Wall clock time and date at job start Tue Mar 31 2020 14:16:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46497 * 119.99754 * 2 1 4 4 C 1.52996 * 109.47740 * 270.00665 * 3 2 1 5 5 C 1.50695 * 109.47522 * 180.02562 * 4 3 2 6 6 C 1.38655 * 120.78792 * 269.71520 * 5 4 3 7 7 C 1.38200 * 119.16160 * 179.80003 * 6 5 4 8 8 N 1.31871 * 120.76287 * 0.48441 * 7 6 5 9 9 C 1.31864 * 121.72807 * 359.74771 * 8 7 6 10 10 C 1.38204 * 120.76670 * 0.02562 * 9 8 7 11 11 C 1.34771 * 120.00382 * 180.02562 * 2 1 3 12 12 O 1.21591 * 120.00280 * 175.02429 * 11 2 1 13 13 C 1.47535 * 119.99908 * 355.02814 * 11 2 1 14 14 C 1.39671 * 120.19725 * 316.40625 * 13 11 2 15 15 C 1.37829 * 119.92007 * 179.97438 * 14 13 11 16 16 C 1.38569 * 120.32473 * 0.02711 * 15 14 13 17 17 C 1.38024 * 120.39923 * 359.97438 * 16 15 14 18 18 C 1.38831 * 120.07593 * 359.96319 * 17 16 15 19 19 O 1.35521 * 120.16363 * 180.02562 * 18 17 16 20 20 C 1.34816 * 116.99696 * 354.64178 * 19 18 17 21 21 H 1.07993 * 120.00457 * 3.79784 * 20 19 18 22 22 C 1.38699 * 119.99465 * 183.80649 * 20 19 18 23 23 N 1.31514 * 120.00487 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 119.99622 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.46984 * 59.99880 * 24 22 20 26 26 H 1.48501 * 109.47128 * 179.97438 * 24 22 20 27 27 H 1.48494 * 109.47259 * 299.99819 * 24 22 20 28 28 H 1.09002 * 109.46942 * 266.26480 * 1 2 3 29 29 H 1.08998 * 109.47462 * 26.27045 * 1 2 3 30 30 H 1.09000 * 109.46958 * 146.26869 * 1 2 3 31 31 H 1.09008 * 109.47250 * 30.00544 * 3 2 1 32 32 H 1.08993 * 109.47212 * 150.00150 * 3 2 1 33 33 H 1.09008 * 109.46650 * 300.00246 * 4 3 2 34 34 H 1.08998 * 109.47638 * 59.99337 * 4 3 2 35 35 H 1.07997 * 120.41854 * 359.97438 * 6 5 4 36 36 H 1.08001 * 119.61892 * 180.24992 * 7 6 5 37 37 H 1.08007 * 119.61809 * 180.02562 * 9 8 7 38 38 H 1.07995 * 120.42075 * 179.97438 * 10 9 8 39 39 H 1.08000 * 120.03746 * 0.27856 * 14 13 11 40 40 H 1.07999 * 119.83499 * 179.97438 * 15 14 13 41 41 H 1.07998 * 119.80158 * 179.97438 * 16 15 14 42 42 H 1.08000 * 119.95934 * 179.97438 * 17 16 15 43 43 H 0.97001 * 120.00169 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7106 -1.4424 5 6 3.2064 3.0154 -1.4423 6 6 2.5301 4.2259 -1.4479 7 6 3.2553 5.4023 -1.4435 8 7 4.5738 5.3820 -1.4436 9 6 5.2499 4.2499 -1.4431 10 6 4.5928 3.0340 -1.4428 11 6 2.1390 -1.1671 -0.0005 12 8 3.3515 -1.1690 -0.0919 13 6 1.4056 -2.4425 0.1096 14 6 0.3630 -2.5761 1.0295 15 6 -0.3187 -3.7701 1.1272 16 6 0.0253 -4.8404 0.3172 17 6 1.0533 -4.7230 -0.5963 18 6 1.7502 -3.5277 -0.7096 19 8 2.7595 -3.4102 -1.6063 20 6 3.1116 -4.5232 -2.2807 21 1 2.5558 -5.4384 -2.1400 22 6 4.1878 -4.4929 -3.1551 23 7 4.8645 -3.3783 -3.3267 24 14 4.6761 -6.0353 -4.0890 25 1 3.5399 -6.4829 -4.9338 26 1 5.8482 -5.7411 -4.9520 27 1 5.0280 -7.1077 -3.1240 28 1 -0.3633 -0.0669 1.0255 29 1 -0.3634 0.9215 -0.4548 30 1 -0.3633 -0.8547 -0.5707 31 1 1.6084 2.0284 0.5139 32 1 3.1499 1.1385 0.5138 33 1 3.0415 0.9510 -1.9564 34 1 1.5000 1.8409 -1.9563 35 1 1.4504 4.2490 -1.4528 36 1 2.7361 6.3494 -1.4437 37 1 6.3297 4.2730 -1.4428 38 1 5.1521 2.1102 -1.4427 39 1 0.0882 -1.7434 1.6599 40 1 -1.1243 -3.8720 1.8392 41 1 -0.5143 -5.7722 0.4012 42 1 1.3156 -5.5620 -1.2238 43 1 5.6169 -3.3571 -3.9385 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000195366850.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:37 Heat of formation + Delta-G solvation = -15.933747 kcal Electronic energy + Delta-G solvation = -26888.524120 eV Core-core repulsion = 23091.884367 eV Total energy + Delta-G solvation = -3796.639754 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.50883 -41.07177 -39.98177 -38.06482 -36.99662 -35.05787 -34.34716 -32.33519 -32.14082 -30.62344 -30.32656 -27.63102 -27.42249 -25.87474 -24.40193 -23.85388 -23.14072 -22.43870 -20.64587 -19.90620 -18.80966 -17.98857 -17.72890 -17.28248 -17.14240 -16.60556 -16.50426 -16.36586 -15.77741 -15.68615 -15.46127 -15.31796 -14.85007 -14.80063 -14.49730 -14.35440 -14.16374 -13.89214 -13.59982 -13.44286 -13.39105 -13.20903 -12.94124 -12.66758 -12.63475 -12.48204 -12.30864 -12.14676 -11.94876 -11.45222 -10.84426 -10.74010 -10.64164 -10.47749 -10.10616 -9.80801 -9.58899 -9.05027 -8.48072 -6.18340 0.18228 0.20782 0.23632 0.71640 1.30660 1.43225 1.48213 1.84378 2.12961 2.14870 2.82735 2.84412 3.15290 3.43582 3.55619 3.62585 3.71901 3.82582 4.08138 4.11131 4.13637 4.21180 4.21751 4.28039 4.35324 4.43527 4.54168 4.60873 4.67375 4.73525 4.76955 4.89264 4.92012 4.99111 5.00428 5.06603 5.08137 5.15065 5.42769 5.50696 5.58308 5.67434 5.70583 5.76847 5.93932 6.17046 6.41475 6.93069 6.99513 7.31729 7.75755 8.73239 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.010634 B = 0.003733 C = 0.002861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2632.540980 B = 7498.114304 C = 9785.232794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.615 5.615 3 C 0.132 3.868 4 C -0.092 4.092 5 C -0.039 4.039 6 C -0.160 4.160 7 C 0.094 3.906 8 N -0.512 5.512 9 C 0.093 3.907 10 C -0.187 4.187 11 C 0.559 3.441 12 O -0.577 6.577 13 C -0.234 4.234 14 C -0.033 4.033 15 C -0.195 4.195 16 C -0.045 4.045 17 C -0.254 4.254 18 C 0.146 3.854 19 O -0.208 6.208 20 C -0.423 4.423 21 H 0.107 0.893 22 C -0.022 4.022 23 N -0.912 5.912 24 Si 1.020 2.980 25 H -0.251 1.251 26 H -0.274 1.274 27 H -0.256 1.256 28 H 0.086 0.914 29 H 0.100 0.900 30 H 0.061 0.939 31 H 0.122 0.878 32 H 0.052 0.948 33 H 0.034 0.966 34 H 0.099 0.901 35 H 0.170 0.830 36 H 0.189 0.811 37 H 0.169 0.831 38 H 0.116 0.884 39 H 0.159 0.841 40 H 0.164 0.836 41 H 0.153 0.847 42 H 0.122 0.878 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.921 10.531 7.187 18.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.348 5.348 3 C 0.009 3.991 4 C -0.131 4.131 5 C -0.048 4.048 6 C -0.179 4.179 7 C -0.063 4.063 8 N -0.222 5.222 9 C -0.063 4.063 10 C -0.207 4.207 11 C 0.349 3.651 12 O -0.456 6.456 13 C -0.238 4.238 14 C -0.051 4.051 15 C -0.213 4.213 16 C -0.063 4.063 17 C -0.274 4.274 18 C 0.093 3.907 19 O -0.112 6.112 20 C -0.498 4.498 21 H 0.124 0.876 22 C -0.220 4.220 23 N -0.548 5.548 24 Si 0.838 3.162 25 H -0.175 1.175 26 H -0.199 1.199 27 H -0.181 1.181 28 H 0.104 0.896 29 H 0.118 0.882 30 H 0.080 0.920 31 H 0.140 0.860 32 H 0.070 0.930 33 H 0.053 0.947 34 H 0.117 0.883 35 H 0.187 0.813 36 H 0.206 0.794 37 H 0.186 0.814 38 H 0.134 0.866 39 H 0.176 0.824 40 H 0.182 0.818 41 H 0.171 0.829 42 H 0.140 0.860 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -12.514 11.607 6.949 18.428 hybrid contribution 0.722 -1.773 -0.888 2.110 sum -11.792 9.833 6.061 16.507 Atomic orbital electron populations 1.22193 0.76758 1.04244 1.03542 1.47814 1.08558 1.04445 1.74007 1.21374 0.97506 0.84932 0.95261 1.20917 1.00599 0.92895 0.98656 1.20282 0.93636 0.95715 0.95183 1.22346 1.03015 0.91419 1.01143 1.23349 0.89379 0.99582 0.93967 1.67720 1.10665 1.30562 1.13216 1.22942 1.01280 0.87131 0.94950 1.22226 0.95679 0.99965 1.02803 1.18633 0.86484 0.84872 0.75094 1.90791 1.16658 1.87812 1.50375 1.19161 1.05412 0.93304 1.05953 1.21352 0.90456 0.99282 0.93997 1.21176 1.03891 0.92658 1.03586 1.21408 0.93216 0.99850 0.91803 1.21287 1.02221 0.97614 1.06239 1.19961 0.87975 0.94168 0.88639 1.84017 1.44783 1.36230 1.46214 1.21913 1.15618 0.89360 1.22948 0.87607 1.26699 0.94739 1.02518 0.98058 1.70261 1.19666 1.29068 1.35819 0.84649 0.78542 0.75214 0.77772 1.17530 1.19864 1.18070 0.89598 0.88174 0.92038 0.86029 0.92987 0.94672 0.88271 0.81278 0.79425 0.81422 0.86570 0.82406 0.81812 0.82921 0.86000 0.92053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.49 8.99 127.77 1.15 2.64 16 2 N -0.62 -19.49 2.87 -850.55 -2.44 -21.93 16 3 C 0.13 3.68 5.33 86.38 0.46 4.14 16 4 C -0.09 -2.67 5.72 29.85 0.17 -2.50 16 5 C -0.04 -1.03 5.17 -19.67 -0.10 -1.13 16 6 C -0.16 -3.01 9.82 22.36 0.22 -2.79 16 7 C 0.09 1.82 11.18 84.68 0.95 2.76 16 8 N -0.51 -12.85 10.36 -195.84 -2.03 -14.88 16 9 C 0.09 2.41 11.18 84.68 0.95 3.36 16 10 C -0.19 -5.44 9.82 22.36 0.22 -5.22 16 11 C 0.56 25.20 7.04 86.70 0.61 25.81 16 12 O -0.58 -33.23 15.93 9.07 0.14 -33.08 16 13 C -0.23 -10.01 4.91 -19.99 -0.10 -10.11 16 14 C -0.03 -0.98 7.94 22.52 0.18 -0.80 16 15 C -0.19 -5.04 10.02 22.25 0.22 -4.82 16 16 C -0.04 -1.36 10.03 22.30 0.22 -1.14 16 17 C -0.25 -10.72 9.16 22.36 0.20 -10.52 16 18 C 0.15 7.44 6.63 22.91 0.15 7.59 16 19 O -0.21 -13.14 8.64 -7.02 -0.06 -13.20 16 20 C -0.42 -25.43 9.49 67.93 0.64 -24.78 16 21 H 0.11 5.71 5.20 -2.91 -0.02 5.70 16 22 C -0.02 -1.28 5.49 84.85 0.47 -0.81 16 23 N -0.91 -59.26 13.67 21.62 0.30 -58.96 16 24 Si 1.02 44.16 29.55 68.60 2.03 46.19 16 25 H -0.25 -9.98 7.11 99.48 0.71 -9.28 16 26 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 27 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 28 H 0.09 1.21 6.75 -2.39 -0.02 1.19 16 29 H 0.10 1.35 8.04 -2.39 -0.02 1.33 16 30 H 0.06 1.46 6.65 -2.39 -0.02 1.45 16 31 H 0.12 2.21 8.07 -2.38 -0.02 2.19 16 32 H 0.05 1.78 7.49 -2.39 -0.02 1.77 16 33 H 0.03 1.41 8.10 -2.38 -0.02 1.39 16 34 H 0.10 2.35 8.10 -2.39 -0.02 2.33 16 35 H 0.17 1.91 8.06 -2.91 -0.02 1.88 16 36 H 0.19 2.19 8.06 -2.91 -0.02 2.16 16 37 H 0.17 3.64 8.06 -2.91 -0.02 3.62 16 38 H 0.12 3.83 8.06 -2.91 -0.02 3.80 16 39 H 0.16 3.40 6.11 -2.91 -0.02 3.38 16 40 H 0.16 2.70 8.06 -2.91 -0.02 2.68 16 41 H 0.15 3.39 8.06 -2.91 -0.02 3.37 16 42 H 0.12 5.23 5.64 -2.91 -0.02 5.21 16 43 H 0.27 16.19 8.31 -92.71 -0.77 15.42 16 Total: -1.00 -90.71 367.09 5.58 -85.13 By element: Atomic # 1 Polarization: 28.03 SS G_CDS: 1.03 Total: 29.06 kcal Atomic # 6 Polarization: -24.93 SS G_CDS: 6.62 Total: -18.32 kcal Atomic # 7 Polarization: -91.60 SS G_CDS: -4.18 Total: -95.78 kcal Atomic # 8 Polarization: -46.37 SS G_CDS: 0.08 Total: -46.28 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Total: -90.71 5.58 -85.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195366850.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.193 kcal (2) G-P(sol) polarization free energy of solvation -90.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds