Wall clock time and date at job start Tue Mar 31 2020 14:21:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34783 * 119.99747 * 2 1 4 4 O 1.21729 * 120.00137 * 179.97438 * 3 2 1 5 5 C 1.46248 * 120.00053 * 359.97438 * 3 2 1 6 6 C 1.35022 * 120.00444 * 173.22604 * 5 3 2 7 7 C 1.46969 * 119.99690 * 348.62885 * 6 5 3 8 8 C 1.40021 * 120.09783 * 316.20532 * 7 6 5 9 9 C 1.37598 * 119.89561 * 179.69649 * 8 7 6 10 10 C 1.39175 * 120.09962 * 0.60134 * 9 8 7 11 11 O 1.35572 * 119.89668 * 179.69678 * 10 9 8 12 12 C 1.34784 * 116.99989 * 174.32513 * 11 10 9 13 13 H 1.08000 * 119.99784 * 5.06088 * 12 11 10 14 14 C 1.38715 * 120.00004 * 185.06576 * 12 11 10 15 15 N 1.31509 * 120.00284 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99934 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47360 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47314 * 119.99596 * 16 14 12 19 19 H 1.48504 * 109.47050 * 239.99507 * 16 14 12 20 20 C 1.39172 * 120.20275 * 359.67415 * 10 9 8 21 21 C 1.37596 * 120.10401 * 0.02562 * 20 10 9 22 22 C 1.46497 * 120.00494 * 179.97438 * 2 1 3 23 23 C 1.47200 * 112.85081 * 228.80477 * 22 2 1 24 24 N 3.45190 * 139.11918 * 126.82604 * 2 1 3 25 25 C 1.53779 * 113.61341 * 359.97438 * 22 2 1 26 26 C 1.53784 * 87.08260 * 89.11745 * 25 22 2 27 27 C 1.53783 * 87.16825 * 25.38887 * 26 25 22 28 28 H 1.08999 * 109.47146 * 269.99786 * 1 2 3 29 29 H 1.09000 * 109.47171 * 30.00198 * 1 2 3 30 30 H 1.09002 * 109.46839 * 150.00051 * 1 2 3 31 31 H 1.07997 * 120.00317 * 353.22488 * 5 3 2 32 32 H 1.07999 * 120.00539 * 168.62432 * 6 5 3 33 33 H 1.08001 * 120.05198 * 0.02562 * 8 7 6 34 34 H 1.07997 * 119.95128 * 180.27622 * 9 8 7 35 35 H 0.96995 * 120.00047 * 180.02562 * 15 14 12 36 36 H 1.08005 * 119.94700 * 180.02562 * 20 10 9 37 37 H 1.08000 * 120.05306 * 180.02562 * 21 20 10 38 38 H 1.08999 * 113.61577 * 334.56747 * 25 22 2 39 39 H 1.08997 * 113.69014 * 203.67585 * 25 22 2 40 40 H 1.08991 * 113.61675 * 139.98435 * 26 25 22 41 41 H 1.09006 * 113.61060 * 270.80459 * 26 25 22 42 42 H 1.09001 * 113.61070 * 89.16653 * 27 26 25 43 43 H 1.08997 * 113.61396 * 220.05911 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3561 1.1674 0.0005 5 6 1.4075 2.4338 -0.0006 6 6 2.0754 3.5992 0.1374 7 6 3.4900 3.5926 0.5358 8 6 3.9254 2.7504 1.5662 9 6 5.2520 2.7431 1.9316 10 6 6.1581 3.5802 1.2872 11 8 7.4630 3.5741 1.6547 12 6 8.3102 4.3183 0.9164 13 1 7.9278 4.9479 0.1265 14 6 9.6731 4.2755 1.1709 15 7 10.1387 3.5092 2.1329 16 14 10.8471 5.3075 0.1480 17 1 10.0779 6.0769 -0.8627 18 1 11.5801 6.2475 1.0337 19 1 11.8168 4.4180 -0.5404 20 6 5.7288 4.4231 0.2664 21 6 4.4053 4.4328 -0.1100 22 6 2.1975 -1.2686 0.0006 23 6 3.2571 -1.3164 1.0213 24 7 4.0748 -1.3542 1.8084 25 6 1.2854 -2.5067 0.0018 26 6 1.3122 -2.4307 -1.5340 27 6 2.6639 -1.7099 -1.3986 28 1 -0.3633 0.0000 1.0276 29 1 -0.3633 0.8900 -0.5139 30 1 -0.3633 -0.8900 -0.5138 31 1 0.3333 2.4371 -0.1113 32 1 1.5701 4.5361 -0.0452 33 1 3.2222 2.1037 2.0697 34 1 5.5896 2.0907 2.7232 35 1 11.0917 3.4796 2.3111 36 1 6.4356 5.0707 -0.2312 37 1 4.0732 5.0869 -0.9025 38 1 0.3004 -2.3230 0.4309 39 1 1.7617 -3.4012 0.4030 40 1 1.3831 -3.4045 -2.0182 41 1 0.5242 -1.8055 -1.9540 42 1 3.5191 -2.3856 -1.3810 43 1 2.7902 -0.8839 -2.0985 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000255345276.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:21:04 Heat of formation + Delta-G solvation = 39.667371 kcal Electronic energy + Delta-G solvation = -27195.706343 eV Core-core repulsion = 23401.477635 eV Total energy + Delta-G solvation = -3794.228708 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.90021 -40.82270 -39.64044 -38.07354 -37.13900 -35.28860 -34.63327 -33.88997 -31.89643 -29.79809 -28.86344 -27.58313 -27.15318 -25.99750 -24.46900 -23.57627 -22.54125 -21.04684 -20.35975 -19.77947 -19.08513 -18.67170 -17.81292 -17.16492 -16.46972 -16.31273 -16.28884 -15.88387 -15.61614 -15.49624 -15.18135 -14.81125 -14.68698 -14.54180 -14.39170 -14.35503 -13.89559 -13.77478 -13.69907 -13.62354 -13.56987 -13.06811 -12.75623 -12.69852 -12.64919 -12.41109 -12.16541 -12.10385 -11.95497 -11.80731 -11.46514 -11.29339 -10.97446 -10.64147 -10.39896 -9.88637 -9.55021 -8.61265 -8.53045 -6.21505 -0.05570 0.63729 1.05750 1.29439 1.37316 1.41784 1.50118 1.65966 2.13275 2.25698 2.37790 2.81851 2.90464 3.14192 3.38941 3.45893 3.54537 3.80390 3.94561 3.97518 4.06638 4.07860 4.22257 4.41773 4.46642 4.55024 4.67889 4.70080 4.73601 4.86270 4.94807 4.96549 4.99371 5.04151 5.06322 5.17986 5.19583 5.25995 5.33392 5.39140 5.60248 5.63798 5.66629 5.78906 5.97126 6.18919 6.40498 6.52984 6.90057 7.29940 7.72719 8.70856 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.017283 B = 0.003149 C = 0.002883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.693555 B = 8888.389170 C = 9709.372433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.591 5.591 3 C 0.520 3.480 4 O -0.558 6.558 5 C -0.227 4.227 6 C 0.007 3.993 7 C -0.157 4.157 8 C 0.016 3.984 9 C -0.224 4.224 10 C 0.127 3.873 11 O -0.235 6.235 12 C -0.417 4.417 13 H 0.106 0.894 14 C -0.028 4.028 15 N -0.924 5.924 16 Si 1.026 2.974 17 H -0.247 1.247 18 H -0.264 1.264 19 H -0.268 1.268 20 C -0.255 4.255 21 C -0.043 4.043 22 C 0.225 3.775 23 C 0.228 3.772 24 N -0.484 5.484 25 C -0.114 4.114 26 C -0.112 4.112 27 C -0.139 4.139 28 H 0.069 0.931 29 H 0.105 0.895 30 H 0.109 0.891 31 H 0.186 0.814 32 H 0.176 0.824 33 H 0.104 0.896 34 H 0.082 0.918 35 H 0.273 0.727 36 H 0.123 0.877 37 H 0.156 0.844 38 H 0.121 0.879 39 H 0.103 0.897 40 H 0.100 0.900 41 H 0.113 0.887 42 H 0.084 0.916 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.506 -7.626 -11.883 33.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.325 5.325 3 C 0.313 3.687 4 O -0.437 6.437 5 C -0.247 4.247 6 C -0.012 4.012 7 C -0.158 4.158 8 C -0.002 4.002 9 C -0.244 4.244 10 C 0.077 3.923 11 O -0.142 6.142 12 C -0.492 4.492 13 H 0.123 0.877 14 C -0.224 4.224 15 N -0.562 5.562 16 Si 0.844 3.156 17 H -0.170 1.170 18 H -0.189 1.189 19 H -0.193 1.193 20 C -0.275 4.275 21 C -0.061 4.061 22 C 0.135 3.865 23 C -0.091 4.091 24 N -0.161 5.161 25 C -0.153 4.153 26 C -0.149 4.149 27 C -0.180 4.180 28 H 0.087 0.913 29 H 0.123 0.877 30 H 0.127 0.873 31 H 0.203 0.797 32 H 0.193 0.807 33 H 0.122 0.878 34 H 0.100 0.900 35 H 0.082 0.918 36 H 0.141 0.859 37 H 0.173 0.827 38 H 0.139 0.861 39 H 0.121 0.879 40 H 0.119 0.881 41 H 0.132 0.868 42 H 0.102 0.898 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -28.363 -7.854 -10.405 31.216 hybrid contribution 1.567 0.149 0.185 1.585 sum -26.796 -7.705 -10.221 29.696 Atomic orbital electron populations 1.22458 0.75184 1.06543 1.03944 1.47711 1.08705 1.02231 1.73817 1.19402 0.87424 0.85884 0.75973 1.91057 1.15833 1.87172 1.49593 1.23178 1.01819 0.89617 1.10109 1.22651 0.90045 0.99654 0.88874 1.18891 0.95638 1.01093 1.00131 1.20496 0.92257 0.92906 0.94562 1.20073 0.94384 1.04186 1.05708 1.19958 0.84797 0.94004 0.93582 1.83887 1.14464 1.63618 1.52204 1.21988 0.87768 1.23373 1.16111 0.87718 1.26791 0.98184 0.98936 0.98531 1.70207 1.15045 1.39396 1.31552 0.84443 0.76667 0.77065 0.77395 1.16993 1.18872 1.19350 1.21104 0.98353 1.05272 1.02734 1.21224 0.90924 0.96347 0.97574 1.19219 0.88694 0.88458 0.90153 1.29917 0.94040 0.91760 0.93356 1.81218 1.11983 1.09670 1.13199 1.23434 1.00017 0.92945 0.98892 1.22888 0.95103 1.02338 0.94527 1.23447 1.00707 1.00937 0.92860 0.91252 0.87698 0.87264 0.79686 0.80676 0.87766 0.89995 0.91750 0.85941 0.82686 0.86100 0.87854 0.88137 0.86829 0.89767 0.91204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.26 9.11 127.77 1.16 1.42 16 2 N -0.59 -10.07 2.92 -811.19 -2.37 -12.44 16 3 C 0.52 13.38 6.40 86.32 0.55 13.93 16 4 O -0.56 -21.62 10.88 -4.44 -0.05 -21.67 16 5 C -0.23 -4.04 9.13 23.61 0.22 -3.82 16 6 C 0.01 0.15 9.80 23.82 0.23 0.38 16 7 C -0.16 -5.57 4.53 -20.13 -0.09 -5.67 16 8 C 0.02 0.70 6.61 22.55 0.15 0.85 16 9 C -0.22 -12.11 9.97 22.34 0.22 -11.89 16 10 C 0.13 7.39 6.66 22.72 0.15 7.54 16 11 O -0.24 -15.97 9.74 -20.31 -0.20 -16.17 16 12 C -0.42 -26.45 9.48 67.93 0.64 -25.81 16 13 H 0.11 6.06 5.18 -2.91 -0.02 6.05 16 14 C -0.03 -1.68 5.49 84.86 0.47 -1.21 16 15 N -0.92 -61.17 13.67 21.62 0.30 -60.88 16 16 Si 1.03 45.70 29.55 68.60 2.03 47.73 16 17 H -0.25 -10.03 7.11 99.48 0.71 -9.33 16 18 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 19 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 20 C -0.26 -12.47 9.14 22.34 0.20 -12.26 16 21 C -0.04 -1.62 9.78 22.55 0.22 -1.40 16 22 C 0.22 4.38 1.07 2.38 0.00 4.38 16 23 C 0.23 7.40 12.87 89.45 1.15 8.55 16 24 N -0.48 -20.14 18.54 20.00 0.37 -19.77 16 25 C -0.11 -0.95 6.73 31.12 0.21 -0.74 16 26 C -0.11 -0.67 7.60 31.12 0.24 -0.43 16 27 C -0.14 -2.37 7.42 31.18 0.23 -2.14 16 28 H 0.07 0.23 8.14 -2.39 -0.02 0.21 16 29 H 0.10 0.03 6.02 -2.39 -0.01 0.01 16 30 H 0.11 -0.14 4.81 -2.39 -0.01 -0.15 16 31 H 0.19 1.19 6.14 -2.91 -0.02 1.17 16 32 H 0.18 2.19 8.06 -2.91 -0.02 2.17 16 33 H 0.10 4.27 7.04 -2.91 -0.02 4.25 16 34 H 0.08 4.73 8.06 -2.91 -0.02 4.70 16 35 H 0.27 16.44 8.31 -92.71 -0.77 15.67 16 36 H 0.12 5.92 5.62 -2.91 -0.02 5.91 16 37 H 0.16 4.35 8.06 -2.91 -0.02 4.33 16 38 H 0.12 0.30 6.31 -2.39 -0.02 0.29 16 39 H 0.10 0.90 8.09 -2.39 -0.02 0.88 16 40 H 0.10 0.32 8.14 -2.39 -0.02 0.30 16 41 H 0.11 0.20 6.82 -2.38 -0.02 0.18 16 42 H 0.08 1.59 8.09 -2.39 -0.02 1.57 16 43 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -100.19 359.45 7.10 -93.09 By element: Atomic # 1 Polarization: 17.37 SS G_CDS: 1.06 Total: 18.42 kcal Atomic # 6 Polarization: -34.28 SS G_CDS: 5.96 Total: -28.32 kcal Atomic # 7 Polarization: -91.39 SS G_CDS: -1.70 Total: -93.09 kcal Atomic # 8 Polarization: -37.59 SS G_CDS: -0.25 Total: -37.83 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Total: -100.19 7.10 -93.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255345276.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.757 kcal (2) G-P(sol) polarization free energy of solvation -100.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.089 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds