Wall clock time and date at job start Tue Mar 31 2020 14:45:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46493 * 109.47310 * 68.58696 * 3 2 1 5 5 C 1.36977 * 119.99848 * 270.57760 * 4 3 2 6 6 H 1.07992 * 119.99592 * 197.90402 * 5 4 3 7 7 C 1.38965 * 119.99554 * 17.90823 * 5 4 3 8 8 N 1.31420 * 120.00468 * 21.32308 * 7 5 4 9 9 Si 1.86801 * 119.99482 * 201.32059 * 7 5 4 10 10 H 1.48505 * 109.47052 * 90.00384 * 9 7 5 11 11 H 1.48502 * 109.47047 * 209.99849 * 9 7 5 12 12 H 1.48495 * 109.47267 * 330.00061 * 9 7 5 13 13 C 1.34773 * 120.00443 * 90.57787 * 4 3 2 14 14 O 1.21699 * 120.00343 * 185.13943 * 13 4 3 15 15 C 1.46825 * 119.99444 * 5.14154 * 13 4 3 16 16 C 1.36457 * 126.77767 * 310.48272 * 15 13 4 17 17 N 1.35486 * 109.75171 * 180.02562 * 16 15 13 18 18 C 1.46504 * 124.78178 * 179.97438 * 17 16 15 19 19 C 1.53001 * 109.47211 * 265.02312 * 18 17 16 20 20 O 1.42899 * 109.46909 * 180.02562 * 19 18 17 21 21 C 1.42907 * 113.99832 * 179.97438 * 20 19 18 22 22 C 1.37973 * 110.43277 * 0.26362 * 17 16 15 23 23 C 1.39125 * 133.17282 * 180.45543 * 22 17 16 24 24 C 1.37767 * 119.93022 * 179.55464 * 23 22 17 25 25 C 1.38750 * 120.63588 * 359.75911 * 24 23 22 26 26 C 1.37759 * 120.29880 * 359.97438 * 25 24 23 27 27 C 1.39274 * 119.67072 * 0.02562 * 26 25 24 28 28 H 4.40635 * 5.51331 * 180.02562 * 4 1 2 29 29 H 1.09003 * 109.47086 * 308.58111 * 3 2 1 30 30 H 1.09005 * 109.47130 * 188.58851 * 3 2 1 31 31 H 0.96997 * 119.99867 * 180.02562 * 8 7 5 32 32 H 1.08008 * 125.12294 * 0.03308 * 16 15 13 33 33 H 1.09009 * 109.46832 * 145.02262 * 18 17 16 34 34 H 1.08996 * 109.47560 * 25.02588 * 18 17 16 35 35 H 1.08995 * 109.47198 * 60.00021 * 19 18 17 36 36 H 1.09003 * 109.46638 * 300.00063 * 19 18 17 37 37 H 1.08997 * 109.47038 * 179.97438 * 21 20 19 38 38 H 1.08996 * 109.47025 * 300.00153 * 21 20 19 39 39 H 1.09004 * 109.46979 * 60.00004 * 21 20 19 40 40 H 1.08003 * 120.02840 * 359.29373 * 23 22 17 41 41 H 1.07998 * 119.68395 * 179.73907 * 24 23 22 42 42 H 1.07994 * 119.85227 * 179.97438 * 25 24 23 43 43 H 1.08005 * 120.16600 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1346 -0.5034 -1.2858 5 6 3.3522 -1.8448 -1.4575 6 1 3.9702 -2.1915 -2.2725 7 6 2.7778 -2.7594 -0.5831 8 7 1.7247 -2.4189 0.1256 9 14 3.5024 -4.4729 -0.4151 10 1 4.5318 -4.4722 0.6553 11 1 2.4254 -5.4337 -0.0654 12 1 4.1260 -4.8749 -1.7014 13 6 3.3700 0.3527 -2.2998 14 8 3.6857 -0.0734 -3.3951 15 6 3.2456 1.7995 -2.0828 16 6 2.1969 2.4513 -1.5020 17 7 2.4424 3.7835 -1.4780 18 6 1.5327 4.7912 -0.9272 19 6 0.6720 5.3704 -2.0517 20 8 -0.2149 6.3537 -1.5145 21 6 -1.0677 6.9608 -2.4873 22 6 3.6669 4.0580 -2.0513 23 6 4.3761 5.2360 -2.2635 24 6 5.6126 5.1944 -2.8695 25 6 6.1642 3.9853 -3.2683 26 6 5.4799 2.8075 -3.0620 27 6 4.2289 2.8350 -2.4505 28 1 -1.0498 0.0001 -0.0002 29 1 3.0097 -0.6401 0.8034 30 1 3.0089 1.0170 0.1535 31 1 1.3240 -3.0572 0.7362 32 1 1.3055 1.9767 -1.1189 33 1 2.1125 5.5902 -0.4650 34 1 0.8893 4.3294 -0.1783 35 1 0.0922 4.5715 -2.5139 36 1 1.3155 5.8324 -2.8005 37 1 -1.7099 7.6945 -2.0002 38 1 -0.4601 7.4554 -3.2451 39 1 -1.6839 6.1950 -2.9586 40 1 3.9557 6.1826 -1.9572 41 1 6.1577 6.1117 -3.0360 42 1 7.1342 3.9674 -3.7426 43 1 5.9111 1.8676 -3.3736 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282092938.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:18 Heat of formation + Delta-G solvation = 63.034576 kcal Electronic energy + Delta-G solvation = -27442.222128 eV Core-core repulsion = 23649.006698 eV Total energy + Delta-G solvation = -3793.215430 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.26405 -38.38362 -38.13835 -36.81701 -35.06690 -33.23081 -31.98007 -31.24080 -30.58811 -28.87805 -28.44455 -26.56130 -26.26917 -24.81947 -23.45055 -22.44398 -21.74050 -20.54848 -18.81528 -17.87168 -17.27263 -16.73430 -16.43399 -16.26803 -15.98473 -15.81115 -15.25065 -15.14410 -14.43021 -14.29402 -14.05598 -13.84839 -13.72405 -13.59067 -13.25761 -12.76839 -12.54081 -12.40098 -12.08337 -11.92515 -11.71178 -11.66761 -11.60399 -11.29021 -11.06686 -10.97841 -10.66805 -10.45902 -10.33850 -10.02404 -9.39943 -9.24744 -9.24446 -8.88398 -8.44706 -7.99148 -7.85089 -7.30879 -6.27069 -3.83625 1.34143 1.80715 2.61019 2.69511 3.19402 3.26954 3.31996 3.66994 3.80838 3.96037 4.07359 4.19430 4.27786 4.52116 4.71918 4.85776 4.93947 5.02300 5.04944 5.07337 5.11587 5.18677 5.28170 5.30179 5.33526 5.35326 5.49207 5.55382 5.72149 5.77489 5.92089 6.08300 6.12613 6.29521 6.39603 6.66952 6.72298 6.74527 6.83767 6.99550 7.01892 7.05929 7.40931 7.45147 7.57764 8.10450 8.46656 8.86063 9.16326 9.38062 9.97278 10.68196 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.012665 B = 0.004129 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2210.353617 B = 6778.873271 C = 8538.841392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.267 4.267 2 C -0.099 4.099 3 C 0.231 3.769 4 N -0.433 5.433 5 C -0.312 4.312 6 H 0.105 0.895 7 C 0.031 3.969 8 N -0.858 5.858 9 Si 0.922 3.078 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.269 1.269 13 C 0.518 3.482 14 O -0.579 6.579 15 C -0.180 4.180 16 C 0.075 3.925 17 N -0.475 5.475 18 C 0.114 3.886 19 C 0.044 3.956 20 O -0.390 6.390 21 C 0.033 3.967 22 C 0.090 3.910 23 C -0.133 4.133 24 C -0.105 4.105 25 C -0.151 4.151 26 C -0.058 4.058 27 C -0.068 4.068 28 H 0.197 0.803 29 H 0.098 0.902 30 H 0.068 0.932 31 H 0.268 0.732 32 H 0.178 0.822 33 H 0.095 0.905 34 H 0.101 0.899 35 H 0.059 0.941 36 H 0.057 0.943 37 H 0.088 0.912 38 H 0.042 0.958 39 H 0.044 0.956 40 H 0.115 0.885 41 H 0.120 0.880 42 H 0.120 0.880 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.203 17.572 0.542 17.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.286 4.286 2 C -0.101 4.101 3 C 0.107 3.893 4 N -0.150 5.150 5 C -0.439 4.439 6 H 0.123 0.877 7 C -0.173 4.173 8 N -0.495 5.495 9 Si 0.749 3.251 10 H -0.203 1.203 11 H -0.211 1.211 12 H -0.194 1.194 13 C 0.307 3.693 14 O -0.463 6.463 15 C -0.190 4.190 16 C -0.052 4.052 17 N -0.160 5.160 18 C -0.008 4.008 19 C -0.034 4.034 20 O -0.308 6.308 21 C -0.063 4.063 22 C -0.014 4.014 23 C -0.153 4.153 24 C -0.124 4.124 25 C -0.171 4.171 26 C -0.076 4.076 27 C -0.073 4.073 28 H 0.214 0.786 29 H 0.116 0.884 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.195 0.805 33 H 0.113 0.887 34 H 0.120 0.880 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.107 0.893 38 H 0.061 0.939 39 H 0.062 0.938 40 H 0.133 0.867 41 H 0.138 0.862 42 H 0.138 0.862 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -1.376 17.473 0.481 17.534 hybrid contribution -0.355 -1.026 -0.053 1.087 sum -1.731 16.447 0.428 16.543 Atomic orbital electron populations 1.24166 0.95231 1.07270 1.01972 1.22972 0.94152 0.94488 0.98530 1.18247 0.84465 0.97822 0.88735 1.43589 1.56076 1.06673 1.08702 1.19674 1.29078 0.79987 1.15146 0.87735 1.25315 0.94636 0.99877 0.97467 1.70048 1.17065 1.36107 1.26315 0.85990 0.78592 0.81607 0.78945 1.20340 1.21147 1.19365 1.17010 0.84310 0.83636 0.84342 1.90633 1.53476 1.78370 1.23816 1.20451 0.95972 0.94160 1.08422 1.22424 1.00622 0.81460 1.00678 1.43445 1.15014 1.05823 1.51677 1.21460 0.92235 0.91668 0.95482 1.22901 0.92495 0.91652 0.96368 1.87790 1.52371 1.55646 1.34969 1.22768 0.93520 0.97451 0.92587 1.18236 0.86990 0.95426 1.00746 1.19908 0.95792 0.94713 1.04908 1.20698 0.94718 0.97794 0.99196 1.20856 1.00445 0.92105 1.03663 1.20630 0.92568 0.98592 0.95820 1.18905 0.95219 0.91100 1.02098 0.78596 0.88399 0.91432 0.92121 0.80474 0.88699 0.88046 0.92312 0.92519 0.89343 0.93919 0.93782 0.86740 0.86157 0.86181 0.85523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -5.38 18.81 29.55 0.56 -4.83 16 2 C -0.10 -2.17 8.72 -37.12 -0.32 -2.49 16 3 C 0.23 5.14 4.77 -6.83 -0.03 5.11 16 4 N -0.43 -11.11 2.58 -119.36 -0.31 -11.42 16 5 C -0.31 -8.60 9.29 -14.98 -0.14 -8.74 16 6 H 0.10 3.04 7.43 -52.49 -0.39 2.65 16 7 C 0.03 0.82 4.89 -17.46 -0.09 0.73 16 8 N -0.86 -22.25 9.01 55.50 0.50 -21.75 16 9 Si 0.92 20.47 29.60 -169.99 -5.03 15.43 16 10 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 11 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 12 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 13 C 0.52 13.25 7.51 -12.79 -0.10 13.15 16 14 O -0.58 -16.79 16.79 5.19 0.09 -16.71 16 15 C -0.18 -3.80 5.16 -103.31 -0.53 -4.33 16 16 C 0.07 1.33 9.11 -16.58 -0.15 1.18 16 17 N -0.47 -7.06 2.74 -114.18 -0.31 -7.37 16 18 C 0.11 1.27 6.32 -4.04 -0.03 1.25 16 19 C 0.04 0.47 6.26 37.16 0.23 0.70 16 20 O -0.39 -4.12 10.70 -35.23 -0.38 -4.50 16 21 C 0.03 0.26 11.01 101.05 1.11 1.37 16 22 C 0.09 1.44 6.79 -83.96 -0.57 0.87 16 23 C -0.13 -1.75 9.97 -39.42 -0.39 -2.14 16 24 C -0.10 -1.31 10.01 -39.56 -0.40 -1.71 16 25 C -0.15 -2.11 10.03 -39.57 -0.40 -2.51 16 26 C -0.06 -1.01 10.09 -39.37 -0.40 -1.40 16 27 C -0.07 -1.30 6.36 -104.95 -0.67 -1.96 16 28 H 0.20 3.25 7.80 -54.10 -0.42 2.83 16 29 H 0.10 2.27 6.91 -51.93 -0.36 1.91 16 30 H 0.07 1.33 5.88 -51.93 -0.31 1.03 16 31 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 32 H 0.18 3.11 5.38 -52.48 -0.28 2.82 16 33 H 0.09 0.93 8.14 -51.92 -0.42 0.50 16 34 H 0.10 1.05 8.11 -51.93 -0.42 0.63 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 39 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.11 1.21 8.06 -52.48 -0.42 0.79 16 41 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 42 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 43 H 0.13 2.31 8.06 -52.48 -0.42 1.89 16 LS Contribution 368.76 15.07 5.56 5.56 Total: -1.00 -32.61 368.76 -7.73 -40.35 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -5.54 Total: 6.18 kcal Atomic # 6 Polarization: -3.45 SS G_CDS: -2.31 Total: -5.76 kcal Atomic # 7 Polarization: -40.42 SS G_CDS: -0.12 Total: -40.54 kcal Atomic # 8 Polarization: -20.92 SS G_CDS: -0.29 Total: -21.21 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.03 Total: 15.43 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.61 -7.73 -40.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282092938.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.380 kcal (2) G-P(sol) polarization free energy of solvation -32.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.345 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds