Wall clock time and date at job start Tue Mar 31 2020 14:45:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42902 * 113.99858 * 2 1 4 4 C 1.53007 * 109.46937 * 180.02562 * 3 2 1 5 5 O 1.42902 * 109.46964 * 65.00044 * 4 3 2 6 6 C 1.36027 * 116.99894 * 179.97438 * 5 4 3 7 7 C 1.38645 * 119.99273 * 0.25862 * 6 5 4 8 8 C 1.38139 * 120.03866 * 180.25556 * 7 6 5 9 9 C 1.38839 * 120.02092 * 359.48814 * 8 7 6 10 10 N 1.40140 * 120.00568 * 180.23468 * 9 8 7 11 11 C 1.34782 * 120.00042 * 144.90554 * 10 9 8 12 12 O 1.21591 * 119.99689 * 4.62538 * 11 10 9 13 13 N 1.34778 * 120.00082 * 184.62046 * 11 10 9 14 14 C 1.46502 * 119.99858 * 180.02562 * 13 11 10 15 15 C 1.53000 * 109.46962 * 179.97438 * 14 13 11 16 16 C 1.50703 * 109.47139 * 179.97438 * 15 14 13 17 17 H 1.07999 * 119.99536 * 0.02562 * 16 15 14 18 18 C 1.37874 * 119.99911 * 179.97438 * 16 15 14 19 19 N 1.31518 * 120.00159 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99878 * 179.97438 * 18 16 15 21 21 H 1.48494 * 109.47047 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.46907 * 120.00540 * 20 18 16 23 23 H 1.48498 * 109.47189 * 240.00188 * 20 18 16 24 24 C 1.38817 * 119.98735 * 0.25344 * 9 8 7 25 25 C 1.38277 * 119.96202 * 0.02562 * 24 9 8 26 26 F 1.35107 * 120.01186 * 180.02562 * 25 24 9 27 27 H 1.08996 * 109.47124 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47104 * 299.99834 * 1 2 3 29 29 H 1.08995 * 109.47288 * 59.99499 * 1 2 3 30 30 H 1.08999 * 109.47318 * 60.00552 * 3 2 1 31 31 H 1.08998 * 109.47425 * 300.00163 * 3 2 1 32 32 H 1.09003 * 109.46976 * 305.00116 * 4 3 2 33 33 H 1.09000 * 109.46848 * 184.99935 * 4 3 2 34 34 H 1.08000 * 119.98456 * 359.97438 * 7 6 5 35 35 H 1.07993 * 119.98889 * 179.76593 * 8 7 6 36 36 H 0.96997 * 120.00318 * 324.90696 * 10 9 8 37 37 H 0.96994 * 119.99920 * 0.02562 * 13 11 10 38 38 H 1.08995 * 109.46999 * 300.00214 * 14 13 11 39 39 H 1.08996 * 109.46749 * 60.00312 * 14 13 11 40 40 H 1.09002 * 109.46953 * 300.00366 * 15 14 13 41 41 H 1.09003 * 109.46901 * 59.99723 * 15 14 13 42 42 H 0.96999 * 120.00326 * 179.97438 * 19 18 16 43 43 H 1.08004 * 120.02240 * 179.97438 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 8 3.9648 0.5797 -1.2220 6 6 5.3032 0.3986 -1.3844 7 6 6.1818 0.7906 -0.3860 8 6 7.5415 0.6120 -0.5521 9 6 8.0287 0.0300 -1.7146 10 7 9.4078 -0.1555 -1.8807 11 6 9.8679 -1.2403 -2.5350 12 8 9.0865 -2.0140 -3.0539 13 7 11.1941 -1.4674 -2.6142 14 6 11.6941 -2.6463 -3.3258 15 6 13.2229 -2.6668 -3.2674 16 6 13.7373 -3.8798 -3.9990 17 1 13.0432 -4.5670 -4.4598 18 6 15.0940 -4.1116 -4.0807 19 7 15.9391 -3.2744 -3.5199 20 14 15.7316 -5.6155 -4.9869 21 1 14.5857 -6.3927 -5.5237 22 1 16.6054 -5.1846 -6.1076 23 1 16.5106 -6.4645 -4.0501 24 6 7.1496 -0.3677 -2.7126 25 6 5.7891 -0.1834 -2.5482 26 9 4.9325 -0.5706 -3.5186 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.6887 1.8464 0.8900 31 1 1.6886 1.8464 -0.8899 32 1 3.8515 0.5682 0.8409 33 1 3.9785 2.1765 0.0889 34 1 5.8033 1.2399 0.5202 35 1 8.2253 0.9210 0.2245 36 1 10.0313 0.4967 -1.5248 37 1 11.8173 -0.8504 -2.2000 38 1 11.3001 -3.5479 -2.8571 39 1 11.3712 -2.6067 -4.3661 40 1 13.6165 -1.7651 -3.7364 41 1 13.5462 -2.7060 -2.2272 42 1 16.8936 -3.4376 -3.5771 43 1 7.5280 -0.8201 -3.6174 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273184479.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:46 Heat of formation + Delta-G solvation = -131.897073 kcal Electronic energy + Delta-G solvation = -26239.870606 eV Core-core repulsion = 22007.433080 eV Total energy + Delta-G solvation = -4232.437526 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.147 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -48.75144 -40.66619 -39.80279 -38.33031 -37.43801 -35.00381 -34.28264 -32.86691 -31.33352 -30.73958 -29.81187 -28.24082 -26.78180 -24.88049 -24.21021 -22.58858 -22.37390 -21.03462 -20.67596 -18.74322 -18.42780 -17.83917 -17.29117 -16.67940 -16.38643 -16.16750 -15.91300 -15.78753 -15.47517 -15.28007 -14.98617 -14.75242 -14.54140 -14.39075 -13.95345 -13.65804 -13.39718 -13.07067 -13.00338 -12.68088 -12.40120 -12.30601 -12.08798 -11.79850 -11.52863 -11.28950 -11.22150 -11.06787 -10.63708 -10.40278 -10.17176 -10.06754 -9.89791 -9.61674 -9.28498 -8.96572 -8.62718 -8.41155 -7.82439 -6.11607 -4.14319 0.98806 1.09177 2.68939 2.84164 3.20000 3.26389 3.27839 3.35673 3.41165 3.59292 4.09843 4.34100 4.35123 4.48363 4.58789 4.61330 4.72852 4.80350 4.86863 4.93179 4.94656 5.00195 5.17565 5.25913 5.27488 5.36570 5.59469 5.75881 5.90149 5.99456 6.24429 6.31178 6.33177 6.64011 6.70287 6.72685 6.84564 7.03891 7.12231 7.51384 7.58356 7.87157 8.14362 8.28175 8.74902 8.92069 9.50861 11.00027 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.033239 B = 0.001759 C = 0.001712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.190177 B =15915.596987 C =16346.557727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.384 6.384 3 C 0.062 3.938 4 C 0.060 3.940 5 O -0.301 6.301 6 C 0.075 3.925 7 C -0.164 4.164 8 C -0.121 4.121 9 C 0.169 3.831 10 N -0.690 5.690 11 C 0.696 3.304 12 O -0.579 6.579 13 N -0.730 5.730 14 C 0.138 3.862 15 C 0.012 3.988 16 C -0.521 4.521 17 H 0.061 0.939 18 C 0.059 3.941 19 N -0.894 5.894 20 Si 0.897 3.103 21 H -0.271 1.271 22 H -0.283 1.283 23 H -0.283 1.283 24 C -0.119 4.119 25 C 0.091 3.909 26 F -0.130 7.130 27 H 0.088 0.912 28 H 0.041 0.959 29 H 0.043 0.957 30 H 0.072 0.928 31 H 0.062 0.938 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.139 0.861 35 H 0.135 0.865 36 H 0.408 0.592 37 H 0.396 0.604 38 H 0.057 0.943 39 H 0.057 0.943 40 H 0.023 0.977 41 H 0.023 0.977 42 H 0.261 0.739 43 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.323 15.493 11.056 31.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.302 6.302 3 C -0.014 4.014 4 C -0.015 4.015 5 O -0.215 6.215 6 C 0.028 3.972 7 C -0.183 4.183 8 C -0.142 4.142 9 C 0.073 3.927 10 N -0.338 5.338 11 C 0.396 3.604 12 O -0.456 6.456 13 N -0.383 5.383 14 C 0.016 3.984 15 C -0.025 4.025 16 C -0.560 4.560 17 H 0.079 0.921 18 C -0.143 4.143 19 N -0.533 5.533 20 Si 0.725 3.275 21 H -0.195 1.195 22 H -0.209 1.209 23 H -0.209 1.209 24 C -0.141 4.141 25 C 0.071 3.929 26 F -0.108 7.108 27 H 0.106 0.894 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.090 0.910 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.097 0.903 34 H 0.157 0.843 35 H 0.153 0.847 36 H 0.244 0.756 37 H 0.229 0.771 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.041 0.959 41 H 0.041 0.959 42 H 0.071 0.929 43 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -25.828 14.495 10.403 31.391 hybrid contribution 0.871 0.098 0.037 0.877 sum -24.957 14.594 10.439 30.738 Atomic orbital electron populations 1.22768 0.80730 1.03130 0.99930 1.87992 1.19903 1.26949 1.95397 1.22572 0.91493 0.85934 1.01440 1.22871 0.93849 0.98216 0.86611 1.86200 1.18979 1.77307 1.38990 1.18893 0.83511 1.00297 0.94490 1.20813 0.92884 1.05517 0.99090 1.20714 0.95057 1.02635 0.95794 1.17077 0.82804 0.99762 0.93105 1.42665 1.05085 1.25334 1.60760 1.16080 0.83663 0.81030 0.79582 1.90910 1.55366 1.48060 1.51262 1.45574 1.04009 1.29752 1.58977 1.21691 0.97533 0.84269 0.94951 1.19344 0.87011 0.98154 0.98032 1.21080 0.91877 1.08379 1.34635 0.92101 1.24992 0.96938 0.96791 0.95551 1.69962 1.02436 1.36540 1.44372 0.86449 0.78941 0.82673 0.79468 1.19542 1.20938 1.20935 1.21226 0.89839 1.01623 1.01370 1.16744 0.87187 1.03089 0.85889 1.91508 1.69415 1.89006 1.60907 0.89381 0.94073 0.93872 0.91024 0.91993 0.90882 0.90270 0.84346 0.84701 0.75638 0.77087 0.92440 0.92439 0.95874 0.95883 0.92896 0.82003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.30 16 2 O -0.38 -3.62 10.67 -40.08 -0.43 -4.04 16 3 C 0.06 0.41 6.32 37.16 0.23 0.64 16 4 C 0.06 0.44 5.12 37.16 0.19 0.63 16 5 O -0.30 -3.55 9.97 -24.67 -0.25 -3.80 16 6 C 0.07 0.91 6.69 -39.19 -0.26 0.64 16 7 C -0.16 -1.53 9.03 -39.47 -0.36 -1.88 16 8 C -0.12 -1.16 9.96 -39.40 -0.39 -1.55 16 9 C 0.17 2.12 6.30 -83.62 -0.53 1.60 16 10 N -0.69 -8.48 5.35 -14.19 -0.08 -8.55 16 11 C 0.70 11.64 8.41 -86.91 -0.73 10.90 16 12 O -0.58 -11.90 13.78 5.29 0.07 -11.83 16 13 N -0.73 -12.18 5.56 -65.22 -0.36 -12.55 16 14 C 0.14 2.87 5.61 -4.04 -0.02 2.84 16 15 C 0.01 0.29 5.09 -27.88 -0.14 0.15 16 16 C -0.52 -14.28 9.11 -34.44 -0.31 -14.60 16 17 H 0.06 1.64 7.74 -52.49 -0.41 1.24 16 18 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 19 N -0.89 -25.81 13.29 55.43 0.74 -25.07 16 20 Si 0.90 21.26 29.54 -169.99 -5.02 16.24 16 21 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 24 C -0.12 -1.75 8.67 -39.35 -0.34 -2.09 16 25 C 0.09 1.31 7.31 -39.32 -0.29 1.03 16 26 F -0.13 -2.05 17.11 2.25 0.04 -2.01 16 27 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.04 0.17 8.14 -51.93 -0.42 -0.25 16 29 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.49 7.65 -51.93 -0.40 0.09 16 33 H 0.08 0.36 7.67 -51.93 -0.40 -0.04 16 34 H 0.14 0.84 6.29 -52.49 -0.33 0.51 16 35 H 0.14 0.91 8.06 -52.49 -0.42 0.48 16 36 H 0.41 3.49 8.84 -40.82 -0.36 3.13 16 37 H 0.40 5.49 8.49 -40.82 -0.35 5.15 16 38 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 39 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 40 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 43 H 0.16 2.71 6.22 -52.48 -0.33 2.38 16 LS Contribution 373.21 15.07 5.62 5.62 Total: -1.00 -34.65 373.21 -7.52 -42.17 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -5.93 Total: 2.66 kcal Atomic # 6 Polarization: 3.08 SS G_CDS: -1.94 Total: 1.15 kcal Atomic # 7 Polarization: -46.47 SS G_CDS: 0.30 Total: -46.17 kcal Atomic # 8 Polarization: -19.07 SS G_CDS: -0.60 Total: -19.67 kcal Atomic # 9 Polarization: -2.05 SS G_CDS: 0.04 Total: -2.01 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -34.65 -7.52 -42.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273184479.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.723 kcal (2) G-P(sol) polarization free energy of solvation -34.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds