Wall clock time and date at job start Tue Mar 31 2020 15:02:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86803 * 119.99972 * 2 1 4 4 H 1.48500 * 109.46718 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47113 * 299.99543 * 3 2 1 6 6 H 1.48493 * 109.47160 * 59.99638 * 3 2 1 7 7 C 1.37878 * 120.00184 * 179.97438 * 2 1 3 8 8 H 1.07990 * 120.00310 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99698 * 0.02562 * 7 2 1 10 10 N 1.46492 * 109.47101 * 180.02562 * 9 7 2 11 11 C 1.34963 * 125.97810 * 125.00342 * 10 9 7 12 12 C 1.35242 * 107.86171 * 180.02562 * 11 10 9 13 13 C 1.40398 * 107.86882 * 359.97438 * 12 11 10 14 14 N 1.40195 * 125.97579 * 179.97438 * 13 12 11 15 15 C 1.34773 * 119.99794 * 359.97438 * 14 13 12 16 16 O 1.21588 * 120.00151 * 359.72912 * 15 14 13 17 17 N 1.34784 * 119.99935 * 179.97438 * 15 14 13 18 18 C 1.46499 * 119.99893 * 179.72905 * 17 15 14 19 19 H 1.08991 * 110.26839 * 35.61754 * 18 17 15 20 20 C 1.54348 * 110.30219 * 157.80141 * 18 17 15 21 21 C 1.54346 * 102.39012 * 145.26728 * 20 18 17 22 22 C 1.51362 * 105.17229 * 333.65297 * 21 20 18 23 23 C 1.38495 * 130.38769 * 197.19223 * 22 21 20 24 24 C 1.38108 * 120.21482 * 180.02562 * 23 22 21 25 25 C 1.38257 * 119.93036 * 359.97074 * 24 23 22 26 26 C 1.38099 * 119.93880 * 0.02562 * 25 24 23 27 27 C 1.38212 * 109.75973 * 17.18747 * 22 21 20 28 28 N 1.31213 * 108.05485 * 0.24782 * 13 12 11 29 29 H 0.96996 * 119.99774 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.47277 * 60.00015 * 9 7 2 31 31 H 1.09003 * 109.46984 * 300.00346 * 9 7 2 32 32 H 1.08003 * 126.06919 * 359.95971 * 11 10 9 33 33 H 1.08004 * 126.06992 * 179.97438 * 12 11 10 34 34 H 0.97004 * 120.00188 * 180.02562 * 14 13 12 35 35 H 0.97005 * 119.99846 * 359.72693 * 17 15 14 36 36 H 1.09001 * 110.82032 * 263.49725 * 20 18 17 37 37 H 1.09000 * 110.82353 * 27.04262 * 20 18 17 38 38 H 1.09007 * 110.30032 * 214.72363 * 21 20 18 39 39 H 1.09005 * 110.38295 * 92.62196 * 21 20 18 40 40 H 1.07998 * 119.89943 * 0.02562 * 23 22 21 41 41 H 1.07996 * 120.03601 * 179.97438 * 24 23 22 42 42 H 1.08008 * 120.02762 * 180.02562 * 25 24 23 43 43 H 1.08000 * 119.89301 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2030 -3.6126 0.0018 11 6 2.2414 -4.6220 0.8969 12 6 3.2606 -5.4421 0.5539 13 6 3.8695 -4.9148 -0.5960 14 7 4.9668 -5.4654 -1.2730 15 6 5.5321 -6.6042 -0.8259 16 8 5.0935 -7.1514 0.1674 17 7 6.5866 -7.1339 -1.4770 18 6 7.2048 -8.3686 -0.9876 19 1 6.4455 -9.0340 -0.5769 20 6 7.9751 -9.0699 -2.1266 21 6 9.1776 -9.6876 -1.3818 22 6 9.3829 -8.8108 -0.1651 23 6 10.4753 -8.6860 0.6770 24 6 10.4350 -7.8076 1.7420 25 6 9.3012 -7.0496 1.9686 26 6 8.2110 -7.1726 1.1298 27 6 8.2495 -8.0530 0.0613 28 7 3.2359 -3.8133 -0.9230 29 1 -0.4849 0.8400 -0.0004 30 1 0.6248 -2.5571 -0.8897 31 1 0.6240 -2.5566 0.8903 32 1 1.5768 -4.7512 1.7384 33 1 3.5541 -6.3428 1.0725 34 1 5.3196 -5.0263 -2.0627 35 1 6.9363 -6.6976 -2.2697 36 1 7.3640 -9.8462 -2.5870 37 1 8.3099 -8.3468 -2.8704 38 1 10.0646 -9.6695 -2.0151 39 1 8.9515 -10.7096 -1.0777 40 1 11.3615 -9.2774 0.5005 41 1 11.2884 -7.7129 2.3972 42 1 9.2682 -6.3619 2.8007 43 1 7.3255 -6.5804 1.3077 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000266405436.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:06 Heat of formation + Delta-G solvation = 82.939206 kcal Electronic energy + Delta-G solvation = -26240.848737 eV Core-core repulsion = 22480.789188 eV Total energy + Delta-G solvation = -3760.059550 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.95740 -40.35702 -39.19903 -36.37763 -34.65876 -33.80694 -33.23533 -31.23922 -30.62541 -29.27204 -29.18090 -27.10645 -26.30271 -23.19295 -22.95131 -21.99387 -21.26768 -20.85253 -20.32777 -19.74067 -17.99905 -17.02306 -16.62569 -16.52917 -16.14589 -15.46655 -15.31803 -15.09006 -15.02222 -14.52173 -14.15985 -13.94618 -13.84976 -13.38429 -13.19090 -12.92477 -12.77833 -12.33385 -12.22025 -12.13907 -12.02099 -11.76962 -11.59593 -11.32818 -11.04665 -11.02876 -10.87383 -10.40244 -10.25312 -10.06906 -9.67748 -9.46386 -9.27435 -8.95871 -8.76933 -8.62637 -8.08111 -7.39507 -6.23309 -4.28101 1.13167 1.23985 2.42043 2.67977 3.12337 3.22809 3.30320 3.36837 3.55372 3.67710 3.84855 4.02753 4.26702 4.30704 4.38946 4.62652 4.77056 4.83175 4.89411 4.98395 5.11864 5.28805 5.31948 5.41197 5.45571 5.53036 5.58054 5.70113 5.81092 5.83625 5.94625 6.19244 6.27581 6.31729 6.39088 6.49584 6.56283 6.60498 6.83163 6.89562 7.02870 7.12635 7.51789 7.71224 7.84038 7.99425 8.08701 8.60433 8.68557 8.82778 9.37499 10.85426 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.019482 B = 0.002386 C = 0.002272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.855365 B =11731.660135 C =12318.322952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.061 3.939 3 Si 0.907 3.093 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.526 4.526 8 H 0.069 0.931 9 C 0.258 3.742 10 N -0.321 5.321 11 C 0.050 3.950 12 C -0.286 4.286 13 C 0.275 3.725 14 N -0.644 5.644 15 C 0.713 3.287 16 O -0.565 6.565 17 N -0.737 5.737 18 C 0.205 3.795 19 H 0.106 0.894 20 C -0.124 4.124 21 C -0.079 4.079 22 C -0.097 4.097 23 C -0.114 4.114 24 C -0.117 4.117 25 C -0.124 4.124 26 C -0.082 4.082 27 C -0.109 4.109 28 N -0.308 5.308 29 H 0.266 0.734 30 H 0.045 0.955 31 H 0.057 0.943 32 H 0.167 0.833 33 H 0.161 0.839 34 H 0.406 0.594 35 H 0.397 0.603 36 H 0.087 0.913 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.084 0.916 40 H 0.118 0.882 41 H 0.122 0.878 42 H 0.123 0.877 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.118 -19.486 -2.423 27.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.142 4.142 3 Si 0.734 3.266 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.565 4.565 8 H 0.087 0.913 9 C 0.141 3.859 10 N -0.103 5.103 11 C -0.100 4.100 12 C -0.317 4.317 13 C 0.021 3.979 14 N -0.293 5.293 15 C 0.412 3.588 16 O -0.440 6.440 17 N -0.392 5.392 18 C 0.100 3.900 19 H 0.124 0.876 20 C -0.162 4.162 21 C -0.116 4.116 22 C -0.098 4.098 23 C -0.132 4.132 24 C -0.135 4.135 25 C -0.142 4.142 26 C -0.100 4.100 27 C -0.110 4.110 28 N -0.139 5.139 29 H 0.076 0.924 30 H 0.062 0.938 31 H 0.074 0.926 32 H 0.184 0.816 33 H 0.178 0.822 34 H 0.241 0.759 35 H 0.232 0.768 36 H 0.105 0.895 37 H 0.099 0.901 38 H 0.097 0.903 39 H 0.102 0.898 40 H 0.136 0.864 41 H 0.140 0.860 42 H 0.141 0.859 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 18.372 -18.807 -2.338 26.395 hybrid contribution 0.749 0.894 -0.076 1.169 sum 19.122 -17.913 -2.414 26.312 Atomic orbital electron populations 1.69930 1.06032 1.27486 1.49954 1.24952 0.94983 0.99551 0.94664 0.86281 0.80070 0.82503 0.77702 1.19570 1.20716 1.20768 1.21301 0.94031 0.89386 1.51774 0.91261 1.19734 0.85628 0.81333 0.99230 1.49051 1.23081 1.19773 1.18371 1.22554 1.00338 0.90327 0.96734 1.21505 1.02005 1.06486 1.01726 1.18784 0.90685 0.94008 0.94375 1.41398 1.31423 1.25083 1.31437 1.15663 0.79919 0.80185 0.83017 1.90873 1.64686 1.62289 1.26159 1.45134 1.33457 1.28237 1.32422 1.20330 0.92961 0.84980 0.91744 0.87625 1.22607 0.96431 1.00271 0.96921 1.21002 0.98428 0.98443 0.93742 1.20491 0.94075 0.97959 0.97237 1.20555 0.97721 0.99588 0.95310 1.21058 0.98213 0.96604 0.97607 1.21122 0.93456 0.99918 0.99664 1.20788 0.98536 0.97360 0.93338 1.20875 0.95725 0.97526 0.96909 1.77327 1.03754 1.16171 1.16627 0.92403 0.93764 0.92561 0.81571 0.82180 0.75916 0.76812 0.89459 0.90099 0.90341 0.89770 0.86386 0.86009 0.85894 0.85811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.44 13.29 55.43 0.74 -24.70 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.91 21.45 29.54 -169.99 -5.02 16.43 16 4 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.53 -14.73 9.23 -34.44 -0.32 -15.04 16 8 H 0.07 2.01 7.81 -52.49 -0.41 1.60 16 9 C 0.26 6.61 6.26 -5.20 -0.03 6.58 16 10 N -0.32 -7.53 3.67 -62.56 -0.23 -7.76 16 11 C 0.05 1.02 11.43 -17.24 -0.20 0.82 16 12 C -0.29 -5.73 9.61 -39.84 -0.38 -6.12 16 13 C 0.28 5.57 8.11 -154.36 -1.25 4.32 16 14 N -0.64 -9.99 5.46 -15.51 -0.08 -10.08 16 15 C 0.71 10.33 7.99 -86.91 -0.69 9.64 16 16 O -0.56 -9.95 12.61 5.29 0.07 -9.88 16 17 N -0.74 -7.45 5.12 -58.79 -0.30 -7.75 16 18 C 0.21 1.95 3.17 -68.05 -0.22 1.73 16 19 H 0.11 1.16 7.64 -51.93 -0.40 0.76 16 20 C -0.12 -0.74 6.75 -25.32 -0.17 -0.91 16 21 C -0.08 -0.48 6.77 -26.85 -0.18 -0.66 16 22 C -0.10 -0.88 6.14 -104.21 -0.64 -1.52 16 23 C -0.11 -0.99 10.04 -39.53 -0.40 -1.38 16 24 C -0.12 -1.07 10.05 -39.62 -0.40 -1.46 16 25 C -0.12 -1.32 10.05 -39.63 -0.40 -1.72 16 26 C -0.08 -1.01 9.87 -39.54 -0.39 -1.40 16 27 C -0.11 -1.18 5.78 -104.21 -0.60 -1.78 16 28 N -0.31 -7.13 12.42 31.44 0.39 -6.74 16 29 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 30 H 0.04 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.06 1.41 8.07 -51.93 -0.42 0.99 16 32 H 0.17 2.75 8.06 -52.48 -0.42 2.33 16 33 H 0.16 3.15 5.91 -52.48 -0.31 2.84 16 34 H 0.41 5.12 8.84 -40.82 -0.36 4.76 16 35 H 0.40 2.90 8.40 -40.82 -0.34 2.56 16 36 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.08 0.40 7.80 -51.93 -0.41 0.00 16 38 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 41 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 42 H 0.12 1.15 8.06 -52.48 -0.42 0.72 16 43 H 0.12 1.78 7.08 -52.49 -0.37 1.41 16 LS Contribution 364.78 15.07 5.50 5.50 Total: -1.00 -33.54 364.78 -10.85 -44.39 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -5.53 Total: 7.93 kcal Atomic # 6 Polarization: -0.97 SS G_CDS: -6.37 Total: -7.34 kcal Atomic # 7 Polarization: -57.54 SS G_CDS: 0.51 Total: -57.03 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: 0.07 Total: -9.88 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.54 -10.85 -44.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266405436.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.327 kcal (2) G-P(sol) polarization free energy of solvation -33.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.388 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds