Wall clock time and date at job start Tue Mar 31 2020 14:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46497 * 119.99754 * 2 1 4 4 C 1.52996 * 109.47740 * 270.00665 * 3 2 1 5 5 C 1.50695 * 109.47522 * 180.02562 * 4 3 2 6 6 C 1.38655 * 120.78792 * 269.71520 * 5 4 3 7 7 C 1.38200 * 119.16160 * 179.80003 * 6 5 4 8 8 N 1.31871 * 120.76287 * 0.48441 * 7 6 5 9 9 C 1.31864 * 121.72807 * 359.74771 * 8 7 6 10 10 C 1.38204 * 120.76670 * 0.02562 * 9 8 7 11 11 C 1.34771 * 120.00382 * 180.02562 * 2 1 3 12 12 O 1.21591 * 120.00280 * 175.02429 * 11 2 1 13 13 C 1.47535 * 119.99908 * 355.02814 * 11 2 1 14 14 C 1.39671 * 120.19725 * 316.40625 * 13 11 2 15 15 C 1.37829 * 119.92007 * 179.97438 * 14 13 11 16 16 C 1.38569 * 120.32473 * 0.02711 * 15 14 13 17 17 C 1.38024 * 120.39923 * 359.97438 * 16 15 14 18 18 C 1.38831 * 120.07593 * 359.96319 * 17 16 15 19 19 O 1.35521 * 120.16363 * 180.02562 * 18 17 16 20 20 C 1.34816 * 116.99696 * 354.64178 * 19 18 17 21 21 H 1.07993 * 120.00457 * 3.79784 * 20 19 18 22 22 C 1.38699 * 119.99465 * 183.80649 * 20 19 18 23 23 N 1.31514 * 120.00487 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 119.99622 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.46984 * 59.99880 * 24 22 20 26 26 H 1.48501 * 109.47128 * 179.97438 * 24 22 20 27 27 H 1.48494 * 109.47259 * 299.99819 * 24 22 20 28 28 H 1.09002 * 109.46942 * 266.26480 * 1 2 3 29 29 H 1.08998 * 109.47462 * 26.27045 * 1 2 3 30 30 H 1.09000 * 109.46958 * 146.26869 * 1 2 3 31 31 H 1.09008 * 109.47250 * 30.00544 * 3 2 1 32 32 H 1.08993 * 109.47212 * 150.00150 * 3 2 1 33 33 H 1.09008 * 109.46650 * 300.00246 * 4 3 2 34 34 H 1.08998 * 109.47638 * 59.99337 * 4 3 2 35 35 H 1.07997 * 120.41854 * 359.97438 * 6 5 4 36 36 H 1.08001 * 119.61892 * 180.24992 * 7 6 5 37 37 H 1.08007 * 119.61809 * 180.02562 * 9 8 7 38 38 H 1.07995 * 120.42075 * 179.97438 * 10 9 8 39 39 H 1.08000 * 120.03746 * 0.27856 * 14 13 11 40 40 H 1.07999 * 119.83499 * 179.97438 * 15 14 13 41 41 H 1.07998 * 119.80158 * 179.97438 * 16 15 14 42 42 H 1.08000 * 119.95934 * 179.97438 * 17 16 15 43 43 H 0.97001 * 120.00169 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7106 -1.4424 5 6 3.2064 3.0154 -1.4423 6 6 2.5301 4.2259 -1.4479 7 6 3.2553 5.4023 -1.4435 8 7 4.5738 5.3820 -1.4436 9 6 5.2499 4.2499 -1.4431 10 6 4.5928 3.0340 -1.4428 11 6 2.1390 -1.1671 -0.0005 12 8 3.3515 -1.1690 -0.0919 13 6 1.4056 -2.4425 0.1096 14 6 0.3630 -2.5761 1.0295 15 6 -0.3187 -3.7701 1.1272 16 6 0.0253 -4.8404 0.3172 17 6 1.0533 -4.7230 -0.5963 18 6 1.7502 -3.5277 -0.7096 19 8 2.7595 -3.4102 -1.6063 20 6 3.1116 -4.5232 -2.2807 21 1 2.5558 -5.4384 -2.1400 22 6 4.1878 -4.4929 -3.1551 23 7 4.8645 -3.3783 -3.3267 24 14 4.6761 -6.0353 -4.0890 25 1 3.5399 -6.4829 -4.9338 26 1 5.8482 -5.7411 -4.9520 27 1 5.0280 -7.1077 -3.1240 28 1 -0.3633 -0.0669 1.0255 29 1 -0.3634 0.9215 -0.4548 30 1 -0.3633 -0.8547 -0.5707 31 1 1.6084 2.0284 0.5139 32 1 3.1499 1.1385 0.5138 33 1 3.0415 0.9510 -1.9564 34 1 1.5000 1.8409 -1.9563 35 1 1.4504 4.2490 -1.4528 36 1 2.7361 6.3494 -1.4437 37 1 6.3297 4.2730 -1.4428 38 1 5.1521 2.1102 -1.4427 39 1 0.0882 -1.7434 1.6599 40 1 -1.1243 -3.8720 1.8392 41 1 -0.5143 -5.7722 0.4012 42 1 1.3156 -5.5620 -1.2238 43 1 5.6169 -3.3571 -3.9385 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000195366850.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:38 Heat of formation + Delta-G solvation = 6.559376 kcal Electronic energy + Delta-G solvation = -26887.548746 eV Core-core repulsion = 23091.884367 eV Total energy + Delta-G solvation = -3795.664379 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.24688 -39.77592 -38.35405 -36.41520 -35.57194 -33.88720 -32.38320 -31.21375 -30.92122 -29.18381 -28.96844 -26.47029 -25.47866 -24.57848 -23.46384 -22.47335 -21.61724 -21.25048 -19.16065 -18.09293 -17.21446 -16.74554 -16.46433 -16.15604 -15.78513 -15.52516 -15.06191 -14.75604 -14.26722 -14.24781 -13.92072 -13.84023 -13.71661 -13.61320 -13.22727 -12.99198 -12.63246 -12.42197 -12.30319 -12.28323 -12.04640 -11.74681 -11.69429 -11.34169 -11.12916 -10.91882 -10.81944 -10.74481 -10.49609 -9.65933 -9.61993 -9.52223 -9.17882 -9.03428 -8.90463 -8.30373 -8.26168 -7.36690 -6.49621 -4.09503 1.10903 1.22275 1.75210 2.26759 3.09062 3.11427 3.13826 3.31740 3.55475 3.80030 3.90326 4.42275 4.48778 4.70201 4.73227 4.99218 5.01956 5.07301 5.12099 5.15902 5.28833 5.31669 5.36957 5.45893 5.50454 5.61754 5.64629 5.74331 5.77295 5.87772 5.91208 5.98599 6.02549 6.11929 6.23194 6.44024 6.53371 6.61707 6.69817 6.86376 6.93782 7.01721 7.20861 7.25235 7.64778 7.80228 7.92289 7.93048 8.87555 8.92631 9.60440 10.65520 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.010634 B = 0.003733 C = 0.002861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2632.540980 B = 7498.114304 C = 9785.232794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.626 5.626 3 C 0.132 3.868 4 C -0.104 4.104 5 C -0.028 4.028 6 C -0.173 4.173 7 C 0.093 3.907 8 N -0.494 5.494 9 C 0.098 3.902 10 C -0.163 4.163 11 C 0.571 3.429 12 O -0.509 6.509 13 C -0.221 4.221 14 C -0.042 4.042 15 C -0.227 4.227 16 C -0.053 4.053 17 C -0.237 4.237 18 C 0.189 3.811 19 O -0.144 6.144 20 C -0.401 4.401 21 H 0.094 0.906 22 C 0.045 3.955 23 N -0.842 5.842 24 Si 0.941 3.059 25 H -0.269 1.269 26 H -0.277 1.277 27 H -0.268 1.268 28 H 0.052 0.948 29 H 0.063 0.937 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.091 0.909 34 H 0.076 0.924 35 H 0.132 0.868 36 H 0.152 0.848 37 H 0.155 0.845 38 H 0.140 0.860 39 H 0.117 0.883 40 H 0.110 0.890 41 H 0.110 0.890 42 H 0.132 0.868 43 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.995 9.815 4.970 14.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.362 5.362 3 C 0.008 3.992 4 C -0.142 4.142 5 C -0.037 4.037 6 C -0.193 4.193 7 C -0.063 4.063 8 N -0.203 5.203 9 C -0.059 4.059 10 C -0.183 4.183 11 C 0.361 3.639 12 O -0.383 6.383 13 C -0.225 4.225 14 C -0.060 4.060 15 C -0.246 4.246 16 C -0.072 4.072 17 C -0.256 4.256 18 C 0.131 3.869 19 O -0.044 6.044 20 C -0.477 4.477 21 H 0.111 0.889 22 C -0.162 4.162 23 N -0.474 5.474 24 Si 0.765 3.235 25 H -0.194 1.194 26 H -0.201 1.201 27 H -0.193 1.193 28 H 0.070 0.930 29 H 0.082 0.918 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.101 0.899 33 H 0.110 0.890 34 H 0.094 0.906 35 H 0.150 0.850 36 H 0.169 0.831 37 H 0.172 0.828 38 H 0.158 0.842 39 H 0.135 0.865 40 H 0.128 0.872 41 H 0.128 0.872 42 H 0.149 0.851 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -7.474 10.875 4.681 14.001 hybrid contribution -0.426 -1.681 -0.517 1.809 sum -7.900 9.194 4.164 12.817 Atomic orbital electron populations 1.21833 0.79984 1.02836 1.01263 1.47764 1.06601 1.05446 1.76352 1.21212 0.97963 0.84859 0.95124 1.21102 1.00452 0.93673 0.99015 1.20304 0.93996 0.95291 0.94081 1.22050 1.01296 0.92963 1.03015 1.22693 0.89971 0.97961 0.95720 1.67652 1.09290 1.30797 1.12595 1.22767 1.00428 0.87573 0.95100 1.22260 0.94817 1.00281 1.00922 1.18278 0.87070 0.83051 0.75528 1.90824 1.13699 1.86708 1.47075 1.18729 1.04328 0.93984 1.05490 1.20870 0.92422 0.97228 0.95494 1.20483 1.04603 0.94449 1.05085 1.20896 0.95010 0.97518 0.93749 1.21140 1.00809 0.98908 1.04726 1.19196 0.87976 0.91765 0.88004 1.84021 1.41606 1.35454 1.43295 1.21375 1.14986 0.88663 1.22625 0.88884 1.25345 0.95040 0.98772 0.97045 1.70065 1.18037 1.25955 1.33349 0.85789 0.78585 0.79927 0.79192 1.19397 1.20147 1.19327 0.92986 0.91840 0.90575 0.91009 0.89938 0.89047 0.90560 0.84986 0.83051 0.82778 0.84192 0.86496 0.87218 0.87174 0.85080 0.91792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.01 8.99 59.85 0.54 1.55 16 2 N -0.63 -10.07 2.87 -182.81 -0.53 -10.59 16 3 C 0.13 1.85 5.33 -4.05 -0.02 1.83 16 4 C -0.10 -1.45 5.72 -27.89 -0.16 -1.61 16 5 C -0.03 -0.36 5.17 -104.32 -0.54 -0.90 16 6 C -0.17 -1.87 9.82 -39.44 -0.39 -2.25 16 7 C 0.09 1.03 11.18 -17.55 -0.20 0.83 16 8 N -0.49 -6.42 10.36 -13.25 -0.14 -6.56 16 9 C 0.10 1.22 11.18 -17.55 -0.20 1.02 16 10 C -0.16 -2.16 9.82 -39.44 -0.39 -2.55 16 11 C 0.57 12.23 7.04 -12.47 -0.09 12.14 16 12 O -0.51 -13.27 15.93 -8.38 -0.13 -13.40 16 13 C -0.22 -4.66 4.91 -104.81 -0.51 -5.18 16 14 C -0.04 -0.70 7.94 -39.20 -0.31 -1.01 16 15 C -0.23 -3.60 10.02 -39.61 -0.40 -4.00 16 16 C -0.05 -0.91 10.03 -39.54 -0.40 -1.31 16 17 C -0.24 -4.96 9.16 -39.44 -0.36 -5.32 16 18 C 0.19 4.56 6.63 -38.60 -0.26 4.31 16 19 O -0.14 -4.15 8.64 -12.88 -0.11 -4.26 16 20 C -0.40 -11.14 9.49 30.90 0.29 -10.85 16 21 H 0.09 2.35 5.20 -52.49 -0.27 2.07 16 22 C 0.04 1.23 5.49 -17.52 -0.10 1.14 16 23 N -0.84 -24.86 13.67 55.48 0.76 -24.10 16 24 Si 0.94 20.29 29.55 -169.99 -5.02 15.27 16 25 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 26 H -0.28 -5.85 7.11 56.52 0.40 -5.44 16 27 H -0.27 -5.62 7.11 56.52 0.40 -5.21 16 28 H 0.05 0.52 6.75 -51.93 -0.35 0.17 16 29 H 0.06 0.59 8.04 -51.93 -0.42 0.18 16 30 H 0.08 1.02 6.65 -51.93 -0.35 0.67 16 31 H 0.07 0.78 8.07 -51.92 -0.42 0.36 16 32 H 0.08 1.32 7.49 -51.93 -0.39 0.93 16 33 H 0.09 1.62 8.10 -51.92 -0.42 1.20 16 34 H 0.08 0.94 8.10 -51.93 -0.42 0.52 16 35 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 36 H 0.15 1.21 8.06 -52.49 -0.42 0.79 16 37 H 0.15 1.55 8.06 -52.48 -0.42 1.13 16 38 H 0.14 1.92 8.06 -52.49 -0.42 1.49 16 39 H 0.12 1.61 6.11 -52.49 -0.32 1.29 16 40 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 41 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 42 H 0.13 2.72 5.64 -52.49 -0.30 2.42 16 43 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 367.09 15.07 5.53 5.53 Total: -1.00 -34.63 367.09 -8.44 -43.07 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: -5.32 Total: 7.20 kcal Atomic # 6 Polarization: -8.69 SS G_CDS: -3.48 Total: -12.16 kcal Atomic # 7 Polarization: -41.34 SS G_CDS: 0.10 Total: -41.25 kcal Atomic # 8 Polarization: -17.41 SS G_CDS: -0.24 Total: -17.66 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.63 -8.44 -43.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195366850.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.632 kcal (2) G-P(sol) polarization free energy of solvation -34.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds