization: -125.60 SS G_CDS: -4.56 Total: -130.17 kcal Atomic # 8 Polarization: -20.04 SS G_CDS: -0.04 Total: -20.08 kcal Atomic # 14 Polarization: 51.06 SS G_CDS: 2.05 Total: 53.11 kcal Total: -78.33 3.96 -74.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194388818.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.179 kcal (2) G-P(sol) polarization free energy of solvation -78.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds