Wall clock time and date at job start Tue Mar 31 2020 15:02:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48503 * 109.46845 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.47399 * 119.99834 * 3 2 1 6 6 H 1.48498 * 109.47295 * 240.00440 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99398 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.46953 * 179.97438 * 9 7 2 11 11 C 1.34963 * 125.97936 * 124.70755 * 10 9 7 12 12 C 1.35241 * 107.86330 * 179.84029 * 11 10 9 13 13 C 1.40403 * 107.86320 * 0.42509 * 12 11 10 14 14 N 1.40194 * 125.97022 * 179.75851 * 13 12 11 15 15 C 1.34777 * 120.00098 * 359.97438 * 14 13 12 16 16 O 1.21591 * 120.00059 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99996 * 180.02562 * 15 14 13 18 18 C 1.46502 * 119.99970 * 180.02562 * 17 15 14 19 19 H 1.08994 * 110.27093 * 327.07379 * 18 17 15 20 20 C 1.54343 * 110.30164 * 204.99514 * 18 17 15 21 21 C 1.54342 * 102.39248 * 214.72455 * 20 18 17 22 22 C 1.51373 * 105.17119 * 26.35010 * 21 20 18 23 23 C 1.38497 * 130.39680 * 162.79306 * 22 21 20 24 24 C 1.38104 * 120.21847 * 180.02562 * 23 22 21 25 25 C 1.38253 * 119.93434 * 0.02562 * 24 23 22 26 26 C 1.38108 * 119.93034 * 359.97438 * 25 24 23 27 27 C 1.38213 * 109.75404 * 342.81558 * 22 21 20 28 28 N 1.31205 * 108.05465 * 359.74263 * 13 12 11 29 29 H 0.97000 * 119.99706 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46830 * 299.99601 * 9 7 2 31 31 H 1.08992 * 109.47799 * 59.99946 * 9 7 2 32 32 H 1.08006 * 126.06826 * 0.02562 * 11 10 9 33 33 H 1.08000 * 126.06831 * 180.16875 * 12 11 10 34 34 H 0.96996 * 120.00056 * 180.02562 * 14 13 12 35 35 H 0.96998 * 120.00385 * 359.97438 * 17 15 14 36 36 H 1.09000 * 110.82845 * 332.95308 * 20 18 17 37 37 H 1.09008 * 110.82161 * 96.30691 * 20 18 17 38 38 H 1.08999 * 110.30649 * 145.27043 * 21 20 18 39 39 H 1.09004 * 110.30473 * 267.32928 * 21 20 18 40 40 H 1.08007 * 119.89170 * 0.02618 * 23 22 21 41 41 H 1.07998 * 120.03479 * 179.97438 * 24 23 22 42 42 H 1.07994 * 120.03401 * 179.97438 * 25 24 23 43 43 H 1.08004 * 119.88759 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7464 0.0006 5 1 3.1030 1.6964 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 7 2.2030 -3.6127 -0.0027 11 6 2.2456 -4.6203 0.8942 12 6 3.2606 -5.4433 0.5458 13 6 3.8690 -4.9140 -0.6036 14 7 4.9650 -5.4643 -1.2828 15 6 5.5295 -6.6048 -0.8387 16 8 5.0879 -7.1566 0.1507 17 7 6.5835 -7.1336 -1.4914 18 6 7.1968 -8.3735 -1.0090 19 1 7.1332 -8.4284 0.0777 20 6 8.6693 -8.4550 -1.4642 21 6 8.8566 -9.9671 -1.7108 22 6 7.4745 -10.4887 -2.0411 23 6 7.0823 -11.6709 -2.6468 24 6 5.7424 -11.9371 -2.8490 25 6 4.7885 -11.0210 -2.4463 26 6 5.1776 -9.8416 -1.8421 27 6 6.5209 -9.5731 -1.6379 28 7 3.2322 -3.8145 -0.9311 29 1 -0.4850 -0.8401 -0.0004 30 1 0.6241 -2.5574 0.8881 31 1 0.6247 -2.5564 -0.8919 32 1 1.5843 -4.7483 1.7386 33 1 3.5539 -6.3451 1.0625 34 1 5.3175 -5.0240 -2.0718 35 1 6.9356 -6.6936 -2.2809 36 1 8.8225 -7.8905 -2.3839 37 1 9.3377 -8.1018 -0.6789 38 1 9.5335 -10.1327 -2.5489 39 1 9.2410 -10.4520 -0.8134 40 1 7.8269 -12.3869 -2.9621 41 1 5.4400 -12.8597 -3.3220 42 1 3.7403 -11.2274 -2.6040 43 1 4.4319 -9.1262 -1.5281 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000266405438.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:08 Heat of formation + Delta-G solvation = 58.959105 kcal Electronic energy + Delta-G solvation = -26203.381046 eV Core-core repulsion = 22442.281641 eV Total energy + Delta-G solvation = -3761.099405 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.35142 -41.52645 -40.38765 -37.21796 -36.34975 -35.53673 -34.63072 -32.66352 -31.72850 -31.01101 -29.86429 -28.34850 -27.40046 -25.12862 -23.64844 -23.37656 -22.26566 -21.97724 -21.58540 -21.23222 -19.33542 -19.18157 -18.35075 -17.53752 -17.31737 -16.61095 -16.49353 -16.07538 -15.95876 -15.79724 -15.65090 -15.49541 -15.03310 -14.68590 -14.28648 -14.10964 -13.92990 -13.85446 -13.69539 -13.60921 -13.23465 -12.76902 -12.65936 -12.60884 -12.32508 -12.03034 -11.95539 -11.88125 -11.77795 -11.68674 -11.18771 -11.01077 -10.69744 -10.29249 -9.82586 -9.75045 -9.49818 -9.16369 -8.77436 -6.56112 0.36121 0.45322 0.97727 1.09031 1.50727 1.57386 1.62606 1.78889 2.02646 2.33967 2.48559 2.82127 3.00753 3.10959 3.40189 3.62972 3.85145 4.05463 4.12074 4.13421 4.15668 4.22202 4.32388 4.55761 4.57369 4.63323 4.71613 4.76765 4.77695 4.84867 4.90800 5.00271 5.05305 5.14793 5.18977 5.22092 5.43593 5.53720 5.56558 5.60742 5.69791 5.78465 5.84241 5.94473 6.09164 6.26569 6.41223 6.67116 7.06361 7.19726 7.38598 8.57927 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.025773 B = 0.002250 C = 0.002141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.154789 B =12440.334620 C =13076.601675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.020 4.020 3 Si 1.120 2.880 4 H -0.275 1.275 5 H -0.271 1.271 6 H -0.275 1.275 7 C -0.621 4.621 8 H 0.045 0.955 9 C 0.260 3.740 10 N -0.345 5.345 11 C 0.055 3.945 12 C -0.289 4.289 13 C 0.288 3.712 14 N -0.637 5.637 15 C 0.712 3.288 16 O -0.598 6.598 17 N -0.714 5.714 18 C 0.199 3.801 19 H 0.087 0.913 20 C -0.115 4.115 21 C -0.075 4.075 22 C -0.096 4.096 23 C -0.115 4.115 24 C -0.118 4.118 25 C -0.139 4.139 26 C -0.110 4.110 27 C -0.129 4.129 28 N -0.347 5.347 29 H 0.260 0.740 30 H 0.054 0.946 31 H 0.016 0.984 32 H 0.201 0.799 33 H 0.168 0.832 34 H 0.420 0.580 35 H 0.414 0.586 36 H 0.096 0.904 37 H 0.103 0.897 38 H 0.101 0.899 39 H 0.096 0.904 40 H 0.147 0.853 41 H 0.147 0.853 42 H 0.128 0.872 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.759 -23.603 -5.833 31.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.220 4.220 3 Si 0.941 3.059 4 H -0.200 1.200 5 H -0.196 1.196 6 H -0.200 1.200 7 C -0.659 4.659 8 H 0.064 0.936 9 C 0.141 3.859 10 N -0.127 5.127 11 C -0.093 4.093 12 C -0.320 4.320 13 C 0.032 3.968 14 N -0.289 5.289 15 C 0.412 3.588 16 O -0.475 6.475 17 N -0.370 5.370 18 C 0.094 3.906 19 H 0.105 0.895 20 C -0.153 4.153 21 C -0.112 4.112 22 C -0.097 4.097 23 C -0.132 4.132 24 C -0.135 4.135 25 C -0.157 4.157 26 C -0.129 4.129 27 C -0.130 4.130 28 N -0.178 5.178 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.034 0.966 32 H 0.218 0.782 33 H 0.185 0.815 34 H 0.258 0.742 35 H 0.252 0.748 36 H 0.115 0.885 37 H 0.121 0.879 38 H 0.120 0.880 39 H 0.114 0.886 40 H 0.165 0.835 41 H 0.164 0.836 42 H 0.146 0.854 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 19.038 -21.428 -5.764 29.237 hybrid contribution -0.457 -1.777 -0.096 1.837 sum 18.581 -23.205 -5.860 30.299 Atomic orbital electron populations 1.70947 1.07449 1.30150 1.47361 1.27304 0.96456 1.06120 0.92086 0.82875 0.74136 0.71058 0.77825 1.19982 1.19634 1.20001 1.22282 0.94667 0.92093 1.56818 0.93650 1.19414 0.86415 0.82811 0.97306 1.48552 1.23997 1.20263 1.19860 1.23160 1.00652 0.88871 0.96654 1.21690 1.02071 1.06456 1.01809 1.19082 0.90837 0.92803 0.94083 1.41411 1.30349 1.25449 1.31659 1.15829 0.80706 0.79468 0.82823 1.90842 1.65251 1.63092 1.28335 1.45014 1.32167 1.27216 1.32558 1.20556 0.92527 0.78804 0.98699 0.89488 1.22651 0.91776 0.97103 1.03723 1.21084 0.92445 0.93995 1.03639 1.20885 0.96784 0.94488 0.97504 1.20963 0.96418 0.96612 0.99250 1.21379 0.92894 0.99727 0.99542 1.21265 1.00568 0.94151 0.99670 1.20688 0.95409 0.97450 0.99338 1.21023 0.93510 0.97992 1.00464 1.77256 1.04804 1.18138 1.17575 0.93003 0.92864 0.96624 0.78245 0.81488 0.74241 0.74846 0.88513 0.87868 0.88032 0.88568 0.83502 0.83574 0.85450 0.89094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.44 13.65 21.45 0.29 -54.15 16 2 C -0.02 -1.14 5.46 84.66 0.46 -0.67 16 3 Si 1.12 50.02 29.90 68.60 2.05 52.07 16 4 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 5 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 6 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 7 C -0.62 -35.74 9.24 25.60 0.24 -35.50 16 8 H 0.05 2.73 7.81 -2.91 -0.02 2.71 16 9 C 0.26 13.61 5.57 85.63 0.48 14.09 16 10 N -0.34 -16.62 3.67 -351.84 -1.29 -17.91 16 11 C 0.05 2.23 11.44 83.52 0.96 3.18 16 12 C -0.29 -11.73 9.61 22.11 0.21 -11.51 16 13 C 0.29 11.83 8.11 133.31 1.08 12.92 16 14 N -0.64 -19.83 5.46 -321.23 -1.75 -21.58 16 15 C 0.71 20.69 8.25 179.05 1.48 22.17 16 16 O -0.60 -21.55 12.91 -4.00 -0.05 -21.60 16 17 N -0.71 -13.80 5.09 -458.19 -2.33 -16.14 16 18 C 0.20 3.55 3.21 44.91 0.14 3.70 16 19 H 0.09 1.93 7.56 -2.39 -0.02 1.91 16 20 C -0.11 -1.03 6.76 31.51 0.21 -0.82 16 21 C -0.07 -0.63 6.77 30.52 0.21 -0.42 16 22 C -0.10 -1.46 6.14 -19.59 -0.12 -1.58 16 23 C -0.11 -1.59 10.04 22.30 0.22 -1.37 16 24 C -0.12 -1.83 10.05 22.24 0.22 -1.61 16 25 C -0.14 -2.82 10.05 22.24 0.22 -2.59 16 26 C -0.11 -2.71 10.00 22.30 0.22 -2.48 16 27 C -0.13 -2.63 5.79 -19.60 -0.11 -2.74 16 28 N -0.35 -16.55 12.42 -54.44 -0.68 -17.23 16 29 H 0.26 15.21 7.22 -92.71 -0.67 14.54 16 30 H 0.05 2.68 7.94 -2.39 -0.02 2.66 16 31 H 0.02 0.87 8.01 -2.39 -0.02 0.85 16 32 H 0.20 6.45 8.06 -2.91 -0.02 6.42 16 33 H 0.17 6.64 5.91 -2.91 -0.02 6.62 16 34 H 0.42 10.46 8.84 -92.71 -0.82 9.64 16 35 H 0.41 5.32 8.43 -92.71 -0.78 4.54 16 36 H 0.10 0.59 7.82 -2.39 -0.02 0.57 16 37 H 0.10 0.66 8.14 -2.38 -0.02 0.64 16 38 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 39 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 40 H 0.15 1.19 8.06 -2.91 -0.02 1.16 16 41 H 0.15 1.49 8.06 -2.91 -0.02 1.47 16 42 H 0.13 2.29 8.06 -2.91 -0.02 2.26 16 43 H 0.09 2.71 7.56 -2.91 -0.02 2.69 16 Total: -1.00 -76.86 364.64 1.93 -74.93 By element: Atomic # 1 Polarization: 27.29 SS G_CDS: -0.44 Total: 26.85 kcal Atomic # 6 Polarization: -11.37 SS G_CDS: 6.13 Total: -5.25 kcal Atomic # 7 Polarization: -121.24 SS G_CDS: -5.76 Total: -127.00 kcal Atomic # 8 Polarization: -21.55 SS G_CDS: -0.05 Total: -21.60 kcal Atomic # 14 Polarization: 50.02 SS G_CDS: 2.05 Total: 52.07 kcal Total: -76.86 1.93 -74.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266405438.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.890 kcal (2) G-P(sol) polarization free energy of solvation -76.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.931 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds