Wall clock time and date at job start Tue Mar 31 2020 14:45:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42902 * 113.99858 * 2 1 4 4 C 1.53007 * 109.46937 * 180.02562 * 3 2 1 5 5 O 1.42902 * 109.46964 * 65.00044 * 4 3 2 6 6 C 1.36027 * 116.99894 * 179.97438 * 5 4 3 7 7 C 1.38645 * 119.99273 * 0.25862 * 6 5 4 8 8 C 1.38139 * 120.03866 * 180.25556 * 7 6 5 9 9 C 1.38839 * 120.02092 * 359.48814 * 8 7 6 10 10 N 1.40140 * 120.00568 * 180.23468 * 9 8 7 11 11 C 1.34782 * 120.00042 * 144.90554 * 10 9 8 12 12 O 1.21591 * 119.99689 * 4.62538 * 11 10 9 13 13 N 1.34778 * 120.00082 * 184.62046 * 11 10 9 14 14 C 1.46502 * 119.99858 * 180.02562 * 13 11 10 15 15 C 1.53000 * 109.46962 * 179.97438 * 14 13 11 16 16 C 1.50703 * 109.47139 * 179.97438 * 15 14 13 17 17 H 1.07999 * 119.99536 * 0.02562 * 16 15 14 18 18 C 1.37874 * 119.99911 * 179.97438 * 16 15 14 19 19 N 1.31518 * 120.00159 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99878 * 179.97438 * 18 16 15 21 21 H 1.48494 * 109.47047 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.46907 * 120.00540 * 20 18 16 23 23 H 1.48498 * 109.47189 * 240.00188 * 20 18 16 24 24 C 1.38817 * 119.98735 * 0.25344 * 9 8 7 25 25 C 1.38277 * 119.96202 * 0.02562 * 24 9 8 26 26 F 1.35107 * 120.01186 * 180.02562 * 25 24 9 27 27 H 1.08996 * 109.47124 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47104 * 299.99834 * 1 2 3 29 29 H 1.08995 * 109.47288 * 59.99499 * 1 2 3 30 30 H 1.08999 * 109.47318 * 60.00552 * 3 2 1 31 31 H 1.08998 * 109.47425 * 300.00163 * 3 2 1 32 32 H 1.09003 * 109.46976 * 305.00116 * 4 3 2 33 33 H 1.09000 * 109.46848 * 184.99935 * 4 3 2 34 34 H 1.08000 * 119.98456 * 359.97438 * 7 6 5 35 35 H 1.07993 * 119.98889 * 179.76593 * 8 7 6 36 36 H 0.96997 * 120.00318 * 324.90696 * 10 9 8 37 37 H 0.96994 * 119.99920 * 0.02562 * 13 11 10 38 38 H 1.08995 * 109.46999 * 300.00214 * 14 13 11 39 39 H 1.08996 * 109.46749 * 60.00312 * 14 13 11 40 40 H 1.09002 * 109.46953 * 300.00366 * 15 14 13 41 41 H 1.09003 * 109.46901 * 59.99723 * 15 14 13 42 42 H 0.96999 * 120.00326 * 179.97438 * 19 18 16 43 43 H 1.08004 * 120.02240 * 179.97438 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 8 3.9648 0.5797 -1.2220 6 6 5.3032 0.3986 -1.3844 7 6 6.1818 0.7906 -0.3860 8 6 7.5415 0.6120 -0.5521 9 6 8.0287 0.0300 -1.7146 10 7 9.4078 -0.1555 -1.8807 11 6 9.8679 -1.2403 -2.5350 12 8 9.0865 -2.0140 -3.0539 13 7 11.1941 -1.4674 -2.6142 14 6 11.6941 -2.6463 -3.3258 15 6 13.2229 -2.6668 -3.2674 16 6 13.7373 -3.8798 -3.9990 17 1 13.0432 -4.5670 -4.4598 18 6 15.0940 -4.1116 -4.0807 19 7 15.9391 -3.2744 -3.5199 20 14 15.7316 -5.6155 -4.9869 21 1 14.5857 -6.3927 -5.5237 22 1 16.6054 -5.1846 -6.1076 23 1 16.5106 -6.4645 -4.0501 24 6 7.1496 -0.3677 -2.7126 25 6 5.7891 -0.1834 -2.5482 26 9 4.9325 -0.5706 -3.5186 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.6887 1.8464 0.8900 31 1 1.6886 1.8464 -0.8899 32 1 3.8515 0.5682 0.8409 33 1 3.9785 2.1765 0.0889 34 1 5.8033 1.2399 0.5202 35 1 8.2253 0.9210 0.2245 36 1 10.0313 0.4967 -1.5248 37 1 11.8173 -0.8504 -2.2000 38 1 11.3001 -3.5479 -2.8571 39 1 11.3712 -2.6067 -4.3661 40 1 13.6165 -1.7651 -3.7364 41 1 13.5462 -2.7060 -2.2272 42 1 16.8936 -3.4376 -3.5771 43 1 7.5280 -0.8201 -3.6174 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273184479.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:46 Heat of formation + Delta-G solvation = -156.996554 kcal Electronic energy + Delta-G solvation = -26240.959001 eV Core-core repulsion = 22007.433080 eV Total energy + Delta-G solvation = -4233.525921 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.147 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.86608 -41.76286 -40.77585 -39.07242 -38.28744 -36.62008 -35.45883 -34.78462 -32.03792 -31.78925 -31.29240 -29.31818 -27.28073 -26.68532 -25.02454 -23.69188 -23.26091 -22.68635 -21.90362 -19.78594 -19.47925 -18.88443 -18.43462 -17.86935 -17.61936 -16.99987 -16.89196 -16.68184 -16.60345 -16.47603 -16.11570 -15.88416 -15.81054 -15.55706 -15.26155 -15.04821 -14.54282 -14.28559 -14.03013 -13.59294 -13.56827 -13.20691 -13.13342 -12.96041 -12.79649 -12.51661 -12.48461 -12.24961 -12.21402 -11.91169 -11.66841 -11.48351 -11.22133 -10.93252 -10.66653 -10.60046 -10.07962 -9.91933 -8.78373 -8.23747 -6.33374 0.07303 0.15024 1.41400 1.42492 1.52436 1.57724 1.96763 2.09140 2.41515 2.58591 2.82020 3.09757 3.11512 3.32500 3.69215 3.90202 4.06020 4.10654 4.14373 4.35604 4.37181 4.45459 4.48829 4.51665 4.52060 4.55365 4.60951 4.76021 4.86319 4.86926 4.93232 5.07975 5.11874 5.24447 5.33040 5.50009 5.60448 5.73067 5.79025 5.95693 6.17568 6.18396 6.34303 6.79790 6.99786 7.35914 7.45573 8.88162 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.033239 B = 0.001759 C = 0.001712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.190177 B =15915.596987 C =16346.557727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.421 6.421 3 C 0.056 3.944 4 C 0.048 3.952 5 O -0.327 6.327 6 C 0.078 3.922 7 C -0.149 4.149 8 C -0.095 4.095 9 C 0.148 3.852 10 N -0.667 5.667 11 C 0.696 3.304 12 O -0.621 6.621 13 N -0.723 5.723 14 C 0.159 3.841 15 C 0.023 3.977 16 C -0.546 4.546 17 H 0.058 0.942 18 C 0.009 3.991 19 N -0.925 5.925 20 Si 0.963 3.037 21 H -0.267 1.267 22 H -0.277 1.277 23 H -0.277 1.277 24 C -0.138 4.138 25 C 0.054 3.946 26 F -0.150 7.150 27 H 0.087 0.913 28 H 0.061 0.939 29 H 0.046 0.954 30 H 0.106 0.894 31 H 0.059 0.941 32 H 0.082 0.918 33 H 0.114 0.886 34 H 0.183 0.817 35 H 0.178 0.822 36 H 0.429 0.571 37 H 0.411 0.589 38 H 0.045 0.955 39 H 0.045 0.955 40 H 0.012 0.988 41 H 0.012 0.988 42 H 0.266 0.734 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.713 17.073 13.544 33.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.341 6.341 3 C -0.020 4.020 4 C -0.026 4.026 5 O -0.241 6.241 6 C 0.031 3.969 7 C -0.168 4.168 8 C -0.115 4.115 9 C 0.052 3.948 10 N -0.318 5.318 11 C 0.397 3.603 12 O -0.501 6.501 13 N -0.377 5.377 14 C 0.035 3.965 15 C -0.015 4.015 16 C -0.585 4.585 17 H 0.076 0.924 18 C -0.190 4.190 19 N -0.564 5.564 20 Si 0.788 3.212 21 H -0.192 1.192 22 H -0.203 1.203 23 H -0.202 1.202 24 C -0.160 4.160 25 C 0.034 3.966 26 F -0.129 7.129 27 H 0.106 0.894 28 H 0.080 0.920 29 H 0.064 0.936 30 H 0.123 0.877 31 H 0.078 0.922 32 H 0.100 0.900 33 H 0.131 0.869 34 H 0.200 0.800 35 H 0.195 0.805 36 H 0.269 0.731 37 H 0.248 0.752 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.030 0.970 41 H 0.030 0.970 42 H 0.074 0.926 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -26.227 16.144 12.932 33.403 hybrid contribution 0.866 -0.301 -0.654 1.126 sum -25.361 15.843 12.278 32.326 Atomic orbital electron populations 1.22902 0.79429 1.03593 1.01071 1.87936 1.21590 1.28885 1.95675 1.22806 0.91072 0.85157 1.02926 1.23317 0.94487 0.99797 0.85005 1.86189 1.18721 1.77737 1.41470 1.19024 0.84434 0.99372 0.94032 1.21301 0.92223 1.03859 0.99424 1.21141 0.95865 0.99654 0.94865 1.17282 0.82241 1.01216 0.94032 1.42306 1.05612 1.24247 1.59587 1.16159 0.82984 0.81670 0.79524 1.90901 1.56309 1.49932 1.52981 1.45182 1.04595 1.29023 1.58920 1.21137 0.95241 0.85486 0.94662 1.19144 0.89003 0.96620 0.96687 1.21493 0.92410 1.09465 1.35110 0.92421 1.25818 0.97174 0.99686 0.96289 1.70052 1.02842 1.38163 1.45382 0.85426 0.78325 0.79118 0.78350 1.19165 1.20261 1.20212 1.21037 0.90689 1.02961 1.01316 1.17039 0.87038 1.05468 0.87042 1.91438 1.69943 1.89569 1.61961 0.89414 0.92044 0.93555 0.87656 0.92232 0.90001 0.86872 0.79982 0.80461 0.73140 0.75242 0.93618 0.93650 0.97012 0.96963 0.92556 0.85302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 113.37 1.25 1.53 16 2 O -0.42 -7.49 10.67 -144.34 -1.54 -9.03 16 3 C 0.06 0.61 6.32 71.98 0.45 1.07 16 4 C 0.05 0.55 5.12 71.98 0.37 0.92 16 5 O -0.33 -7.33 9.97 -89.22 -0.89 -8.22 16 6 C 0.08 1.80 6.69 22.52 0.15 1.95 16 7 C -0.15 -2.20 9.03 22.34 0.20 -1.99 16 8 C -0.09 -1.44 9.96 22.39 0.22 -1.22 16 9 C 0.15 3.54 6.30 38.09 0.24 3.78 16 10 N -0.67 -15.47 5.35 -317.07 -1.70 -17.16 16 11 C 0.70 23.33 8.41 179.05 1.51 24.84 16 12 O -0.62 -26.56 13.78 -4.00 -0.06 -26.61 16 13 N -0.72 -24.04 5.56 -478.53 -2.66 -26.70 16 14 C 0.16 6.75 5.61 86.38 0.48 7.23 16 15 C 0.02 1.14 5.09 29.85 0.15 1.29 16 16 C -0.55 -30.32 9.11 25.60 0.23 -30.08 16 17 H 0.06 3.16 7.74 -2.91 -0.02 3.14 16 18 C 0.01 0.51 5.46 84.65 0.46 0.97 16 19 N -0.92 -53.49 13.29 21.45 0.28 -53.21 16 20 Si 0.96 43.56 29.54 68.60 2.03 45.59 16 21 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 22 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 23 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 24 C -0.14 -4.26 8.67 22.42 0.19 -4.06 16 25 C 0.05 1.63 7.31 22.44 0.16 1.79 16 26 F -0.15 -5.15 17.11 44.97 0.77 -4.38 16 27 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 29 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.08 0.80 7.65 -2.39 -0.02 0.78 16 33 H 0.11 0.51 7.67 -2.39 -0.02 0.49 16 34 H 0.18 1.09 6.29 -2.91 -0.02 1.07 16 35 H 0.18 1.25 8.06 -2.91 -0.02 1.23 16 36 H 0.43 6.15 8.84 -92.71 -0.82 5.33 16 37 H 0.41 11.03 8.49 -92.71 -0.79 10.24 16 38 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 39 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 41 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 42 H 0.27 14.41 8.31 -92.71 -0.77 13.64 16 43 H 0.13 4.76 6.22 -2.91 -0.02 4.74 16 Total: -1.00 -78.98 373.21 1.77 -77.21 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: -0.55 Total: 14.51 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: 6.08 Total: 8.01 kcal Atomic # 7 Polarization: -93.00 SS G_CDS: -4.07 Total: -97.07 kcal Atomic # 8 Polarization: -41.38 SS G_CDS: -2.48 Total: -43.86 kcal Atomic # 9 Polarization: -5.15 SS G_CDS: 0.77 Total: -4.38 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Total: -78.98 1.77 -77.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273184479.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.789 kcal (2) G-P(sol) polarization free energy of solvation -78.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds