Wall clock time and date at job start Tue Mar 31 2020 15:02:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48503 * 109.46845 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.47399 * 119.99834 * 3 2 1 6 6 H 1.48498 * 109.47295 * 240.00440 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99398 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.46953 * 179.97438 * 9 7 2 11 11 C 1.34963 * 125.97936 * 124.70755 * 10 9 7 12 12 C 1.35241 * 107.86330 * 179.84029 * 11 10 9 13 13 C 1.40403 * 107.86320 * 0.42509 * 12 11 10 14 14 N 1.40194 * 125.97022 * 179.75851 * 13 12 11 15 15 C 1.34777 * 120.00098 * 359.97438 * 14 13 12 16 16 O 1.21591 * 120.00059 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99996 * 180.02562 * 15 14 13 18 18 C 1.46502 * 119.99970 * 180.02562 * 17 15 14 19 19 H 1.08994 * 110.27093 * 327.07379 * 18 17 15 20 20 C 1.54343 * 110.30164 * 204.99514 * 18 17 15 21 21 C 1.54342 * 102.39248 * 214.72455 * 20 18 17 22 22 C 1.51373 * 105.17119 * 26.35010 * 21 20 18 23 23 C 1.38497 * 130.39680 * 162.79306 * 22 21 20 24 24 C 1.38104 * 120.21847 * 180.02562 * 23 22 21 25 25 C 1.38253 * 119.93434 * 0.02562 * 24 23 22 26 26 C 1.38108 * 119.93034 * 359.97438 * 25 24 23 27 27 C 1.38213 * 109.75404 * 342.81558 * 22 21 20 28 28 N 1.31205 * 108.05465 * 359.74263 * 13 12 11 29 29 H 0.97000 * 119.99706 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46830 * 299.99601 * 9 7 2 31 31 H 1.08992 * 109.47799 * 59.99946 * 9 7 2 32 32 H 1.08006 * 126.06826 * 0.02562 * 11 10 9 33 33 H 1.08000 * 126.06831 * 180.16875 * 12 11 10 34 34 H 0.96996 * 120.00056 * 180.02562 * 14 13 12 35 35 H 0.96998 * 120.00385 * 359.97438 * 17 15 14 36 36 H 1.09000 * 110.82845 * 332.95308 * 20 18 17 37 37 H 1.09008 * 110.82161 * 96.30691 * 20 18 17 38 38 H 1.08999 * 110.30649 * 145.27043 * 21 20 18 39 39 H 1.09004 * 110.30473 * 267.32928 * 21 20 18 40 40 H 1.08007 * 119.89170 * 0.02618 * 23 22 21 41 41 H 1.07998 * 120.03479 * 179.97438 * 24 23 22 42 42 H 1.07994 * 120.03401 * 179.97438 * 25 24 23 43 43 H 1.08004 * 119.88759 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7464 0.0006 5 1 3.1030 1.6964 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 7 2.2030 -3.6127 -0.0027 11 6 2.2456 -4.6203 0.8942 12 6 3.2606 -5.4433 0.5458 13 6 3.8690 -4.9140 -0.6036 14 7 4.9650 -5.4643 -1.2828 15 6 5.5295 -6.6048 -0.8387 16 8 5.0879 -7.1566 0.1507 17 7 6.5835 -7.1336 -1.4914 18 6 7.1968 -8.3735 -1.0090 19 1 7.1332 -8.4284 0.0777 20 6 8.6693 -8.4550 -1.4642 21 6 8.8566 -9.9671 -1.7108 22 6 7.4745 -10.4887 -2.0411 23 6 7.0823 -11.6709 -2.6468 24 6 5.7424 -11.9371 -2.8490 25 6 4.7885 -11.0210 -2.4463 26 6 5.1776 -9.8416 -1.8421 27 6 6.5209 -9.5731 -1.6379 28 7 3.2322 -3.8145 -0.9311 29 1 -0.4850 -0.8401 -0.0004 30 1 0.6241 -2.5574 0.8881 31 1 0.6247 -2.5564 -0.8919 32 1 1.5843 -4.7483 1.7386 33 1 3.5539 -6.3451 1.0625 34 1 5.3175 -5.0240 -2.0718 35 1 6.9356 -6.6936 -2.2809 36 1 8.8225 -7.8905 -2.3839 37 1 9.3377 -8.1018 -0.6789 38 1 9.5335 -10.1327 -2.5489 39 1 9.2410 -10.4520 -0.8134 40 1 7.8269 -12.3869 -2.9621 41 1 5.4400 -12.8597 -3.3220 42 1 3.7403 -11.2274 -2.6040 43 1 4.4319 -9.1262 -1.5281 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000266405438.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:09 Heat of formation + Delta-G solvation = 80.143139 kcal Electronic energy + Delta-G solvation = -26202.462438 eV Core-core repulsion = 22442.281641 eV Total energy + Delta-G solvation = -3760.180796 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.00869 -40.43430 -39.26889 -36.41923 -34.77211 -33.90920 -33.49314 -31.26079 -30.58539 -29.34744 -29.22255 -27.03898 -26.01566 -23.20952 -22.99051 -22.07686 -21.29929 -20.91944 -20.49634 -19.83560 -18.08785 -17.17499 -17.07278 -16.59876 -16.15514 -15.48915 -15.37224 -15.19671 -14.89736 -14.46184 -14.05749 -13.97932 -13.77714 -13.45379 -13.28707 -13.09772 -12.96385 -12.43048 -12.28297 -12.13974 -12.06637 -11.81091 -11.64319 -11.34758 -11.15154 -11.08396 -10.80987 -10.45478 -10.16015 -10.13314 -9.73389 -9.34238 -9.01217 -8.97590 -8.81304 -8.57345 -8.16987 -7.46478 -6.57227 -4.31107 1.08351 1.18745 2.35871 2.59735 3.04783 3.38009 3.39660 3.47290 3.58044 3.61118 3.77625 3.99311 4.23398 4.29299 4.41957 4.60156 4.74033 4.79155 4.85037 4.93286 5.16391 5.25058 5.28534 5.37414 5.43738 5.44934 5.52493 5.66593 5.73589 5.76601 5.89459 6.13354 6.21211 6.26029 6.33251 6.43070 6.46147 6.48020 6.66471 6.77197 6.79292 6.97949 7.43283 7.64211 7.86081 7.90696 8.35611 8.55146 8.57279 8.64642 9.37021 10.80233 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.025773 B = 0.002250 C = 0.002141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.154789 B =12440.334620 C =13076.601675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.022 3.978 3 Si 1.077 2.923 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.285 1.285 7 C -0.607 4.607 8 H 0.063 0.937 9 C 0.250 3.750 10 N -0.319 5.319 11 C 0.050 3.950 12 C -0.283 4.283 13 C 0.278 3.722 14 N -0.644 5.644 15 C 0.713 3.287 16 O -0.565 6.565 17 N -0.736 5.736 18 C 0.204 3.796 19 H 0.108 0.892 20 C -0.125 4.125 21 C -0.079 4.079 22 C -0.096 4.096 23 C -0.113 4.113 24 C -0.117 4.117 25 C -0.124 4.124 26 C -0.083 4.083 27 C -0.109 4.109 28 N -0.305 5.305 29 H 0.267 0.733 30 H 0.046 0.954 31 H 0.034 0.966 32 H 0.167 0.833 33 H 0.162 0.838 34 H 0.407 0.593 35 H 0.398 0.602 36 H 0.080 0.920 37 H 0.087 0.913 38 H 0.078 0.922 39 H 0.084 0.916 40 H 0.119 0.881 41 H 0.122 0.878 42 H 0.123 0.877 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.881 -22.403 -5.236 28.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.182 4.182 3 Si 0.904 3.096 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.212 1.212 7 C -0.645 4.645 8 H 0.081 0.919 9 C 0.132 3.868 10 N -0.101 5.101 11 C -0.100 4.100 12 C -0.315 4.315 13 C 0.023 3.977 14 N -0.293 5.293 15 C 0.413 3.587 16 O -0.440 6.440 17 N -0.391 5.391 18 C 0.099 3.901 19 H 0.126 0.874 20 C -0.163 4.163 21 C -0.116 4.116 22 C -0.097 4.097 23 C -0.131 4.131 24 C -0.135 4.135 25 C -0.142 4.142 26 C -0.101 4.101 27 C -0.110 4.110 28 N -0.136 5.136 29 H 0.077 0.923 30 H 0.064 0.936 31 H 0.052 0.948 32 H 0.184 0.816 33 H 0.180 0.820 34 H 0.241 0.759 35 H 0.232 0.768 36 H 0.099 0.901 37 H 0.106 0.894 38 H 0.097 0.903 39 H 0.103 0.897 40 H 0.137 0.863 41 H 0.140 0.860 42 H 0.141 0.859 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 16.112 -20.183 -5.129 26.330 hybrid contribution 0.385 -1.940 -0.263 1.995 sum 16.497 -22.123 -5.392 28.119 Atomic orbital electron populations 1.70851 1.06769 1.30420 1.46006 1.25925 0.96329 1.02811 0.93184 0.83419 0.74802 0.74575 0.76822 1.20535 1.21244 1.21160 1.22104 0.95362 0.90452 1.56598 0.91870 1.19743 0.86314 0.82841 0.97939 1.48757 1.23314 1.19631 1.18401 1.22557 1.00525 0.90226 0.96684 1.21521 1.01979 1.06317 1.01649 1.18783 0.90666 0.93911 0.94304 1.41397 1.31418 1.25086 1.31438 1.15661 0.80131 0.80014 0.82939 1.90874 1.64116 1.62379 1.26673 1.45121 1.33956 1.27319 1.32753 1.20347 0.90320 0.79718 0.99735 0.87435 1.22614 0.94633 0.96482 1.02557 1.21002 0.93849 0.94516 1.02264 1.20498 0.95735 0.94865 0.98553 1.20566 0.95976 0.96341 1.00216 1.21056 0.92841 0.99374 1.00195 1.21106 0.99644 0.94142 0.99270 1.20746 0.95137 0.96938 0.97305 1.20879 0.93652 0.96844 0.99647 1.77340 1.03635 1.16273 1.16354 0.92279 0.93640 0.94839 0.81576 0.82023 0.75854 0.76779 0.90120 0.89428 0.90305 0.89731 0.86337 0.85984 0.85920 0.86005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.47 13.65 55.43 0.76 -25.71 16 2 C 0.02 0.62 5.46 -17.82 -0.10 0.52 16 3 Si 1.08 25.02 29.90 -169.99 -5.08 19.93 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 6 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.61 -17.18 9.24 -34.44 -0.32 -17.50 16 8 H 0.06 1.87 7.81 -52.49 -0.41 1.46 16 9 C 0.25 6.38 5.57 -5.19 -0.03 6.35 16 10 N -0.32 -7.55 3.67 -62.56 -0.23 -7.78 16 11 C 0.05 1.01 11.44 -17.24 -0.20 0.81 16 12 C -0.28 -5.70 9.61 -39.83 -0.38 -6.08 16 13 C 0.28 5.63 8.11 -154.37 -1.25 4.38 16 14 N -0.64 -9.99 5.46 -15.51 -0.08 -10.08 16 15 C 0.71 10.31 8.25 -86.92 -0.72 9.60 16 16 O -0.57 -9.95 12.91 5.29 0.07 -9.89 16 17 N -0.74 -7.40 5.09 -58.79 -0.30 -7.70 16 18 C 0.20 1.92 3.21 -68.05 -0.22 1.70 16 19 H 0.11 1.19 7.56 -51.93 -0.39 0.80 16 20 C -0.12 -0.75 6.76 -25.32 -0.17 -0.92 16 21 C -0.08 -0.47 6.77 -26.85 -0.18 -0.65 16 22 C -0.10 -0.84 6.14 -104.21 -0.64 -1.48 16 23 C -0.11 -0.94 10.04 -39.54 -0.40 -1.34 16 24 C -0.12 -1.01 10.05 -39.62 -0.40 -1.40 16 25 C -0.12 -1.24 10.05 -39.62 -0.40 -1.64 16 26 C -0.08 -0.98 10.00 -39.53 -0.40 -1.37 16 27 C -0.11 -1.14 5.79 -104.21 -0.60 -1.74 16 28 N -0.31 -7.13 12.42 31.44 0.39 -6.74 16 29 H 0.27 7.64 7.22 -40.82 -0.29 7.34 16 30 H 0.05 1.12 7.94 -51.93 -0.41 0.71 16 31 H 0.03 0.89 8.01 -51.93 -0.42 0.47 16 32 H 0.17 2.76 8.06 -52.48 -0.42 2.34 16 33 H 0.16 3.18 5.91 -52.49 -0.31 2.87 16 34 H 0.41 5.13 8.84 -40.82 -0.36 4.77 16 35 H 0.40 2.89 8.43 -40.82 -0.34 2.55 16 36 H 0.08 0.40 7.82 -51.93 -0.41 0.00 16 37 H 0.09 0.43 8.14 -51.92 -0.42 0.01 16 38 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.12 0.72 8.06 -52.48 -0.42 0.30 16 41 H 0.12 0.78 8.06 -52.49 -0.42 0.35 16 42 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 43 H 0.12 1.65 7.56 -52.48 -0.40 1.26 16 LS Contribution 364.64 15.07 5.50 5.50 Total: -1.00 -34.56 364.64 -10.88 -45.44 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: -5.50 Total: 7.78 kcal Atomic # 6 Polarization: -4.37 SS G_CDS: -6.40 Total: -10.76 kcal Atomic # 7 Polarization: -58.54 SS G_CDS: 0.53 Total: -58.01 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: 0.07 Total: -9.89 kcal Atomic # 14 Polarization: 25.02 SS G_CDS: -5.08 Total: 19.93 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.56 -10.88 -45.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266405438.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.585 kcal (2) G-P(sol) polarization free energy of solvation -34.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.442 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds