Wall clock time and date at job start Tue Mar 31 2020 14:59:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86805 * 120.00312 * 2 1 4 4 H 1.48496 * 109.47016 * 240.00402 * 3 2 1 5 5 H 1.48501 * 109.46804 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46530 * 120.00156 * 3 2 1 7 7 C 1.37884 * 119.99855 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99845 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99815 * 359.97438 * 7 2 1 10 10 N 1.46494 * 109.46846 * 180.02562 * 9 7 2 11 11 C 1.34972 * 125.97321 * 125.00359 * 10 9 7 12 12 C 1.35233 * 107.86113 * 180.02562 * 11 10 9 13 13 C 1.40410 * 107.86917 * 359.97438 * 12 11 10 14 14 N 1.40158 * 125.97114 * 179.97438 * 13 12 11 15 15 C 1.34776 * 120.00216 * 359.97438 * 14 13 12 16 16 O 1.21288 * 119.99794 * 0.02562 * 15 14 13 17 17 C 1.50704 * 119.99837 * 180.02562 * 15 14 13 18 18 H 1.09008 * 109.25053 * 60.52722 * 17 15 14 19 19 C 1.52724 * 109.25269 * 179.97438 * 17 15 14 20 20 C 1.53329 * 108.43456 * 171.58583 * 19 17 15 21 21 C 1.52761 * 108.36928 * 290.18323 * 20 19 17 22 22 C 1.50490 * 110.56443 * 50.84706 * 21 20 19 23 23 C 1.39191 * 117.97573 * 162.51624 * 22 21 20 24 24 C 1.38403 * 118.86695 * 179.68060 * 23 22 21 25 25 C 1.38233 * 118.84561 * 359.91555 * 24 23 22 26 26 N 1.31514 * 120.61258 * 0.15675 * 25 24 23 27 27 C 1.32705 * 122.39478 * 0.03370 * 26 25 24 28 28 N 1.31218 * 108.05235 * 0.22732 * 13 12 11 29 29 H 0.97001 * 119.99427 * 359.97438 * 1 2 3 30 30 H 1.09005 * 109.46710 * 60.00574 * 9 7 2 31 31 H 1.09000 * 109.47116 * 300.00638 * 9 7 2 32 32 H 1.08003 * 126.06600 * 0.02562 * 11 10 9 33 33 H 1.08005 * 126.06697 * 180.02562 * 12 11 10 34 34 H 0.97007 * 119.99990 * 180.02562 * 14 13 12 35 35 H 1.08998 * 109.64494 * 51.90659 * 19 17 15 36 36 H 1.09003 * 109.64367 * 291.26791 * 19 17 15 37 37 H 1.08996 * 109.68279 * 170.45815 * 20 19 17 38 38 H 1.09001 * 109.71468 * 49.91930 * 20 19 17 39 39 H 1.08997 * 109.25513 * 290.57021 * 21 20 19 40 40 H 1.08996 * 109.23183 * 171.11256 * 21 20 19 41 41 H 1.08001 * 120.56355 * 359.65470 * 23 22 21 42 42 H 1.08002 * 120.57797 * 179.97438 * 24 23 22 43 43 H 1.08000 * 119.69646 * 180.13303 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2843 2.7465 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 7 2.2029 -3.6127 -0.0005 11 6 2.2418 -4.6225 0.8942 12 6 3.2607 -5.4424 0.5502 13 6 3.8689 -4.9147 -0.6001 14 7 4.9654 -5.4650 -1.2778 15 6 5.5309 -6.6041 -0.8316 16 8 5.0907 -7.1531 0.1563 17 6 6.7102 -7.1955 -1.5600 18 1 7.5319 -6.4792 -1.5548 19 6 7.1519 -8.4731 -0.8495 20 6 8.2072 -9.1700 -1.7165 21 6 7.5190 -9.7174 -2.9657 22 6 6.6972 -8.6453 -3.6291 23 6 6.3087 -8.8444 -4.9507 24 6 5.5468 -7.8733 -5.5768 25 6 5.1966 -6.7400 -4.8669 26 7 5.5829 -6.5851 -3.6194 27 6 6.3169 -7.4905 -2.9848 28 7 3.2347 -3.8132 -0.9264 29 1 -0.4849 0.8401 0.0004 30 1 0.6240 -2.5567 -0.8904 31 1 0.6245 -2.5571 0.8896 32 1 1.5772 -4.7525 1.7355 33 1 3.5541 -6.3438 1.0678 34 1 5.3177 -5.0257 -2.0677 35 1 6.2947 -9.1327 -0.7150 36 1 7.5817 -8.2231 0.1205 37 1 8.6590 -9.9893 -1.1573 38 1 8.9769 -8.4543 -2.0052 39 1 6.8691 -10.5459 -2.6841 40 1 8.2750 -10.0750 -3.6646 41 1 6.5973 -9.7412 -5.4788 42 1 5.2305 -7.9991 -6.6018 43 1 4.6005 -5.9744 -5.3413 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194388833.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:59:07 Heat of formation + Delta-G solvation = 75.140485 kcal Electronic energy + Delta-G solvation = -26806.502566 eV Core-core repulsion = 23046.104838 eV Total energy + Delta-G solvation = -3760.397727 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.30035 -40.36642 -39.03114 -36.68500 -34.57348 -33.76216 -33.14819 -31.00568 -30.69852 -30.13335 -29.18696 -26.67146 -25.07600 -23.70102 -23.55371 -22.71401 -21.39739 -20.27445 -19.83848 -19.39108 -17.24076 -16.89110 -16.67224 -16.52625 -16.34062 -15.87360 -15.21590 -14.91459 -14.56391 -14.28495 -14.24074 -14.01436 -13.78314 -13.61554 -13.22270 -12.95388 -12.82557 -12.57050 -12.27735 -12.20161 -12.10386 -11.68278 -11.47599 -11.21566 -11.00080 -10.89625 -10.81936 -10.30703 -10.20133 -10.04509 -9.90613 -9.64005 -9.51377 -9.41495 -8.98033 -8.58540 -7.99184 -7.33523 -6.19908 -4.24690 0.79931 0.97573 2.42241 2.96376 3.02674 3.28790 3.31513 3.36734 3.49086 3.78400 3.93270 4.01552 4.20261 4.35884 4.43031 4.47826 4.61581 4.66983 4.79812 4.92497 5.03589 5.08871 5.14647 5.15109 5.30776 5.43520 5.45998 5.55006 5.61313 5.69164 5.80702 5.89754 5.96216 5.98532 6.05653 6.40568 6.43974 6.60010 6.76786 6.93380 7.11745 7.58299 7.70478 7.71214 7.78472 7.96657 8.13772 8.45543 8.75579 8.87235 9.40587 10.88768 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.018536 B = 0.002760 C = 0.002596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.178699 B =10141.296001 C =10784.410300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.062 3.938 3 Si 0.908 3.092 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.527 4.527 8 H 0.068 0.932 9 C 0.259 3.741 10 N -0.321 5.321 11 C 0.049 3.951 12 C -0.290 4.290 13 C 0.260 3.740 14 N -0.612 5.612 15 C 0.532 3.468 16 O -0.523 6.523 17 C -0.051 4.051 18 H 0.117 0.883 19 C -0.100 4.100 20 C -0.121 4.121 21 C -0.079 4.079 22 C -0.118 4.118 23 C -0.077 4.077 24 C -0.172 4.172 25 C 0.111 3.889 26 N -0.485 5.485 27 C 0.135 3.865 28 N -0.303 5.303 29 H 0.267 0.733 30 H 0.044 0.956 31 H 0.056 0.944 32 H 0.166 0.834 33 H 0.158 0.842 34 H 0.420 0.580 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.077 0.923 38 H 0.068 0.932 39 H 0.081 0.919 40 H 0.077 0.923 41 H 0.134 0.866 42 H 0.136 0.864 43 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.601 -20.517 -8.645 27.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.141 4.141 3 Si 0.735 3.265 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.566 4.566 8 H 0.087 0.913 9 C 0.142 3.858 10 N -0.103 5.103 11 C -0.101 4.101 12 C -0.321 4.321 13 C 0.006 3.994 14 N -0.261 5.261 15 C 0.316 3.684 16 O -0.398 6.398 17 C -0.073 4.073 18 H 0.135 0.865 19 C -0.139 4.139 20 C -0.158 4.158 21 C -0.116 4.116 22 C -0.120 4.120 23 C -0.103 4.103 24 C -0.191 4.191 25 C -0.048 4.048 26 N -0.193 5.193 27 C 0.000 4.000 28 N -0.135 5.135 29 H 0.077 0.923 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.183 0.817 33 H 0.176 0.824 34 H 0.259 0.741 35 H 0.099 0.901 36 H 0.102 0.898 37 H 0.095 0.905 38 H 0.087 0.913 39 H 0.099 0.901 40 H 0.096 0.904 41 H 0.152 0.848 42 H 0.154 0.846 43 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 14.726 -18.948 -8.327 25.401 hybrid contribution 0.624 -0.102 -0.523 0.820 sum 15.349 -19.050 -8.849 26.016 Atomic orbital electron populations 1.69915 1.06039 1.27659 1.49877 1.24945 0.94976 0.99512 0.94655 0.86388 0.79376 0.81806 0.78934 1.19922 1.21077 1.20053 1.21236 0.93990 0.89418 1.51927 0.91340 1.19707 0.85646 0.81334 0.99147 1.49072 1.23180 1.19678 1.18375 1.22535 1.00352 0.90452 0.96775 1.21526 1.02256 1.06397 1.01923 1.19192 0.91633 0.94095 0.94459 1.42602 1.28919 1.24551 1.29999 1.20080 0.83976 0.79977 0.84321 1.90627 1.62736 1.60456 1.25973 1.20189 0.97237 0.99993 0.89884 0.86546 1.21437 0.99564 0.94402 0.98451 1.21607 0.97846 1.00687 0.95700 1.20463 0.98083 0.95927 0.97136 1.20383 1.00317 0.96438 0.94877 1.21590 0.95881 0.98966 0.93878 1.22149 0.99838 0.95467 1.01673 1.22715 0.96102 0.96555 0.89419 1.67339 1.10515 1.30907 1.10582 1.20551 0.94366 0.90432 0.94692 1.77350 1.03512 1.16401 1.16192 0.92324 0.93814 0.92651 0.81658 0.82429 0.74140 0.90093 0.89818 0.90461 0.91286 0.90078 0.90411 0.84777 0.84580 0.82249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.80 13.29 55.43 0.74 -25.06 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.91 21.73 29.54 -169.99 -5.02 16.71 16 4 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.53 -15.03 9.23 -34.44 -0.32 -15.35 16 8 H 0.07 2.02 7.81 -52.49 -0.41 1.61 16 9 C 0.26 6.79 6.26 -5.19 -0.03 6.76 16 10 N -0.32 -7.80 3.67 -62.56 -0.23 -8.03 16 11 C 0.05 1.03 11.43 -17.24 -0.20 0.83 16 12 C -0.29 -6.10 9.60 -39.83 -0.38 -6.48 16 13 C 0.26 5.61 8.11 -154.39 -1.25 4.36 16 14 N -0.61 -10.80 4.85 -11.13 -0.05 -10.85 16 15 C 0.53 8.39 7.03 -10.98 -0.08 8.32 16 16 O -0.52 -9.52 12.96 5.55 0.07 -9.45 16 17 C -0.05 -0.57 2.71 -93.05 -0.25 -0.82 16 18 H 0.12 1.09 8.14 -51.92 -0.42 0.67 16 19 C -0.10 -0.91 4.65 -26.70 -0.12 -1.04 16 20 C -0.12 -0.76 5.98 -26.68 -0.16 -0.92 16 21 C -0.08 -0.50 5.68 -28.11 -0.16 -0.66 16 22 C -0.12 -1.06 5.74 -104.60 -0.60 -1.66 16 23 C -0.08 -0.60 9.75 -39.17 -0.38 -0.98 16 24 C -0.17 -1.39 10.12 -39.52 -0.40 -1.79 16 25 C 0.11 1.15 11.19 -17.69 -0.20 0.96 16 26 N -0.48 -6.08 7.54 -9.51 -0.07 -6.15 16 27 C 0.14 1.52 6.20 -82.44 -0.51 1.01 16 28 N -0.30 -7.38 12.42 31.44 0.39 -6.99 16 29 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 30 H 0.04 1.21 8.14 -51.93 -0.42 0.78 16 31 H 0.06 1.42 8.07 -51.93 -0.42 1.00 16 32 H 0.17 2.85 8.06 -52.48 -0.42 2.43 16 33 H 0.16 3.21 5.92 -52.48 -0.31 2.90 16 34 H 0.42 6.84 7.15 -40.82 -0.29 6.55 16 35 H 0.08 0.85 7.79 -51.93 -0.40 0.45 16 36 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.07 0.40 8.10 -51.93 -0.42 -0.02 16 39 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.08 0.36 8.13 -51.93 -0.42 -0.06 16 41 H 0.13 0.67 8.06 -52.49 -0.42 0.24 16 42 H 0.14 0.74 8.06 -52.49 -0.42 0.32 16 43 H 0.16 1.40 8.06 -52.49 -0.42 0.98 16 LS Contribution 358.95 15.07 5.41 5.41 Total: -1.00 -34.10 358.95 -9.53 -43.63 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -5.62 Total: 6.59 kcal Atomic # 6 Polarization: -0.67 SS G_CDS: -5.14 Total: -5.81 kcal Atomic # 7 Polarization: -57.85 SS G_CDS: 0.77 Total: -57.08 kcal Atomic # 8 Polarization: -9.52 SS G_CDS: 0.07 Total: -9.45 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.10 -9.53 -43.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194388833.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.768 kcal (2) G-P(sol) polarization free energy of solvation -34.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.627 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds