Wall clock time and date at job start Tue Mar 31 2020 14:18:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46497 * 120.00069 * 2 1 4 4 C 1.50702 * 109.46958 * 269.99888 * 3 2 1 5 5 H 1.08002 * 120.00068 * 359.97438 * 4 3 2 6 6 C 1.37874 * 120.00144 * 179.97438 * 4 3 2 7 7 N 1.31515 * 119.99943 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 120.00102 * 179.97438 * 6 4 3 9 9 H 1.48497 * 109.47080 * 0.02562 * 8 6 4 10 10 H 1.48496 * 109.46946 * 120.00179 * 8 6 4 11 11 H 1.48500 * 109.47202 * 240.00275 * 8 6 4 12 12 C 1.34771 * 119.99629 * 179.97438 * 2 1 3 13 13 O 1.21584 * 119.99952 * 184.80576 * 12 2 1 14 14 C 1.47615 * 120.00364 * 4.81562 * 12 2 1 15 15 C 1.40288 * 120.49535 * 321.69161 * 14 12 2 16 16 C 1.37952 * 118.35706 * 179.97438 * 15 14 12 17 17 C 1.39174 * 119.26264 * 0.02562 * 16 15 14 18 18 O 1.35502 * 119.52337 * 179.97438 * 17 16 15 19 19 C 1.42894 * 116.99893 * 179.97438 * 18 17 16 20 20 C 1.50699 * 109.47274 * 180.02562 * 19 18 17 21 21 C 1.38239 * 119.99947 * 269.72436 * 20 19 18 22 22 C 1.38232 * 119.99653 * 179.76680 * 21 20 19 23 23 C 1.38231 * 120.00356 * 0.50179 * 22 21 20 24 24 C 1.38235 * 119.99917 * 359.75238 * 23 22 21 25 25 C 1.38235 * 120.00191 * 359.97438 * 24 23 22 26 26 N 1.32398 * 120.94765 * 359.97438 * 17 16 15 27 27 C 1.31665 * 121.80371 * 0.02562 * 26 17 16 28 28 H 1.08999 * 109.47311 * 264.92289 * 1 2 3 29 29 H 1.08999 * 109.46983 * 24.92116 * 1 2 3 30 30 H 1.09000 * 109.47215 * 144.91917 * 1 2 3 31 31 H 1.08999 * 109.47554 * 29.99440 * 3 2 1 32 32 H 1.08999 * 109.47667 * 150.00081 * 3 2 1 33 33 H 0.97004 * 119.99931 * 180.02562 * 7 6 4 34 34 H 1.08002 * 120.82149 * 359.96657 * 15 14 12 35 35 H 1.07997 * 120.36786 * 180.02562 * 16 15 14 36 36 H 1.09001 * 109.47305 * 299.99820 * 19 18 17 37 37 H 1.08994 * 109.47620 * 59.99918 * 19 18 17 38 38 H 1.07994 * 119.99740 * 359.97438 * 21 20 19 39 39 H 1.08005 * 119.99887 * 180.23565 * 22 21 20 40 40 H 1.08004 * 120.00357 * 179.72203 * 23 22 21 41 41 H 1.08000 * 119.99950 * 179.97438 * 24 23 22 42 42 H 1.07994 * 120.00077 * 179.97438 * 25 24 23 43 43 H 1.08004 * 119.68861 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0982 1.0957 -2.2417 6 6 3.1260 2.8778 -1.6729 7 7 3.5534 3.6180 -0.6733 8 14 3.4380 3.4167 -3.4341 9 1 2.8609 2.4161 -4.3674 10 1 2.8000 4.7370 -3.6681 11 1 4.9006 3.5255 -3.6667 12 6 2.1388 -1.1672 0.0005 13 8 3.3515 -1.1691 0.0887 14 6 1.4047 -2.4434 -0.1062 15 6 0.1761 -2.6149 0.5490 16 6 -0.4726 -3.8254 0.4188 17 6 0.1080 -4.8289 -0.3512 18 8 -0.5243 -6.0202 -0.4823 19 6 0.1195 -7.0114 -1.2853 20 6 -0.7247 -8.2594 -1.3156 21 6 -0.5348 -9.2455 -0.3656 22 6 -1.3125 -10.3881 -0.3905 23 6 -2.2730 -10.5492 -1.3715 24 6 -2.4593 -9.5654 -2.3245 25 6 -1.6856 -8.4203 -2.2964 26 7 1.2691 -4.6363 -0.9575 27 6 1.9221 -3.4971 -0.8602 28 1 -0.3634 -0.0909 1.0236 29 1 -0.3633 0.9320 -0.4330 30 1 -0.3634 -0.8410 -0.5906 31 1 1.6085 2.0284 0.5137 32 1 3.1500 1.1384 0.5138 33 1 4.0296 4.4443 -0.8506 34 1 -0.2513 -1.8189 1.1408 35 1 -1.4203 -3.9925 0.9089 36 1 0.2437 -6.6327 -2.2998 37 1 1.0966 -7.2436 -0.8620 38 1 0.2188 -9.1217 0.3979 39 1 -1.1667 -11.1569 0.3539 40 1 -2.8775 -11.4439 -1.3936 41 1 -3.2095 -9.6915 -3.0912 42 1 -1.8309 -7.6519 -3.0412 43 1 2.8669 -3.3769 -1.3695 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000195487086.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:00 Heat of formation + Delta-G solvation = 2.181698 kcal Electronic energy + Delta-G solvation = -25737.096013 eV Core-core repulsion = 21941.241804 eV Total energy + Delta-G solvation = -3795.854209 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.86921 -39.72962 -38.91408 -37.48666 -35.01212 -33.03776 -32.66610 -32.22380 -31.28389 -30.48673 -27.82922 -26.88824 -26.02325 -24.20968 -23.41716 -22.96540 -22.40095 -21.56175 -19.23828 -18.62286 -17.52092 -16.80934 -16.58421 -16.49973 -16.40198 -15.55302 -15.40109 -15.06440 -14.70490 -14.50277 -14.33450 -14.12039 -13.79264 -13.67832 -13.31096 -13.16289 -13.12034 -12.71992 -12.40995 -12.24486 -12.14968 -11.72867 -11.55037 -11.39044 -11.23627 -11.08651 -10.91951 -10.63426 -10.20137 -9.91536 -9.88849 -9.64714 -9.29643 -9.24939 -9.04669 -8.52214 -8.46311 -7.72417 -6.07789 -4.12927 0.83106 0.92568 1.02909 1.16659 2.82304 3.26761 3.28141 3.36106 3.40264 3.53675 3.74215 4.01429 4.23283 4.39130 4.42027 4.45531 4.63035 4.74643 4.82154 4.89699 4.92866 5.04266 5.07329 5.15584 5.26508 5.28597 5.29021 5.57918 5.59849 5.64388 5.66061 5.74973 5.85894 6.05317 6.09810 6.12207 6.14167 6.20518 6.29048 6.59018 6.97287 7.09344 7.38944 7.46489 7.73928 7.88412 8.18374 8.30295 8.83135 8.98858 9.52422 11.00257 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.026445 B = 0.002067 C = 0.002016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.564679 B =13541.263221 C =13883.973902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.593 5.593 3 C 0.244 3.756 4 C -0.528 4.528 5 H 0.058 0.942 6 C 0.061 3.939 7 N -0.893 5.893 8 Si 0.899 3.101 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.282 1.282 12 C 0.555 3.445 13 O -0.535 6.535 14 C -0.204 4.204 15 C -0.020 4.020 16 C -0.197 4.197 17 C 0.328 3.672 18 O -0.300 6.300 19 C 0.112 3.888 20 C -0.096 4.096 21 C -0.095 4.095 22 C -0.124 4.124 23 C -0.112 4.112 24 C -0.124 4.124 25 C -0.095 4.095 26 N -0.544 5.544 27 C 0.192 3.808 28 H 0.048 0.952 29 H 0.077 0.923 30 H 0.061 0.939 31 H 0.035 0.965 32 H 0.047 0.953 33 H 0.263 0.737 34 H 0.154 0.846 35 H 0.144 0.856 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.125 0.875 39 H 0.124 0.876 40 H 0.123 0.877 41 H 0.124 0.876 42 H 0.125 0.875 43 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.042 -24.701 0.743 28.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.324 5.324 3 C 0.125 3.875 4 C -0.567 4.567 5 H 0.077 0.923 6 C -0.141 4.141 7 N -0.532 5.532 8 Si 0.726 3.274 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.208 1.208 12 C 0.341 3.659 13 O -0.413 6.413 14 C -0.210 4.210 15 C -0.046 4.046 16 C -0.217 4.217 17 C 0.150 3.850 18 O -0.207 6.207 19 C 0.037 3.963 20 C -0.096 4.096 21 C -0.113 4.113 22 C -0.142 4.142 23 C -0.131 4.131 24 C -0.142 4.142 25 C -0.113 4.113 26 N -0.268 5.268 27 C 0.035 3.965 28 H 0.066 0.934 29 H 0.096 0.904 30 H 0.079 0.921 31 H 0.053 0.947 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.172 0.828 35 H 0.162 0.838 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.143 0.857 39 H 0.142 0.858 40 H 0.141 0.859 41 H 0.142 0.858 42 H 0.143 0.857 43 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -13.212 -25.277 0.444 28.525 hybrid contribution -0.103 1.018 -0.632 1.202 sum -13.315 -24.259 -0.188 27.674 Atomic orbital electron populations 1.21973 0.81634 1.03256 0.99829 1.48074 1.06168 1.07644 1.70560 1.19376 0.92759 0.77672 0.97712 1.21465 1.36671 1.06380 0.92211 0.92332 1.24941 0.95294 0.96364 0.97513 1.69942 1.38294 1.14295 1.30686 0.86430 0.78121 0.78323 0.84485 1.19784 1.20949 1.20815 1.17823 0.87041 0.82957 0.78103 1.90773 1.13371 1.86981 1.50155 1.21099 0.97634 0.97826 1.04442 1.21990 0.91922 0.96226 0.94428 1.20955 1.03557 0.92584 1.04619 1.20002 0.88501 0.85808 0.90723 1.86252 1.46806 1.20391 1.67238 1.21408 0.94692 0.84338 0.95888 1.19622 0.98189 0.94967 0.96791 1.21127 0.99193 0.93525 0.97492 1.21169 0.96278 0.97807 0.98981 1.21238 0.97918 0.99021 0.94878 1.21174 0.99749 0.94059 0.99241 1.21132 0.94427 0.97635 0.98123 1.67382 1.08701 1.25626 1.25067 1.22559 0.97147 0.85044 0.91714 0.93416 0.90376 0.92097 0.94713 0.93453 0.92706 0.82816 0.83795 0.90468 0.90474 0.85744 0.85769 0.85916 0.85757 0.85723 0.81316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.18 8.87 59.85 0.53 1.71 16 2 N -0.59 -12.43 2.86 -184.16 -0.53 -12.95 16 3 C 0.24 6.28 5.17 -5.19 -0.03 6.25 16 4 C -0.53 -14.81 9.39 -34.44 -0.32 -15.13 16 5 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 6 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 7 N -0.89 -26.27 13.29 55.43 0.74 -25.53 16 8 Si 0.90 21.69 29.54 -169.99 -5.02 16.67 16 9 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 12 C 0.55 11.64 7.37 -12.44 -0.09 11.55 16 13 O -0.53 -13.44 16.46 5.29 0.09 -13.35 16 14 C -0.20 -3.35 5.27 -104.82 -0.55 -3.90 16 15 C -0.02 -0.26 7.68 -38.92 -0.30 -0.56 16 16 C -0.20 -2.33 10.02 -39.34 -0.39 -2.72 16 17 C 0.33 4.36 7.49 -16.96 -0.13 4.23 16 18 O -0.30 -3.66 10.09 -18.20 -0.18 -3.84 16 19 C 0.11 1.16 5.43 36.00 0.20 1.35 16 20 C -0.10 -0.90 5.51 -104.62 -0.58 -1.47 16 21 C -0.10 -0.81 9.70 -39.58 -0.38 -1.19 16 22 C -0.12 -0.90 10.05 -39.59 -0.40 -1.30 16 23 C -0.11 -0.77 10.05 -39.59 -0.40 -1.17 16 24 C -0.12 -0.91 10.05 -39.58 -0.40 -1.30 16 25 C -0.10 -0.81 9.70 -39.58 -0.38 -1.19 16 26 N -0.54 -7.88 9.18 -12.96 -0.12 -7.99 16 27 C 0.19 3.00 10.79 -17.14 -0.18 2.82 16 28 H 0.05 0.59 6.86 -51.93 -0.36 0.23 16 29 H 0.08 1.23 8.03 -51.93 -0.42 0.81 16 30 H 0.06 0.82 5.83 -51.93 -0.30 0.52 16 31 H 0.03 0.90 8.07 -51.93 -0.42 0.48 16 32 H 0.05 1.37 7.36 -51.93 -0.38 0.99 16 33 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 34 H 0.15 1.68 5.29 -52.49 -0.28 1.40 16 35 H 0.14 1.33 8.06 -52.49 -0.42 0.91 16 36 H 0.08 0.79 8.04 -51.93 -0.42 0.37 16 37 H 0.08 0.79 8.04 -51.93 -0.42 0.37 16 38 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 39 H 0.12 0.64 8.06 -52.48 -0.42 0.22 16 40 H 0.12 0.57 8.06 -52.48 -0.42 0.14 16 41 H 0.12 0.65 8.06 -52.49 -0.42 0.22 16 42 H 0.12 0.93 8.06 -52.49 -0.42 0.50 16 43 H 0.17 2.59 8.05 -52.48 -0.42 2.17 16 LS Contribution 370.77 15.07 5.59 5.59 Total: -1.00 -33.74 370.77 -8.84 -42.58 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: -5.50 Total: -0.77 kcal Atomic # 6 Polarization: 3.52 SS G_CDS: -3.91 Total: -0.39 kcal Atomic # 7 Polarization: -46.57 SS G_CDS: 0.09 Total: -46.48 kcal Atomic # 8 Polarization: -17.10 SS G_CDS: -0.10 Total: -17.19 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.74 -8.84 -42.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195487086.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.760 kcal (2) G-P(sol) polarization free energy of solvation -33.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.578 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds