Wall clock time and date at job start Tue Mar 31 2020 14:21:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34783 * 119.99747 * 2 1 4 4 O 1.21729 * 120.00137 * 179.97438 * 3 2 1 5 5 C 1.46248 * 120.00053 * 359.97438 * 3 2 1 6 6 C 1.35022 * 120.00444 * 173.22604 * 5 3 2 7 7 C 1.46969 * 119.99690 * 348.62885 * 6 5 3 8 8 C 1.40021 * 120.09783 * 316.20532 * 7 6 5 9 9 C 1.37598 * 119.89561 * 179.69649 * 8 7 6 10 10 C 1.39175 * 120.09962 * 0.60134 * 9 8 7 11 11 O 1.35572 * 119.89668 * 179.69678 * 10 9 8 12 12 C 1.34784 * 116.99989 * 174.32513 * 11 10 9 13 13 H 1.08000 * 119.99784 * 5.06088 * 12 11 10 14 14 C 1.38715 * 120.00004 * 185.06576 * 12 11 10 15 15 N 1.31509 * 120.00284 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99934 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47360 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47314 * 119.99596 * 16 14 12 19 19 H 1.48504 * 109.47050 * 239.99507 * 16 14 12 20 20 C 1.39172 * 120.20275 * 359.67415 * 10 9 8 21 21 C 1.37596 * 120.10401 * 0.02562 * 20 10 9 22 22 C 1.46497 * 120.00494 * 179.97438 * 2 1 3 23 23 C 1.47200 * 112.85081 * 228.80477 * 22 2 1 24 24 N 3.45190 * 139.11918 * 126.82604 * 2 1 3 25 25 C 1.53779 * 113.61341 * 359.97438 * 22 2 1 26 26 C 1.53784 * 87.08260 * 89.11745 * 25 22 2 27 27 C 1.53783 * 87.16825 * 25.38887 * 26 25 22 28 28 H 1.08999 * 109.47146 * 269.99786 * 1 2 3 29 29 H 1.09000 * 109.47171 * 30.00198 * 1 2 3 30 30 H 1.09002 * 109.46839 * 150.00051 * 1 2 3 31 31 H 1.07997 * 120.00317 * 353.22488 * 5 3 2 32 32 H 1.07999 * 120.00539 * 168.62432 * 6 5 3 33 33 H 1.08001 * 120.05198 * 0.02562 * 8 7 6 34 34 H 1.07997 * 119.95128 * 180.27622 * 9 8 7 35 35 H 0.96995 * 120.00047 * 180.02562 * 15 14 12 36 36 H 1.08005 * 119.94700 * 180.02562 * 20 10 9 37 37 H 1.08000 * 120.05306 * 180.02562 * 21 20 10 38 38 H 1.08999 * 113.61577 * 334.56747 * 25 22 2 39 39 H 1.08997 * 113.69014 * 203.67585 * 25 22 2 40 40 H 1.08991 * 113.61675 * 139.98435 * 26 25 22 41 41 H 1.09006 * 113.61060 * 270.80459 * 26 25 22 42 42 H 1.09001 * 113.61070 * 89.16653 * 27 26 25 43 43 H 1.08997 * 113.61396 * 220.05911 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3561 1.1674 0.0005 5 6 1.4075 2.4338 -0.0006 6 6 2.0754 3.5992 0.1374 7 6 3.4900 3.5926 0.5358 8 6 3.9254 2.7504 1.5662 9 6 5.2520 2.7431 1.9316 10 6 6.1581 3.5802 1.2872 11 8 7.4630 3.5741 1.6547 12 6 8.3102 4.3183 0.9164 13 1 7.9278 4.9479 0.1265 14 6 9.6731 4.2755 1.1709 15 7 10.1387 3.5092 2.1329 16 14 10.8471 5.3075 0.1480 17 1 10.0779 6.0769 -0.8627 18 1 11.5801 6.2475 1.0337 19 1 11.8168 4.4180 -0.5404 20 6 5.7288 4.4231 0.2664 21 6 4.4053 4.4328 -0.1100 22 6 2.1975 -1.2686 0.0006 23 6 3.2571 -1.3164 1.0213 24 7 4.0748 -1.3542 1.8084 25 6 1.2854 -2.5067 0.0018 26 6 1.3122 -2.4307 -1.5340 27 6 2.6639 -1.7099 -1.3986 28 1 -0.3633 0.0000 1.0276 29 1 -0.3633 0.8900 -0.5139 30 1 -0.3633 -0.8900 -0.5138 31 1 0.3333 2.4371 -0.1113 32 1 1.5701 4.5361 -0.0452 33 1 3.2222 2.1037 2.0697 34 1 5.5896 2.0907 2.7232 35 1 11.0917 3.4796 2.3111 36 1 6.4356 5.0707 -0.2312 37 1 4.0732 5.0869 -0.9025 38 1 0.3004 -2.3230 0.4309 39 1 1.7617 -3.4012 0.4030 40 1 1.3831 -3.4045 -2.0182 41 1 0.5242 -1.8055 -1.9540 42 1 3.5191 -2.3856 -1.3810 43 1 2.7902 -0.8839 -2.0985 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000255345276.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:21:05 Heat of formation + Delta-G solvation = 66.041023 kcal Electronic energy + Delta-G solvation = -27194.562696 eV Core-core repulsion = 23401.477635 eV Total energy + Delta-G solvation = -3793.085061 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.00287 -39.14871 -38.31808 -36.37119 -35.82892 -34.38439 -33.03803 -32.09577 -30.10870 -28.39992 -28.03363 -26.47003 -25.50229 -25.17620 -23.24835 -21.79617 -21.06958 -20.27505 -19.13342 -17.98268 -17.85083 -17.02556 -16.63115 -16.35585 -15.33424 -14.82501 -14.66977 -14.47944 -14.28699 -13.97451 -13.56806 -13.50303 -13.43413 -13.32236 -13.14489 -13.06084 -12.87118 -12.57659 -12.42399 -12.24198 -12.10631 -11.82872 -11.68535 -11.38899 -11.27305 -11.19834 -11.00974 -10.77286 -10.65512 -10.58092 -10.38919 -9.51680 -9.41548 -9.15794 -8.88896 -8.69185 -7.91249 -6.86262 -6.43831 -3.99617 1.18597 2.33829 2.47639 2.68282 2.80733 3.14332 3.15847 3.21131 3.29010 3.48306 3.87877 3.98444 4.07256 4.25293 4.45890 4.68326 4.71386 4.83135 4.94786 5.05926 5.14119 5.21110 5.28192 5.30809 5.36776 5.39470 5.51902 5.57253 5.58473 5.72700 5.74254 5.82437 5.85074 6.21031 6.28220 6.36855 6.46439 6.60492 6.79871 7.04471 7.13907 7.29849 7.39224 7.47350 7.52417 7.71717 7.93398 8.02691 8.36439 9.01414 9.73935 10.74031 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.017283 B = 0.003149 C = 0.002883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.693555 B = 8888.389170 C = 9709.372433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.603 5.603 3 C 0.540 3.460 4 O -0.493 6.493 5 C -0.271 4.271 6 C 0.035 3.965 7 C -0.194 4.194 8 C 0.012 3.988 9 C -0.198 4.198 10 C 0.173 3.827 11 O -0.172 6.172 12 C -0.390 4.390 13 H 0.095 0.905 14 C 0.038 3.962 15 N -0.858 5.858 16 Si 0.942 3.058 17 H -0.266 1.266 18 H -0.275 1.275 19 H -0.275 1.275 20 C -0.250 4.250 21 C -0.040 4.040 22 C 0.250 3.750 23 C 0.206 3.794 24 N -0.400 5.400 25 C -0.130 4.130 26 C -0.137 4.137 27 C -0.130 4.130 28 H 0.056 0.944 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.126 0.874 32 H 0.123 0.877 33 H 0.097 0.903 34 H 0.112 0.888 35 H 0.270 0.730 36 H 0.126 0.874 37 H 0.106 0.894 38 H 0.089 0.911 39 H 0.101 0.899 40 H 0.080 0.920 41 H 0.089 0.911 42 H 0.096 0.904 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.119 -8.147 -8.375 26.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.340 5.340 3 C 0.332 3.668 4 O -0.367 6.367 5 C -0.291 4.291 6 C 0.015 3.985 7 C -0.194 4.194 8 C -0.006 4.006 9 C -0.218 4.218 10 C 0.118 3.882 11 O -0.074 6.074 12 C -0.466 4.466 13 H 0.112 0.888 14 C -0.166 4.166 15 N -0.493 5.493 16 Si 0.767 3.233 17 H -0.190 1.190 18 H -0.201 1.201 19 H -0.201 1.201 20 C -0.270 4.270 21 C -0.058 4.058 22 C 0.160 3.840 23 C -0.114 4.114 24 N -0.076 5.076 25 C -0.169 4.169 26 C -0.174 4.174 27 C -0.169 4.169 28 H 0.075 0.925 29 H 0.099 0.901 30 H 0.096 0.904 31 H 0.144 0.856 32 H 0.141 0.859 33 H 0.115 0.885 34 H 0.130 0.870 35 H 0.080 0.920 36 H 0.144 0.856 37 H 0.124 0.876 38 H 0.108 0.892 39 H 0.120 0.880 40 H 0.099 0.901 41 H 0.108 0.892 42 H 0.114 0.886 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -21.834 -8.344 -6.881 24.366 hybrid contribution 0.181 0.557 -0.812 1.001 sum -21.653 -7.787 -7.693 24.262 Atomic orbital electron populations 1.21968 0.78995 1.03683 1.02183 1.47644 1.06597 1.03533 1.76179 1.18655 0.87800 0.83786 0.76520 1.91046 1.12920 1.86036 1.46707 1.22605 0.99407 0.91862 1.15272 1.22384 0.93273 0.96535 0.86308 1.18285 0.92477 1.05128 1.03557 1.20387 0.93972 0.92472 0.93798 1.20008 0.92438 1.03814 1.05525 1.19519 0.85512 0.91887 0.91326 1.83916 1.12666 1.60972 1.49852 1.21455 0.86977 1.22775 1.15389 0.88809 1.25346 0.96572 0.97523 0.97191 1.70040 1.14502 1.36163 1.28553 0.85624 0.79680 0.78939 0.79050 1.19008 1.20095 1.20094 1.20947 0.96364 1.06001 1.03659 1.20722 0.92682 0.95593 0.96819 1.18391 0.88322 0.86262 0.91025 1.28679 0.94454 0.94174 0.94083 1.81205 1.09300 1.06910 1.10166 1.23361 0.99914 0.95701 0.97877 1.22903 0.97737 1.01582 0.95184 1.23367 0.98230 1.01024 0.94321 0.92525 0.90053 0.90407 0.85601 0.85895 0.88514 0.87001 0.91985 0.85623 0.87558 0.89207 0.88014 0.90112 0.89230 0.88562 0.89562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.42 9.11 59.84 0.54 0.97 16 2 N -0.60 -6.37 2.92 -170.39 -0.50 -6.86 16 3 C 0.54 7.80 6.40 -13.04 -0.08 7.72 16 4 O -0.49 -9.59 10.88 5.16 0.06 -9.53 16 5 C -0.27 -3.25 9.13 -37.51 -0.34 -3.60 16 6 C 0.03 0.47 9.80 -37.19 -0.36 0.11 16 7 C -0.19 -3.63 4.53 -105.02 -0.48 -4.11 16 8 C 0.01 0.26 6.61 -39.15 -0.26 0.00 16 9 C -0.20 -4.88 9.97 -39.47 -0.39 -5.27 16 10 C 0.17 4.58 6.66 -38.89 -0.26 4.32 16 11 O -0.17 -5.25 9.74 0.73 0.01 -5.24 16 12 C -0.39 -11.42 9.48 30.91 0.29 -11.13 16 13 H 0.09 2.54 5.18 -52.49 -0.27 2.27 16 14 C 0.04 1.10 5.49 -17.51 -0.10 1.00 16 15 N -0.86 -26.18 13.67 55.48 0.76 -25.43 16 16 Si 0.94 21.22 29.55 -169.99 -5.02 16.20 16 17 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 18 H -0.28 -6.03 7.11 56.52 0.40 -5.62 16 19 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 20 C -0.25 -5.86 9.14 -39.47 -0.36 -6.23 16 21 C -0.04 -0.78 9.78 -39.15 -0.38 -1.17 16 22 C 0.25 2.69 1.07 -133.71 -0.14 2.55 16 23 C 0.21 3.23 12.87 -20.77 -0.27 2.96 16 24 N -0.40 -7.68 18.54 42.14 0.78 -6.90 16 25 C -0.13 -0.81 6.73 -25.92 -0.17 -0.99 16 26 C -0.14 -0.74 7.60 -25.92 -0.20 -0.94 16 27 C -0.13 -1.20 7.42 -25.83 -0.19 -1.40 16 28 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.08 0.36 6.02 -51.93 -0.31 0.05 16 30 H 0.08 0.26 4.81 -51.93 -0.25 0.01 16 31 H 0.13 1.00 6.14 -52.49 -0.32 0.68 16 32 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 33 H 0.10 1.94 7.04 -52.49 -0.37 1.57 16 34 H 0.11 2.80 8.06 -52.49 -0.42 2.38 16 35 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 36 H 0.13 2.90 5.62 -52.48 -0.29 2.61 16 37 H 0.11 1.73 8.06 -52.49 -0.42 1.30 16 38 H 0.09 0.39 6.31 -51.93 -0.33 0.07 16 39 H 0.10 0.60 8.09 -51.93 -0.42 0.18 16 40 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 41 H 0.09 0.39 6.82 -51.93 -0.35 0.03 16 42 H 0.10 0.90 8.09 -51.93 -0.42 0.48 16 43 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 359.45 15.07 5.42 5.42 Total: -1.00 -37.57 359.45 -6.67 -44.24 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -5.01 Total: 3.32 kcal Atomic # 6 Polarization: -12.05 SS G_CDS: -3.15 Total: -15.20 kcal Atomic # 7 Polarization: -40.23 SS G_CDS: 1.04 Total: -39.19 kcal Atomic # 8 Polarization: -14.84 SS G_CDS: 0.06 Total: -14.78 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -37.57 -6.67 -44.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255345276.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.277 kcal (2) G-P(sol) polarization free energy of solvation -37.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.236 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds