Wall clock time and date at job start Tue Mar 31 2020 14:59:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86805 * 120.00312 * 2 1 4 4 H 1.48496 * 109.47016 * 240.00402 * 3 2 1 5 5 H 1.48501 * 109.46804 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46530 * 120.00156 * 3 2 1 7 7 C 1.37884 * 119.99855 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99845 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99815 * 359.97438 * 7 2 1 10 10 N 1.46494 * 109.46846 * 180.02562 * 9 7 2 11 11 C 1.34972 * 125.97321 * 125.00359 * 10 9 7 12 12 C 1.35233 * 107.86113 * 180.02562 * 11 10 9 13 13 C 1.40410 * 107.86917 * 359.97438 * 12 11 10 14 14 N 1.40158 * 125.97114 * 179.97438 * 13 12 11 15 15 C 1.34776 * 120.00216 * 359.97438 * 14 13 12 16 16 O 1.21288 * 119.99794 * 0.02562 * 15 14 13 17 17 C 1.50704 * 119.99837 * 180.02562 * 15 14 13 18 18 H 1.09008 * 109.25053 * 60.52722 * 17 15 14 19 19 C 1.52724 * 109.25269 * 179.97438 * 17 15 14 20 20 C 1.53329 * 108.43456 * 171.58583 * 19 17 15 21 21 C 1.52761 * 108.36928 * 290.18323 * 20 19 17 22 22 C 1.50490 * 110.56443 * 50.84706 * 21 20 19 23 23 C 1.39191 * 117.97573 * 162.51624 * 22 21 20 24 24 C 1.38403 * 118.86695 * 179.68060 * 23 22 21 25 25 C 1.38233 * 118.84561 * 359.91555 * 24 23 22 26 26 N 1.31514 * 120.61258 * 0.15675 * 25 24 23 27 27 C 1.32705 * 122.39478 * 0.03370 * 26 25 24 28 28 N 1.31218 * 108.05235 * 0.22732 * 13 12 11 29 29 H 0.97001 * 119.99427 * 359.97438 * 1 2 3 30 30 H 1.09005 * 109.46710 * 60.00574 * 9 7 2 31 31 H 1.09000 * 109.47116 * 300.00638 * 9 7 2 32 32 H 1.08003 * 126.06600 * 0.02562 * 11 10 9 33 33 H 1.08005 * 126.06697 * 180.02562 * 12 11 10 34 34 H 0.97007 * 119.99990 * 180.02562 * 14 13 12 35 35 H 1.08998 * 109.64494 * 51.90659 * 19 17 15 36 36 H 1.09003 * 109.64367 * 291.26791 * 19 17 15 37 37 H 1.08996 * 109.68279 * 170.45815 * 20 19 17 38 38 H 1.09001 * 109.71468 * 49.91930 * 20 19 17 39 39 H 1.08997 * 109.25513 * 290.57021 * 21 20 19 40 40 H 1.08996 * 109.23183 * 171.11256 * 21 20 19 41 41 H 1.08001 * 120.56355 * 359.65470 * 23 22 21 42 42 H 1.08002 * 120.57797 * 179.97438 * 24 23 22 43 43 H 1.08000 * 119.69646 * 180.13303 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2843 2.7465 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 7 2.2029 -3.6127 -0.0005 11 6 2.2418 -4.6225 0.8942 12 6 3.2607 -5.4424 0.5502 13 6 3.8689 -4.9147 -0.6001 14 7 4.9654 -5.4650 -1.2778 15 6 5.5309 -6.6041 -0.8316 16 8 5.0907 -7.1531 0.1563 17 6 6.7102 -7.1955 -1.5600 18 1 7.5319 -6.4792 -1.5548 19 6 7.1519 -8.4731 -0.8495 20 6 8.2072 -9.1700 -1.7165 21 6 7.5190 -9.7174 -2.9657 22 6 6.6972 -8.6453 -3.6291 23 6 6.3087 -8.8444 -4.9507 24 6 5.5468 -7.8733 -5.5768 25 6 5.1966 -6.7400 -4.8669 26 7 5.5829 -6.5851 -3.6194 27 6 6.3169 -7.4905 -2.9848 28 7 3.2347 -3.8132 -0.9264 29 1 -0.4849 0.8401 0.0004 30 1 0.6240 -2.5567 -0.8904 31 1 0.6245 -2.5571 0.8896 32 1 1.5772 -4.7525 1.7355 33 1 3.5541 -6.3438 1.0678 34 1 5.3177 -5.0257 -2.0677 35 1 6.2947 -9.1327 -0.7150 36 1 7.5817 -8.2231 0.1205 37 1 8.6590 -9.9893 -1.1573 38 1 8.9769 -8.4543 -2.0052 39 1 6.8691 -10.5459 -2.6841 40 1 8.2750 -10.0750 -3.6646 41 1 6.5973 -9.7412 -5.4788 42 1 5.2305 -7.9991 -6.6018 43 1 4.6005 -5.9744 -5.3413 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194388833.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:59:06 Heat of formation + Delta-G solvation = 55.044250 kcal Electronic energy + Delta-G solvation = -26807.374004 eV Core-core repulsion = 23046.104838 eV Total energy + Delta-G solvation = -3761.269166 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.37664 -41.76345 -40.29040 -37.41839 -36.15040 -35.30034 -34.38569 -32.71573 -31.42133 -31.03304 -30.87168 -28.58942 -26.02821 -24.98521 -24.23082 -24.11408 -22.72216 -21.72268 -20.96839 -20.62066 -18.69764 -18.36699 -18.05482 -17.66325 -17.46604 -16.96552 -16.62920 -16.29271 -15.96456 -15.51680 -15.32219 -15.04888 -14.69228 -14.64885 -14.46257 -14.21372 -13.90811 -13.79769 -13.73823 -13.57397 -13.32686 -12.96397 -12.87931 -12.73094 -12.29281 -12.09782 -12.04042 -11.81174 -11.60443 -11.48694 -11.37266 -10.97882 -10.73041 -10.59131 -10.38150 -9.73491 -9.72290 -9.09297 -8.33928 -6.48327 0.09700 0.31885 0.93350 1.36227 1.39328 1.42621 1.45320 1.50115 2.23888 2.31012 2.44420 2.79819 2.97474 3.12013 3.42433 3.70702 3.83452 3.87682 3.98540 4.08930 4.14670 4.23345 4.28567 4.36905 4.41659 4.55779 4.65765 4.81790 4.86220 4.89816 4.91231 4.92217 4.99750 5.02242 5.13452 5.17070 5.23357 5.28890 5.38232 5.44742 5.55495 5.76139 5.79187 5.95931 6.26405 6.33094 6.63790 6.95419 7.04379 7.17379 7.21483 8.73616 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.018536 B = 0.002760 C = 0.002596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.178699 B =10141.296001 C =10784.410300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.019 3.981 3 Si 0.972 3.028 4 H -0.274 1.274 5 H -0.271 1.271 6 H -0.269 1.269 7 C -0.549 4.549 8 H 0.051 0.949 9 C 0.273 3.727 10 N -0.344 5.344 11 C 0.056 3.944 12 C -0.296 4.296 13 C 0.264 3.736 14 N -0.611 5.611 15 C 0.529 3.471 16 O -0.549 6.549 17 C -0.041 4.041 18 H 0.132 0.868 19 C -0.098 4.098 20 C -0.114 4.114 21 C -0.078 4.078 22 C -0.117 4.117 23 C -0.077 4.077 24 C -0.164 4.164 25 C 0.084 3.916 26 N -0.520 5.520 27 C 0.107 3.893 28 N -0.347 5.347 29 H 0.273 0.727 30 H 0.020 0.980 31 H 0.059 0.941 32 H 0.202 0.798 33 H 0.167 0.833 34 H 0.424 0.576 35 H 0.063 0.937 36 H 0.084 0.916 37 H 0.098 0.902 38 H 0.077 0.923 39 H 0.087 0.913 40 H 0.104 0.896 41 H 0.169 0.831 42 H 0.164 0.836 43 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.587 -22.127 -9.383 29.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.182 4.182 3 Si 0.796 3.204 4 H -0.199 1.199 5 H -0.196 1.196 6 H -0.194 1.194 7 C -0.587 4.587 8 H 0.069 0.931 9 C 0.155 3.845 10 N -0.126 5.126 11 C -0.093 4.093 12 C -0.328 4.328 13 C 0.009 3.991 14 N -0.261 5.261 15 C 0.316 3.684 16 O -0.425 6.425 17 C -0.063 4.063 18 H 0.150 0.850 19 C -0.136 4.136 20 C -0.151 4.151 21 C -0.115 4.115 22 C -0.119 4.119 23 C -0.103 4.103 24 C -0.183 4.183 25 C -0.074 4.074 26 N -0.230 5.230 27 C -0.028 4.028 28 N -0.178 5.178 29 H 0.082 0.918 30 H 0.038 0.962 31 H 0.077 0.923 32 H 0.219 0.781 33 H 0.184 0.816 34 H 0.264 0.736 35 H 0.082 0.918 36 H 0.102 0.898 37 H 0.116 0.884 38 H 0.095 0.905 39 H 0.105 0.895 40 H 0.123 0.877 41 H 0.187 0.813 42 H 0.182 0.818 43 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 16.730 -20.585 -9.072 28.035 hybrid contribution 0.018 0.270 -0.334 0.430 sum 16.749 -20.316 -9.406 27.959 Atomic orbital electron populations 1.69991 1.07217 1.28870 1.49848 1.25753 0.95872 1.02735 0.93800 0.85396 0.78306 0.77774 0.78931 1.19886 1.19575 1.19424 1.21371 0.93349 0.91013 1.53013 0.93065 1.19327 0.85665 0.81530 0.98013 1.48864 1.23713 1.20309 1.19739 1.23161 1.00430 0.88977 0.96722 1.21718 1.02386 1.06703 1.01950 1.19603 0.91866 0.93170 0.94433 1.42877 1.28022 1.25161 1.30036 1.21066 0.84530 0.78822 0.83959 1.90590 1.63821 1.60837 1.27247 1.20261 0.95155 1.00972 0.89935 0.85010 1.21458 0.99892 0.93233 0.99029 1.21604 0.96913 1.01218 0.95346 1.20569 0.98450 0.95041 0.97460 1.20724 0.99806 0.95879 0.95484 1.22030 0.94953 0.99838 0.93481 1.22458 0.98785 0.94389 1.02694 1.22948 0.97102 0.98043 0.89353 1.67212 1.11716 1.32243 1.11816 1.20621 0.95858 0.91683 0.94624 1.77273 1.04737 1.18261 1.17529 0.91778 0.96213 0.92330 0.78094 0.81598 0.73592 0.91805 0.89765 0.88358 0.90466 0.89481 0.87743 0.81340 0.81833 0.82079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.35 13.29 21.45 0.28 -53.07 16 2 C 0.02 1.06 5.46 84.66 0.46 1.53 16 3 Si 0.97 44.67 29.54 68.60 2.03 46.70 16 4 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 5 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 6 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 7 C -0.55 -32.13 9.23 25.60 0.24 -31.90 16 8 H 0.05 3.12 7.81 -2.91 -0.02 3.09 16 9 C 0.27 14.83 6.26 85.64 0.54 15.36 16 10 N -0.34 -17.23 3.67 -351.84 -1.29 -18.52 16 11 C 0.06 2.36 11.43 83.52 0.95 3.32 16 12 C -0.30 -12.64 9.60 22.11 0.21 -12.43 16 13 C 0.26 11.75 8.11 133.33 1.08 12.83 16 14 N -0.61 -22.25 4.85 -307.51 -1.49 -23.74 16 15 C 0.53 16.96 7.03 87.66 0.62 17.58 16 16 O -0.55 -20.23 12.96 -3.05 -0.04 -20.27 16 17 C -0.04 -0.91 2.71 -12.37 -0.03 -0.94 16 18 H 0.13 2.39 8.14 -2.38 -0.02 2.37 16 19 C -0.10 -1.66 4.65 30.61 0.14 -1.52 16 20 C -0.11 -1.08 5.98 30.63 0.18 -0.90 16 21 C -0.08 -0.71 5.68 29.70 0.17 -0.55 16 22 C -0.12 -1.83 5.74 -19.85 -0.11 -1.94 16 23 C -0.08 -0.96 9.75 22.54 0.22 -0.74 16 24 C -0.16 -2.33 10.12 22.31 0.23 -2.11 16 25 C 0.08 1.75 11.19 84.74 0.95 2.70 16 26 N -0.52 -13.25 7.54 -184.01 -1.39 -14.64 16 27 C 0.11 2.34 6.20 42.28 0.26 2.60 16 28 N -0.35 -17.55 12.42 -54.45 -0.68 -18.23 16 29 H 0.27 14.79 8.31 -92.71 -0.77 14.02 16 30 H 0.02 1.15 8.14 -2.38 -0.02 1.13 16 31 H 0.06 3.09 8.07 -2.39 -0.02 3.07 16 32 H 0.20 6.74 8.06 -2.91 -0.02 6.71 16 33 H 0.17 6.79 5.92 -2.91 -0.02 6.77 16 34 H 0.42 14.46 7.15 -92.70 -0.66 13.80 16 35 H 0.06 1.30 7.79 -2.39 -0.02 1.28 16 36 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 38 H 0.08 0.65 8.10 -2.39 -0.02 0.63 16 39 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.10 0.46 8.13 -2.39 -0.02 0.44 16 41 H 0.17 0.89 8.06 -2.91 -0.02 0.87 16 42 H 0.16 1.32 8.06 -2.91 -0.02 1.30 16 43 H 0.16 2.99 8.06 -2.91 -0.02 2.97 16 Total: -1.00 -75.85 358.95 3.91 -71.94 By element: Atomic # 1 Polarization: 26.55 SS G_CDS: 0.38 Total: 26.93 kcal Atomic # 6 Polarization: -3.20 SS G_CDS: 6.10 Total: 2.90 kcal Atomic # 7 Polarization: -123.63 SS G_CDS: -4.56 Total: -128.20 kcal Atomic # 8 Polarization: -20.23 SS G_CDS: -0.04 Total: -20.27 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -75.85 3.91 -71.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194388833.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.987 kcal (2) G-P(sol) polarization free energy of solvation -75.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds