Wall clock time and date at job start Tue Mar 31 2020 14:18:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46497 * 120.00069 * 2 1 4 4 C 1.50702 * 109.46958 * 269.99888 * 3 2 1 5 5 H 1.08002 * 120.00068 * 359.97438 * 4 3 2 6 6 C 1.37874 * 120.00144 * 179.97438 * 4 3 2 7 7 N 1.31515 * 119.99943 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 120.00102 * 179.97438 * 6 4 3 9 9 H 1.48497 * 109.47080 * 0.02562 * 8 6 4 10 10 H 1.48496 * 109.46946 * 120.00179 * 8 6 4 11 11 H 1.48500 * 109.47202 * 240.00275 * 8 6 4 12 12 C 1.34771 * 119.99629 * 179.97438 * 2 1 3 13 13 O 1.21584 * 119.99952 * 184.80576 * 12 2 1 14 14 C 1.47615 * 120.00364 * 4.81562 * 12 2 1 15 15 C 1.40288 * 120.49535 * 321.69161 * 14 12 2 16 16 C 1.37952 * 118.35706 * 179.97438 * 15 14 12 17 17 C 1.39174 * 119.26264 * 0.02562 * 16 15 14 18 18 O 1.35502 * 119.52337 * 179.97438 * 17 16 15 19 19 C 1.42894 * 116.99893 * 179.97438 * 18 17 16 20 20 C 1.50699 * 109.47274 * 180.02562 * 19 18 17 21 21 C 1.38239 * 119.99947 * 269.72436 * 20 19 18 22 22 C 1.38232 * 119.99653 * 179.76680 * 21 20 19 23 23 C 1.38231 * 120.00356 * 0.50179 * 22 21 20 24 24 C 1.38235 * 119.99917 * 359.75238 * 23 22 21 25 25 C 1.38235 * 120.00191 * 359.97438 * 24 23 22 26 26 N 1.32398 * 120.94765 * 359.97438 * 17 16 15 27 27 C 1.31665 * 121.80371 * 0.02562 * 26 17 16 28 28 H 1.08999 * 109.47311 * 264.92289 * 1 2 3 29 29 H 1.08999 * 109.46983 * 24.92116 * 1 2 3 30 30 H 1.09000 * 109.47215 * 144.91917 * 1 2 3 31 31 H 1.08999 * 109.47554 * 29.99440 * 3 2 1 32 32 H 1.08999 * 109.47667 * 150.00081 * 3 2 1 33 33 H 0.97004 * 119.99931 * 180.02562 * 7 6 4 34 34 H 1.08002 * 120.82149 * 359.96657 * 15 14 12 35 35 H 1.07997 * 120.36786 * 180.02562 * 16 15 14 36 36 H 1.09001 * 109.47305 * 299.99820 * 19 18 17 37 37 H 1.08994 * 109.47620 * 59.99918 * 19 18 17 38 38 H 1.07994 * 119.99740 * 359.97438 * 21 20 19 39 39 H 1.08005 * 119.99887 * 180.23565 * 22 21 20 40 40 H 1.08004 * 120.00357 * 179.72203 * 23 22 21 41 41 H 1.08000 * 119.99950 * 179.97438 * 24 23 22 42 42 H 1.07994 * 120.00077 * 179.97438 * 25 24 23 43 43 H 1.08004 * 119.68861 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0982 1.0957 -2.2417 6 6 3.1260 2.8778 -1.6729 7 7 3.5534 3.6180 -0.6733 8 14 3.4380 3.4167 -3.4341 9 1 2.8609 2.4161 -4.3674 10 1 2.8000 4.7370 -3.6681 11 1 4.9006 3.5255 -3.6667 12 6 2.1388 -1.1672 0.0005 13 8 3.3515 -1.1691 0.0887 14 6 1.4047 -2.4434 -0.1062 15 6 0.1761 -2.6149 0.5490 16 6 -0.4726 -3.8254 0.4188 17 6 0.1080 -4.8289 -0.3512 18 8 -0.5243 -6.0202 -0.4823 19 6 0.1195 -7.0114 -1.2853 20 6 -0.7247 -8.2594 -1.3156 21 6 -0.5348 -9.2455 -0.3656 22 6 -1.3125 -10.3881 -0.3905 23 6 -2.2730 -10.5492 -1.3715 24 6 -2.4593 -9.5654 -2.3245 25 6 -1.6856 -8.4203 -2.2964 26 7 1.2691 -4.6363 -0.9575 27 6 1.9221 -3.4971 -0.8602 28 1 -0.3634 -0.0909 1.0236 29 1 -0.3633 0.9320 -0.4330 30 1 -0.3634 -0.8410 -0.5906 31 1 1.6085 2.0284 0.5137 32 1 3.1500 1.1384 0.5138 33 1 4.0296 4.4443 -0.8506 34 1 -0.2513 -1.8189 1.1408 35 1 -1.4203 -3.9925 0.9089 36 1 0.2437 -6.6327 -2.2998 37 1 1.0966 -7.2436 -0.8620 38 1 0.2188 -9.1217 0.3979 39 1 -1.1667 -11.1569 0.3539 40 1 -2.8775 -11.4439 -1.3936 41 1 -3.2095 -9.6915 -3.0912 42 1 -1.8309 -7.6519 -3.0412 43 1 2.8669 -3.3769 -1.3695 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000195487086.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:00 Heat of formation + Delta-G solvation = -19.146911 kcal Electronic energy + Delta-G solvation = -25738.020890 eV Core-core repulsion = 21941.241804 eV Total energy + Delta-G solvation = -3796.779087 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.99548 -40.71879 -40.01019 -38.58762 -36.74070 -34.89674 -33.64541 -33.36545 -31.83743 -31.63605 -29.67018 -27.85194 -27.33805 -25.81302 -24.47959 -23.99242 -23.52635 -22.21994 -20.77443 -19.62931 -18.70115 -18.45614 -18.04282 -17.52673 -17.32148 -17.09361 -16.35580 -16.20105 -16.11736 -15.72702 -15.54939 -15.08098 -14.96429 -14.52050 -14.44906 -14.30466 -14.04633 -13.92475 -13.71726 -13.58118 -13.41818 -13.31628 -12.96288 -12.81738 -12.55818 -12.27767 -12.22543 -11.99943 -11.84710 -11.70420 -11.13348 -10.96939 -10.64983 -10.62392 -9.86409 -9.82565 -9.69386 -9.43336 -8.23346 -6.38000 -0.24982 0.11101 0.21845 0.46289 1.36633 1.38990 1.50569 1.78062 1.95366 2.25320 2.41261 2.70219 2.89429 3.06507 3.16508 3.56253 3.67621 3.78517 3.83474 4.00238 4.03831 4.12753 4.25489 4.27069 4.36429 4.41830 4.58419 4.61455 4.63899 4.71049 4.76173 4.90998 4.99457 5.00848 5.03612 5.11787 5.22851 5.23784 5.50817 5.53493 5.57915 5.59663 5.80057 6.03733 6.04193 6.08343 6.58785 6.67531 6.72472 7.22889 7.38083 8.83882 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.026445 B = 0.002067 C = 0.002016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.564679 B =13541.263221 C =13883.973902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.599 5.599 3 C 0.257 3.743 4 C -0.544 4.544 5 H 0.053 0.947 6 C 0.009 3.991 7 N -0.926 5.926 8 Si 0.967 3.033 9 H -0.268 1.268 10 H -0.269 1.269 11 H -0.282 1.282 12 C 0.551 3.449 13 O -0.592 6.592 14 C -0.221 4.221 15 C -0.007 4.007 16 C -0.181 4.181 17 C 0.326 3.674 18 O -0.299 6.299 19 C 0.113 3.887 20 C -0.114 4.114 21 C -0.109 4.109 22 C -0.129 4.129 23 C -0.114 4.114 24 C -0.129 4.129 25 C -0.108 4.108 26 N -0.552 5.552 27 C 0.186 3.814 28 H 0.087 0.913 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.032 0.968 32 H 0.003 0.997 33 H 0.268 0.732 34 H 0.180 0.820 35 H 0.181 0.819 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.129 0.871 39 H 0.145 0.855 40 H 0.148 0.852 41 H 0.145 0.855 42 H 0.129 0.871 43 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.978 -26.466 0.318 31.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.329 5.329 3 C 0.136 3.864 4 C -0.583 4.583 5 H 0.071 0.929 6 C -0.191 4.191 7 N -0.566 5.566 8 Si 0.792 3.208 9 H -0.193 1.193 10 H -0.194 1.194 11 H -0.207 1.207 12 C 0.339 3.661 13 O -0.474 6.474 14 C -0.227 4.227 15 C -0.032 4.032 16 C -0.201 4.201 17 C 0.147 3.853 18 O -0.206 6.206 19 C 0.038 3.962 20 C -0.114 4.114 21 C -0.127 4.127 22 C -0.147 4.147 23 C -0.132 4.132 24 C -0.147 4.147 25 C -0.126 4.126 26 N -0.276 5.276 27 C 0.029 3.971 28 H 0.105 0.895 29 H 0.091 0.909 30 H 0.102 0.898 31 H 0.050 0.950 32 H 0.021 0.979 33 H 0.077 0.923 34 H 0.197 0.803 35 H 0.198 0.802 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.147 0.853 39 H 0.163 0.837 40 H 0.166 0.834 41 H 0.163 0.837 42 H 0.147 0.853 43 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -16.210 -27.064 0.020 31.547 hybrid contribution 0.729 1.409 -0.464 1.652 sum -15.481 -25.655 -0.444 29.967 Atomic orbital electron populations 1.22312 0.77956 1.04086 1.02760 1.48053 1.08464 1.06089 1.70316 1.18864 0.91436 0.79847 0.96225 1.21719 1.36980 1.06599 0.92972 0.92906 1.25840 0.94881 0.96424 1.01924 1.70051 1.38830 1.14776 1.32895 0.85370 0.77888 0.78401 0.79166 1.19250 1.19360 1.20743 1.18478 0.86640 0.84287 0.76650 1.90728 1.16054 1.87956 1.52676 1.20690 0.99258 0.95598 1.07127 1.22186 0.90189 0.97378 0.93423 1.21296 1.04304 0.91188 1.03279 1.20377 0.88085 0.86566 0.90281 1.86272 1.46784 1.20201 1.67345 1.21472 0.94881 0.84456 0.95372 1.19632 0.99011 0.94789 0.97948 1.21303 0.99782 0.93974 0.97601 1.21475 0.95903 0.97776 0.99545 1.21607 0.97690 0.99670 0.94186 1.21478 0.99801 0.93598 0.99826 1.21305 0.94645 0.98517 0.98176 1.67373 1.09519 1.24904 1.25761 1.22418 0.97173 0.85426 0.92083 0.89507 0.90853 0.89765 0.95040 0.97905 0.92341 0.80291 0.80172 0.90743 0.90777 0.85312 0.83725 0.83441 0.83733 0.85299 0.82339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.03 8.87 127.77 1.13 3.16 16 2 N -0.60 -25.41 2.86 -854.84 -2.44 -27.85 16 3 C 0.26 13.78 5.17 85.63 0.44 14.23 16 4 C -0.54 -31.27 9.39 25.60 0.24 -31.03 16 5 H 0.05 3.02 7.81 -2.91 -0.02 3.00 16 6 C 0.01 0.49 5.46 84.65 0.46 0.95 16 7 N -0.93 -55.63 13.29 21.45 0.28 -55.34 16 8 Si 0.97 44.86 29.54 68.60 2.03 46.89 16 9 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 10 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 11 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 12 C 0.55 23.78 7.37 86.72 0.64 24.42 16 13 O -0.59 -31.55 16.46 -3.98 -0.07 -31.62 16 14 C -0.22 -7.15 5.27 -19.99 -0.11 -7.26 16 15 C -0.01 -0.16 7.68 22.70 0.17 0.02 16 16 C -0.18 -3.65 10.02 22.43 0.22 -3.42 16 17 C 0.33 8.02 7.49 84.83 0.64 8.66 16 18 O -0.30 -6.78 10.09 -88.03 -0.89 -7.66 16 19 C 0.11 2.27 5.43 71.24 0.39 2.65 16 20 C -0.11 -2.02 5.51 -19.86 -0.11 -2.13 16 21 C -0.11 -1.70 9.70 22.27 0.22 -1.49 16 22 C -0.13 -1.60 10.05 22.27 0.22 -1.37 16 23 C -0.11 -1.26 10.05 22.27 0.22 -1.04 16 24 C -0.13 -1.60 10.05 22.27 0.22 -1.38 16 25 C -0.11 -1.70 9.70 22.27 0.22 -1.49 16 26 N -0.55 -15.68 9.18 -307.82 -2.82 -18.51 16 27 C 0.19 5.90 10.79 85.03 0.92 6.81 16 28 H 0.09 1.83 6.86 -2.39 -0.02 1.82 16 29 H 0.07 2.20 8.03 -2.39 -0.02 2.18 16 30 H 0.08 2.04 5.83 -2.39 -0.01 2.03 16 31 H 0.03 1.68 8.07 -2.39 -0.02 1.66 16 32 H 0.00 0.17 7.36 -2.39 -0.02 0.16 16 33 H 0.27 15.02 8.31 -92.70 -0.77 14.25 16 34 H 0.18 3.16 5.29 -2.91 -0.02 3.15 16 35 H 0.18 2.39 8.06 -2.91 -0.02 2.37 16 36 H 0.07 1.51 8.04 -2.39 -0.02 1.49 16 37 H 0.07 1.51 8.04 -2.39 -0.02 1.49 16 38 H 0.13 1.78 8.06 -2.91 -0.02 1.76 16 39 H 0.14 1.11 8.06 -2.91 -0.02 1.08 16 40 H 0.15 0.85 8.06 -2.91 -0.02 0.83 16 41 H 0.14 1.12 8.06 -2.91 -0.02 1.09 16 42 H 0.13 1.79 8.06 -2.91 -0.02 1.77 16 43 H 0.16 5.20 8.05 -2.91 -0.02 5.18 16 Total: -1.00 -76.46 370.77 3.26 -73.20 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: 1.02 Total: 10.59 kcal Atomic # 6 Polarization: 4.15 SS G_CDS: 6.15 Total: 10.30 kcal Atomic # 7 Polarization: -96.72 SS G_CDS: -4.98 Total: -101.70 kcal Atomic # 8 Polarization: -38.33 SS G_CDS: -0.95 Total: -39.28 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -76.46 3.26 -73.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195487086.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.054 kcal (2) G-P(sol) polarization free energy of solvation -76.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds