Wall clock time and date at job start Tue Mar 31 2020 15:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86803 * 119.99972 * 2 1 4 4 H 1.48500 * 109.46718 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47113 * 299.99543 * 3 2 1 6 6 H 1.48493 * 109.47160 * 59.99638 * 3 2 1 7 7 C 1.37878 * 120.00184 * 179.97438 * 2 1 3 8 8 H 1.07990 * 120.00310 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99698 * 0.02562 * 7 2 1 10 10 N 1.46492 * 109.47101 * 180.02562 * 9 7 2 11 11 C 1.34963 * 125.97810 * 125.00342 * 10 9 7 12 12 C 1.35242 * 107.86171 * 180.02562 * 11 10 9 13 13 C 1.40398 * 107.86882 * 359.97438 * 12 11 10 14 14 N 1.40195 * 125.97579 * 179.97438 * 13 12 11 15 15 C 1.34773 * 119.99794 * 359.97438 * 14 13 12 16 16 O 1.21588 * 120.00151 * 359.72912 * 15 14 13 17 17 N 1.34784 * 119.99935 * 179.97438 * 15 14 13 18 18 C 1.46499 * 119.99893 * 179.72905 * 17 15 14 19 19 H 1.08991 * 110.26839 * 35.61754 * 18 17 15 20 20 C 1.54348 * 110.30219 * 157.80141 * 18 17 15 21 21 C 1.54346 * 102.39012 * 145.26728 * 20 18 17 22 22 C 1.51362 * 105.17229 * 333.65297 * 21 20 18 23 23 C 1.38495 * 130.38769 * 197.19223 * 22 21 20 24 24 C 1.38108 * 120.21482 * 180.02562 * 23 22 21 25 25 C 1.38257 * 119.93036 * 359.97074 * 24 23 22 26 26 C 1.38099 * 119.93880 * 0.02562 * 25 24 23 27 27 C 1.38212 * 109.75973 * 17.18747 * 22 21 20 28 28 N 1.31213 * 108.05485 * 0.24782 * 13 12 11 29 29 H 0.96996 * 119.99774 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.47277 * 60.00015 * 9 7 2 31 31 H 1.09003 * 109.46984 * 300.00346 * 9 7 2 32 32 H 1.08003 * 126.06919 * 359.95971 * 11 10 9 33 33 H 1.08004 * 126.06992 * 179.97438 * 12 11 10 34 34 H 0.97004 * 120.00188 * 180.02562 * 14 13 12 35 35 H 0.97005 * 119.99846 * 359.72693 * 17 15 14 36 36 H 1.09001 * 110.82032 * 263.49725 * 20 18 17 37 37 H 1.09000 * 110.82353 * 27.04262 * 20 18 17 38 38 H 1.09007 * 110.30032 * 214.72363 * 21 20 18 39 39 H 1.09005 * 110.38295 * 92.62196 * 21 20 18 40 40 H 1.07998 * 119.89943 * 0.02562 * 23 22 21 41 41 H 1.07996 * 120.03601 * 179.97438 * 24 23 22 42 42 H 1.08008 * 120.02762 * 180.02562 * 25 24 23 43 43 H 1.08000 * 119.89301 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2030 -3.6126 0.0018 11 6 2.2414 -4.6220 0.8969 12 6 3.2606 -5.4421 0.5539 13 6 3.8695 -4.9148 -0.5960 14 7 4.9668 -5.4654 -1.2730 15 6 5.5321 -6.6042 -0.8259 16 8 5.0935 -7.1514 0.1674 17 7 6.5866 -7.1339 -1.4770 18 6 7.2048 -8.3686 -0.9876 19 1 6.4455 -9.0340 -0.5769 20 6 7.9751 -9.0699 -2.1266 21 6 9.1776 -9.6876 -1.3818 22 6 9.3829 -8.8108 -0.1651 23 6 10.4753 -8.6860 0.6770 24 6 10.4350 -7.8076 1.7420 25 6 9.3012 -7.0496 1.9686 26 6 8.2110 -7.1726 1.1298 27 6 8.2495 -8.0530 0.0613 28 7 3.2359 -3.8133 -0.9230 29 1 -0.4849 0.8400 -0.0004 30 1 0.6248 -2.5571 -0.8897 31 1 0.6240 -2.5566 0.8903 32 1 1.5768 -4.7512 1.7384 33 1 3.5541 -6.3428 1.0725 34 1 5.3196 -5.0263 -2.0627 35 1 6.9363 -6.6976 -2.2697 36 1 7.3640 -9.8462 -2.5870 37 1 8.3099 -8.3468 -2.8704 38 1 10.0646 -9.6695 -2.0151 39 1 8.9515 -10.7096 -1.0777 40 1 11.3615 -9.2774 0.5005 41 1 11.2884 -7.7129 2.3972 42 1 9.2682 -6.3619 2.8007 43 1 7.3255 -6.5804 1.3077 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000266405436.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:05 Heat of formation + Delta-G solvation = 62.550244 kcal Electronic energy + Delta-G solvation = -26241.732869 eV Core-core repulsion = 22480.789188 eV Total energy + Delta-G solvation = -3760.943681 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.26708 -41.48434 -40.33545 -37.18330 -36.15318 -35.30066 -34.58358 -32.72973 -31.72808 -30.92498 -29.85110 -28.65161 -27.45675 -25.02720 -23.63411 -23.30043 -22.11802 -21.94294 -21.52465 -21.15295 -19.19779 -18.69968 -18.26939 -17.58636 -17.30008 -16.70029 -16.52577 -16.11007 -15.98274 -15.93594 -15.57773 -15.44107 -14.76302 -14.43920 -14.31145 -14.12688 -13.88041 -13.80117 -13.64587 -13.59175 -12.95208 -12.75608 -12.71815 -12.62375 -12.32950 -12.30040 -12.05515 -11.85398 -11.76215 -11.63691 -11.38666 -11.12030 -10.72746 -10.25306 -9.74026 -9.72685 -9.48370 -9.06041 -8.33395 -6.47469 0.37910 0.46881 1.07461 1.16522 1.36546 1.37877 1.51202 1.70134 2.12320 2.35531 2.40637 2.83981 2.98014 3.16291 3.42324 3.64970 3.96166 4.07914 4.14160 4.17482 4.23787 4.27905 4.34090 4.60296 4.66444 4.75924 4.79495 4.88993 4.93018 4.94611 5.01091 5.02879 5.10873 5.16660 5.22160 5.24711 5.46833 5.56323 5.58014 5.62560 5.71396 5.76603 5.87972 5.97417 6.10850 6.29063 6.63573 6.76224 7.14702 7.22495 7.43599 8.74314 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.019482 B = 0.002386 C = 0.002272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.855365 B =11731.660135 C =12318.322952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.018 3.982 3 Si 0.972 3.028 4 H -0.275 1.275 5 H -0.272 1.272 6 H -0.270 1.270 7 C -0.546 4.546 8 H 0.051 0.949 9 C 0.273 3.727 10 N -0.345 5.345 11 C 0.056 3.944 12 C -0.292 4.292 13 C 0.285 3.715 14 N -0.637 5.637 15 C 0.712 3.288 16 O -0.597 6.597 17 N -0.715 5.715 18 C 0.200 3.800 19 H 0.087 0.913 20 C -0.113 4.113 21 C -0.074 4.074 22 C -0.096 4.096 23 C -0.115 4.115 24 C -0.118 4.118 25 C -0.140 4.140 26 C -0.110 4.110 27 C -0.129 4.129 28 N -0.347 5.347 29 H 0.273 0.727 30 H 0.022 0.978 31 H 0.058 0.942 32 H 0.200 0.800 33 H 0.166 0.834 34 H 0.420 0.580 35 H 0.414 0.586 36 H 0.105 0.895 37 H 0.097 0.903 38 H 0.101 0.899 39 H 0.097 0.903 40 H 0.148 0.852 41 H 0.146 0.854 42 H 0.126 0.874 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.620 -20.726 -3.342 30.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.182 4.182 3 Si 0.796 3.204 4 H -0.200 1.200 5 H -0.198 1.198 6 H -0.195 1.195 7 C -0.584 4.584 8 H 0.069 0.931 9 C 0.154 3.846 10 N -0.127 5.127 11 C -0.093 4.093 12 C -0.323 4.323 13 C 0.029 3.971 14 N -0.289 5.289 15 C 0.411 3.589 16 O -0.475 6.475 17 N -0.371 5.371 18 C 0.095 3.905 19 H 0.105 0.895 20 C -0.151 4.151 21 C -0.112 4.112 22 C -0.097 4.097 23 C -0.133 4.133 24 C -0.136 4.136 25 C -0.158 4.158 26 C -0.129 4.129 27 C -0.130 4.130 28 N -0.178 5.178 29 H 0.082 0.918 30 H 0.040 0.960 31 H 0.076 0.924 32 H 0.217 0.783 33 H 0.183 0.817 34 H 0.257 0.743 35 H 0.251 0.749 36 H 0.123 0.877 37 H 0.115 0.885 38 H 0.120 0.880 39 H 0.115 0.885 40 H 0.165 0.835 41 H 0.164 0.836 42 H 0.144 0.856 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 20.918 -20.073 -3.295 29.178 hybrid contribution 0.067 1.139 0.242 1.166 sum 20.985 -18.935 -3.054 28.430 Atomic orbital electron populations 1.70002 1.07184 1.28702 1.50056 1.25745 0.95858 1.02724 0.93920 0.85295 0.78357 0.78384 0.78343 1.19995 1.19757 1.19482 1.21420 0.93331 0.90994 1.52666 0.93063 1.19336 0.85673 0.81504 0.98103 1.48820 1.23733 1.20366 1.19824 1.23144 1.00483 0.88964 0.96688 1.21665 1.02110 1.06654 1.01898 1.19080 0.90869 0.92933 0.94169 1.41407 1.30383 1.25427 1.31679 1.15835 0.80555 0.79674 0.82822 1.90842 1.65876 1.63052 1.27684 1.45022 1.31708 1.28185 1.32161 1.20552 0.92557 0.84189 0.93191 0.89508 1.22649 0.96058 1.00641 0.95777 1.21093 0.99231 0.98247 0.92584 1.20901 0.93200 0.97511 0.98090 1.20959 0.98574 0.99182 0.94566 1.21374 0.98127 0.95957 0.98135 1.21266 0.93917 1.00835 0.99825 1.20712 0.98178 0.98727 0.95274 1.21048 0.97086 0.97934 0.96923 1.77246 1.04854 1.17928 1.17822 0.91829 0.96014 0.92389 0.78295 0.81707 0.74301 0.74860 0.87661 0.88488 0.88049 0.88506 0.83471 0.83634 0.85647 0.89115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.62 13.29 21.45 0.28 -52.33 16 2 C 0.02 0.99 5.46 84.65 0.46 1.46 16 3 Si 0.97 44.10 29.54 68.60 2.03 46.12 16 4 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 5 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 6 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 7 C -0.55 -31.27 9.23 25.60 0.24 -31.03 16 8 H 0.05 3.06 7.81 -2.92 -0.02 3.04 16 9 C 0.27 14.39 6.26 85.63 0.54 14.93 16 10 N -0.35 -16.64 3.67 -351.85 -1.29 -17.93 16 11 C 0.06 2.27 11.43 83.52 0.96 3.23 16 12 C -0.29 -11.90 9.61 22.10 0.21 -11.69 16 13 C 0.29 11.75 8.11 133.31 1.08 12.83 16 14 N -0.64 -19.94 5.46 -321.23 -1.75 -21.70 16 15 C 0.71 20.81 7.99 179.05 1.43 22.24 16 16 O -0.60 -21.63 12.61 -3.99 -0.05 -21.68 16 17 N -0.71 -13.92 5.12 -458.18 -2.34 -16.27 16 18 C 0.20 3.59 3.17 44.92 0.14 3.73 16 19 H 0.09 1.90 7.64 -2.39 -0.02 1.89 16 20 C -0.11 -0.99 6.75 31.51 0.21 -0.78 16 21 C -0.07 -0.63 6.77 30.52 0.21 -0.43 16 22 C -0.10 -1.52 6.14 -19.60 -0.12 -1.64 16 23 C -0.12 -1.69 10.04 22.30 0.22 -1.46 16 24 C -0.12 -1.97 10.05 22.24 0.22 -1.75 16 25 C -0.14 -3.06 10.05 22.24 0.22 -2.84 16 26 C -0.11 -2.86 9.87 22.30 0.22 -2.64 16 27 C -0.13 -2.73 5.78 -19.59 -0.11 -2.84 16 28 N -0.35 -16.54 12.42 -54.44 -0.68 -17.21 16 29 H 0.27 14.51 8.31 -92.71 -0.77 13.74 16 30 H 0.02 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.06 2.99 8.07 -2.39 -0.02 2.97 16 32 H 0.20 6.48 8.06 -2.91 -0.02 6.45 16 33 H 0.17 6.60 5.91 -2.91 -0.02 6.59 16 34 H 0.42 10.50 8.84 -92.71 -0.82 9.68 16 35 H 0.41 5.34 8.40 -92.70 -0.78 4.56 16 36 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.10 0.57 7.80 -2.39 -0.02 0.56 16 38 H 0.10 0.48 8.14 -2.38 -0.02 0.46 16 39 H 0.10 0.64 8.14 -2.38 -0.02 0.62 16 40 H 0.15 1.28 8.06 -2.91 -0.02 1.26 16 41 H 0.15 1.65 8.06 -2.91 -0.02 1.63 16 42 H 0.13 2.48 8.06 -2.91 -0.02 2.46 16 43 H 0.09 2.87 7.08 -2.91 -0.02 2.85 16 Total: -1.00 -74.93 364.78 1.79 -73.13 By element: Atomic # 1 Polarization: 27.08 SS G_CDS: -0.54 Total: 26.55 kcal Atomic # 6 Polarization: -4.81 SS G_CDS: 6.13 Total: 1.32 kcal Atomic # 7 Polarization: -119.66 SS G_CDS: -5.78 Total: -125.43 kcal Atomic # 8 Polarization: -21.63 SS G_CDS: -0.05 Total: -21.68 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.12 kcal Total: -74.93 1.79 -73.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266405436.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.682 kcal (2) G-P(sol) polarization free energy of solvation -74.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.131 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds